Strain Fitness in Shewanella amazonensis SB2B around Sama_3180

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
3,769,290	-		Sama_3179	0.49	-0.7
3,769,290	-		Sama_3179	0.49	+0.5
3,769,290	-		Sama_3179	0.49	-0.7
3,769,290	-		Sama_3179	0.49	-0.1
3,769,315	-		Sama_3179	0.50	+0.2
3,769,315	-		Sama_3179	0.50	-0.3
3,769,315	-		Sama_3179	0.50	-0.2
3,769,316	+		Sama_3179	0.50	+0.3
3,769,316	+		Sama_3179	0.50	-0.0
3,769,316	+		Sama_3179	0.50	-1.4
3,769,316	+		Sama_3179	0.50	+0.8
3,769,316	+		Sama_3179	0.50	-0.3
3,769,316	+		Sama_3179	0.50	-0.1
3,769,316	+		Sama_3179	0.50	-0.1
3,769,316	+		Sama_3179	0.50	-0.6
3,769,317	-		Sama_3179	0.50	+1.1
3,769,317	-		Sama_3179	0.50	-0.3
3,769,317	-		Sama_3179	0.50	-0.8
3,769,354	+		Sama_3179	0.52	-0.7
3,769,354	+		Sama_3179	0.52	-1.1
3,769,354	+		Sama_3179	0.52	-0.6
3,769,355	-		Sama_3179	0.52	-0.1
3,769,365	+		Sama_3179	0.53	-0.5
3,769,366	-		Sama_3179	0.53	+0.3
3,769,366	-		Sama_3179	0.53	+0.6
3,769,366	-		Sama_3179	0.53	+1.0
3,769,395	-		Sama_3179	0.54	-0.1
3,769,420	+		Sama_3179	0.56	-0.5
3,769,473	-		Sama_3179	0.59	-0.0
3,769,473	-		Sama_3179	0.59	-0.1
3,769,581	+		Sama_3179	0.65	-0.5
3,769,581	+		Sama_3179	0.65	+0.6
3,769,582	-		Sama_3179	0.65	+1.0
3,769,628	-		Sama_3179	0.67	+0.5
3,769,675	-		Sama_3179	0.70	-0.2
3,769,675	-		Sama_3179	0.70	+1.8
3,769,681	-		Sama_3179	0.70	+0.0
3,769,875	+		Sama_3179	0.81	-0.6
3,769,875	+		Sama_3179	0.81	+0.1
3,769,875	+		Sama_3179	0.81	-0.9
3,769,875	+		Sama_3179	0.81	+1.0
3,769,875	+		Sama_3179	0.81	-0.7
3,769,875	+		Sama_3179	0.81	+0.2
3,769,875	+		Sama_3179	0.81	+0.6
3,769,875	+		Sama_3179	0.81	+1.0
3,769,876	-		Sama_3179	0.81	+0.1
3,769,876	-		Sama_3179	0.81	-0.3
3,769,876	-		Sama_3179	0.81	+0.4
3,769,876	-		Sama_3179	0.81	+0.6
3,769,876	-		Sama_3179	0.81	+0.1
3,769,876	-		Sama_3179	0.81	+0.4
3,769,923	+		Sama_3179	0.84	-0.9
3,769,923	+		Sama_3179	0.84	+0.5
3,769,924	-		Sama_3179	0.84	+0.9
3,769,925	+		Sama_3179	0.84	-0.6
3,769,925	+		Sama_3179	0.84	+0.9
3,769,925	+		Sama_3179	0.84	+1.3
3,769,926	-		Sama_3179	0.84	-1.1
3,769,926	-		Sama_3179	0.84	-0.3
3,769,926	-		Sama_3179	0.84	+0.2
3,769,926	-		Sama_3179	0.84	+0.4
3,769,926	-		Sama_3179	0.84	+0.1
3,769,926	-		Sama_3179	0.84	-0.7
3,769,926	-		Sama_3179	0.84	+0.3
