Strain Fitness in Shewanella amazonensis SB2B around Sama_1987

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
2,413,328	+				+0.6
2,413,334	+				-0.3
2,413,334	+				+0.6
2,413,334	+				-0.6
2,413,334	+				+2.1
2,413,334	+				-1.2
2,413,334	+				+0.2
2,413,334	+				+1.7
2,413,334	+				+0.4
2,413,335	-				-0.2
2,413,335	-				+0.9
2,413,335	-				+1.0
2,413,335	-				-0.5
2,413,335	-				+0.5
2,413,335	-				-0.8
2,413,335	-				+0.7
2,413,342	+				+0.4
2,413,342	+				+0.8
2,413,342	+				+0.9
2,413,342	+				-0.0
2,413,342	+				-0.8
2,413,343	-				-0.7
2,413,343	-				+0.7
2,413,343	-				-0.1
2,413,343	-				-1.6
2,413,343	-				+1.4
2,413,343	-				+0.4
2,413,343	-				-1.2
2,413,370	+				+0.4
2,413,396	+				+1.5
2,413,408	+				-1.0
2,413,412	+				+1.4
2,413,412	+				+0.3
2,413,412	+				-1.2
2,413,412	+				-0.4
2,413,412	+				+0.3
2,413,412	+				-0.1
2,413,413	-				+0.1
2,413,413	-				+0.4
2,413,413	-				+1.2
2,413,413	-				-0.2
2,413,413	-				+0.2
2,413,413	-				-0.2
2,413,413	-				+0.0
2,413,413	-				+0.8
2,413,413	-				+0.4
2,413,425	+				-0.6
2,413,429	+				-0.8
2,413,429	+				+0.6
2,413,429	+				+0.0
2,413,429	+				+0.2
2,413,429	+				+1.1
2,413,429	+				+0.5
2,413,430	-				-0.1
2,413,430	-				+0.3
2,413,430	-				-0.0
2,413,430	-				-0.6
2,413,430	-				-0.1
2,413,430	-				-0.3
2,413,440	+				+0.5
2,413,493	+				+0.0
2,413,494	-				+0.0
2,413,507	-				+0.2
2,413,752	+		Sama_1986	0.45	-0.8
2,413,752	+		Sama_1986	0.45	+0.6
2,413,753	-		Sama_1986	0.45	-0.5
2,413,792	+		Sama_1986	0.52	+0.2
2,413,792	+		Sama_1986	0.52	+0.2
2,413,793	-		Sama_1986	0.52	-0.9
2,413,831	-		Sama_1986	0.58