3,769,926	-		Sama_3179	0.84	+0.2
3,769,929	+		Sama_3179	0.84	-0.2
3,769,929	+		Sama_3179	0.84	+0.1
3,769,930	-		Sama_3179	0.84	-1.0
3,769,930	-		Sama_3179	0.84	-0.7
3,769,930	-		Sama_3179	0.84	+0.0
3,769,930	-		Sama_3179	0.84	-0.6
3,769,941	+		Sama_3179	0.85	-0.0
3,769,941	+		Sama_3179	0.85	-0.3
3,769,942	-		Sama_3179	0.85	-0.4
3,769,942	-		Sama_3179	0.85	-0.8
3,770,019	+		Sama_3179	0.89	+0.1
3,770,019	+		Sama_3179	0.89	+1.6
3,770,019	+		Sama_3179	0.89	-0.3
3,770,020	-		Sama_3179	0.89	-0.3
3,770,020	-		Sama_3179	0.89	+0.0
3,770,020	-		Sama_3179	0.89	+0.9
3,770,022	+		Sama_3179	0.89	-1.0
3,770,022	+		Sama_3179	0.89	+0.1
3,770,022	+		Sama_3179	0.89	-0.1
3,770,022	+		Sama_3179	0.89	+0.5
3,770,022	+		Sama_3179	0.89	-0.7
3,770,022	+		Sama_3179	0.89	-1.0
3,770,023	-		Sama_3179	0.89	-0.3
3,770,023	-		Sama_3179	0.89	+0.1
3,770,023	-		Sama_3179	0.89	-0.3
3,770,051	+				+0.8
3,770,070	+				-1.3
3,770,070	+				-0.4
3,770,071	-				-1.4
3,770,073	+				-1.0
3,770,073	+				+0.5
3,770,073	+				-0.2
3,770,073	+				-0.2
3,770,073	+				+0.1
3,770,074	-				+1.5
3,770,074	-				+0.6
3,770,074	-				+0.5
3,770,074	-				-0.6
3,770,079	+				+0.2
3,770,079	+				-0.1
3,770,079	+				+0.2
3,770,080	-				+0.8
3,770,080	-				+0.5
3,770,080	-				-0.7
3,770,080	-				+0.3
3,770,080	-				-0.1
3,770,080	-				+0.7
3,770,080	-				-1.0
3,770,085	+				+1.1
3,770,085	+				+1.5
3,770,085	+				-0.2
3,770,085	+				-0.3
3,770,085	+				-0.3
3,770,086	-				+0.2
3,770,086	-				-1.3
3,770,086	-				+1.3
3,770,086	-				+0.3
3,770,086	-				-2.3
3,770,134	+				-0.3
3,770,134	+				+0.4
3,770,134	+				+0.9
3,770,135	-				-0.1
3,770,135	-				-0.4
3,770,135	-				-0.3
3,770,135	-				-0.1
3,770,135	-				-0.3
3,770,135	-				-0.3
3,770,214	+				+0.3
3,770,214	+				+0.4
3,770,526	+		Sama_3180	0.19	-0.4
3,770,526	+		Sama_3180	0.19	-1.3
3,770,527	-		Sama_3180	0.19	+0.1
3,770,527	-		Sama_3180	0.19	+0.4
3,770,527	-		Sama_3180	0.19	+0.6
3,770,527	-		Sama_3180	0.19	+0.5
3,770,527	-		Sama_3180	0.19	-0.3
3,770,527	-		Sama_3180	0.19	-0.5
3,770,575	+		Sama_3180	0.22	-2.9
3,770,576	-		Sama_3180	0.23	+0.5
3,770,592	+		Sama_3180	0.24	-0.0
3,770,592	+		Sama_3180	0.24	-0.2
3,770,592	+		Sama_3180	0.24	-0.1
3,770,593	-		Sama_3180	0.24	+0.0
3,770,656	+		Sama_3180	0.28	+0.4
3,770,656	+		Sama_3180	0.28	-0.5
3,770,656	+		Sama_3180	0.28	-1.0
3,770,656	+		Sama_3180	0.28	-1.8
3,770,656	+		Sama_3180	0.28	-1.4
3,770,656	+		Sama_3180	0.28	+0.2
3,770,656	+		Sama_3180	0.28	+0.6
3,770,656	+		Sama_3180	0.28	-0.1
3,770,656	+		Sama_3180	0.28	-0.0
3,770,657	-		Sama_3180	0.28	-1.1
3,770,657	-		Sama_3180	0.28	-0.4
3,770,657	-		Sama_3180	0.28	+0.3
3,770,657	-		Sama_3180	0.28	-0.4
3,770,657	-		Sama_3180	0.28	+0.1
3,770,657	-		Sama_3180	0.28	-0.5
3,770,657	-		Sama_3180	0.28	-0.4
3,770,657	-		Sama_3180	0.28	-0.6
3,770,657	-		Sama_3180	0.28	+0.1
3,770,657	-		Sama_3180	0.28	-0.3
3,770,657	-		Sama_3180	0.28	+0.3
3,770,657	-		Sama_3180	0.28	-0.3
3,770,657	-		Sama_3180	0.28	+0.1
3,770,657	-		Sama_3180	0.28	-0.8
3,770,657	-		Sama_3180	0.28	-0.0
3,770,657	-		Sama_3180	0.28	-1.3
3,770,657	-		Sama_3180	0.28	-0.1
3,770,657	-		Sama_3180	0.28	-1.0
3,770,657	-		Sama_3180	0.28	+0.6
3,770,658	+		Sama_3180	0.28	+0.5
3,770,658	+		Sama_3180	0.28	-0.1
3,770,658	+		Sama_3180	0.28	+1.6
3,770,658	+		Sama_3180	0.28	-0.5
3,770,658	+		Sama_3180	0.28	+0.0
3,770,658	+		Sama_3180	0.28	+0.0
3,770,659	-		Sama_3180	0.28	-2.4
3,770,659	-		Sama_3180	0.28	+0.3
3,770,659	-		Sama_3180	0.28	+0.3
3,770,661	+		Sama_3180	0.29	-0.3
3,770,661	+		Sama_3180	0.29	+0.3
3,770,661	+		Sama_3180	0.29	+0.5
3,770,662	-		Sama_3180	0.29	+0.3
3,770,662	-		Sama_3180	0.29	+0.2
3,770,662	-		Sama_3180	0.29	+0.6
3,770,662	-		Sama_3180	0.29	-0.8
3,770,715	-		Sama_3180	0.32	-0.8
3,770,715	-		Sama_3180	0.32	-0.8
3,770,767	+		Sama_3180	0.36	-0.5
3,770,768	-		Sama_3180	0.36	+0.2
3,770,768	-		Sama_3180	0.36	+0.5
3,770,768	-		Sama_3180	0.36	+0.9
3,770,821	+		Sama_3180	0.40	-0.1
3,770,889	+		Sama_3180	0.45	-0.6
3,770,890	-		Sama_3180	0.45	-0.1
3,770,890	-		Sama_3180	0.45	-0.3
3,770,917	-		Sama_3180	0.47	-0.6
3,770,930	+		Sama_3180	0.48	-0.3
3,770,930	+		Sama_3180	0.48	-0.6
3,770,930	+		Sama_3180	0.48	+1.1
3,770,930	+		Sama_3180	0.48	+0.0
3,770,931	-		Sama_3180	0.48	-0.6
3,770,931	-		Sama_3180	0.48	-0.3
3,770,931	-		Sama_3180	0.48	-0.0
3,770,943	+		Sama_3180	0.48	-0.8
3,770,952	+		Sama_3180	0.49	-1.1
3,770,953	-		Sama_3180	0.49	+0.0
3,770,953	-		Sama_3180	0.49	-0.1
3,770,953	-		Sama_3180	0.49	-0.0
3,770,953	-		Sama_3180	0.49	-0.1
3,771,186	+		Sama_3180	0.66	+0.5
3,771,186	+		Sama_3180	0.66	+0.6
3,771,187	-		Sama_3180	0.66	+0.3
3,771,196	+		Sama_3180	0.66	-0.7
3,771,205	+		Sama_3180	0.67	+0.0
3,771,205	+		Sama_3180	0.67	+0.4
3,771,226	+		Sama_3180	0.68	+0.2
3,771,226	+		Sama_3180	0.68	-2.3
3,771,226	+		Sama_3180	0.68	-1.7
3,771,226	+		Sama_3180	0.68	-1.2
3,771,226	+		Sama_3180	0.68	-0.3
3,771,226	+		Sama_3180	0.68	-0.1
3,771,226	+		Sama_3180	0.68	+1.0
3,771,226	+		Sama_3180	0.68	+0.5
3,771,226	+		Sama_3180	0.68	-0.2
3,771,226	+		Sama_3180	0.68	-1.1
3,771,226	+		Sama_3180	0.68	-0.1
3,771,226	+		Sama_3180	0.68	-0.9
3,771,226	+		Sama_3180	0.68	+0.1
3,771,226	+		Sama_3180	0.68	-0.3
3,771,227	-		Sama_3180	0.69	+0.7
3,771,227	-		Sama_3180	0.69	-0.8
3,771,227	-		Sama_3180	0.69	+0.2
3,771,227	-		Sama_3180	0.69	+0.6
3,771,227	-		Sama_3180	0.69	-1.1
3,771,227	-		Sama_3180	0.69	-1.0
3,771,227	-		Sama_3180	0.69	-0.8
3,771,274	+		Sama_3180	0.72	+0.0
3,771,288	+		Sama_3180	0.73	-0.3
3,771,313	+		Sama_3180	0.75	+0.2
3,771,314	-		Sama_3180	0.75	-0.3
3,771,336	+		Sama_3180	0.76	-0.1
3,771,336	+		Sama_3180	0.76	-0.2
3,771,336	+		Sama_3180	0.76	+0.2
3,771,337	-		Sama_3180	0.76	-0.1
3,771,363	+		Sama_3180	0.78	+0.2
3,771,364	-		Sama_3180	0.78	-0.7
3,771,364	-		Sama_3180	0.78	+0.6
3,771,385	+		Sama_3180	0.80	+0.4
3,771,401	-		Sama_3180	0.81	-0.1
3,771,401	-		Sama_3180	0.81	-0.2
3,771,567	+				+0.8
3,771,567	+				+0.2
3,771,568	-				-0.7
3,771,720	-				+0.3
3,771,720	-				+0.0
3,771,720	-				+1.0
3,771,720	-				+0.1
3,771,720	-				-0.5
3,771,720	-				+0.6
3,771,720	-				+0.4
3,771,879	+				-0.3
3,771,885	+				+0.6
3,771,885	+				-0.2
3,771,885	+				-0.2
3,771,916	-				+0.5
3,771,916	-				-1.5
3,771,944	+				+0.6
3,771,948	+				-0.8
3,771,948	+				-1.6
3,771,948	+				-2.6
3,771,948	+				+0.6
3,771,948	+				-0.4
3,771,948	+				-1.1
3,771,949	-				+1.0
3,771,949	-				-0.1
3,771,949	-				-0.7
3,771,949	-				+0.5
3,771,949	-				+2.0
3,771,949	-				+0.3
3,771,949	-				-0.1
3,771,949	-				+0.3
3,771,949	-				+0.3
3,771,949	-				+0.1
3,771,950	+				-1.0
3,771,950	+				-0.5
3,771,951	-				+0.4
3,771,951	-				+0.4
3,771,951	-				+0.1
3,771,958	+				+0.6
3,771,958	+				+0.3
3,771,960	+				-0.3
3,771,960	+				-0.3
3,771,960	+				+0.0
3,771,960	+				-0.5
3,771,960	+				-1.0
3,771,960	+				+0.3
3,771,961	-				-0.8
3,771,961	-				+0.0
3,771,961	-				-0.8
3,771,972	+				-0.9
3,771,972	+				+0.8
3,771,973	-				-0.0
3,771,983	+				+0.2
3,771,983	+				-0.4
3,771,983	+				+0.4
3,771,983	+				+0.3
3,771,983	+				-1.2
3,771,983	+				-0.7
3,771,983	+				-0.5
3,771,984	-				+0.3
3,771,984	-				-0.1
3,771,984	-				-0.3
3,771,984	-				-0.7
3,771,984	-				-0.9
3,771,984	-				+1.5
3,771,984	-				+0.4
3,771,985	+				+0.9
3,771,986	-				-0.0
3,771,986	-				-0.2
3,771,992	+				+0.7
3,771,993	-				-1.7
3,771,993	-				-0.0
3,771,995	+				-0.1
3,771,995	+				+0.8
3,771,995	+				-0.8
3,771,996	-				-0.9
3,771,996	-				+0.0
3,771,996	-				+0.3
3,772,077	+				-0.9
3,772,181	-		Sama_3181	0.15	+1.2
3,772,181	-		Sama_3181	0.15	+0.0
3,772,214	+		Sama_3181	0.17	+0.9
3,772,214	+		Sama_3181	0.17	-0.1
3,772,214	+		Sama_3181	0.17	+1.1
3,772,215	-		Sama_3181	0.18	+1.5
3,772,215	-		Sama_3181	0.18	+1.0
3,772,217	+		Sama_3181	0.18	+0.2
3,772,232	+		Sama_3181	0.19	-0.9
3,772,233	-		Sama_3181	0.19	-0.2
3,772,233	-		Sama_3181	0.19	-0.3
3,772,287	+		Sama_3181	0.24	+0.3
3,772,287	+		Sama_3181	0.24	+0.6
3,772,288	-		Sama_3181	0.24	-1.3
3,772,289	+		Sama_3181	0.24	+0.1
3,772,289	+		Sama_3181	0.24	-0.9
3,772,289	+		Sama_3181	0.24	+0.2
3,772,289	+		Sama_3181	0.24	+0.7
3,772,289	+		Sama_3181	0.24	-0.4
3,772,289	+		Sama_3181	0.24	-1.4
3,772,290	-		Sama_3181	0.24	-0.0
3,772,290	-		Sama_3181	0.24	+0.3
3,772,290	-		Sama_3181	0.24	-0.7
3,772,290	-		Sama_3181	0.24	+1.5
3,772,290	-		Sama_3181	0.24	-0.3
3,772,290	-		Sama_3181	0.24	-0.2
3,772,290	-		Sama_3181	0.24	+0.2
3,772,363	-		Sama_3181	0.31	+0.0
3,772,404	+		Sama_3181	0.34	+0.1
3,772,404	+		Sama_3181	0.34	-0.6
3,772,404	+		Sama_3181	0.34	-0.8
3,772,404	+		Sama_3181	0.34	-1.1
3,772,404	+		Sama_3181	0.34	+1.7
3,772,404	+		Sama_3181	0.34	+0.7
3,772,405	-		Sama_3181	0.34	+0.8
3,772,405	-		Sama_3181	0.34	+0.1
3,772,405	-		Sama_3181	0.34	+1.1
3,772,405	-		Sama_3181	0.34	-0.4
3,772,405	-		Sama_3181	0.34	+0.0
3,772,405	-		Sama_3181	0.34	-0.5
3,772,483	+		Sama_3181	0.41	-1.0
3,772,483	+		Sama_3181	0.41	+1.9
3,772,515	+		Sama_3181	0.44	-0.6
3,772,529	-		Sama_3181	0.46	-0.6
3,772,561	-		Sama_3181	0.48	-0.3
3,772,631	+		Sama_3181	0.55	-0.4
3,772,632	-		Sama_3181	0.55	+0.4
3,772,632	-		Sama_3181	0.55	-0.3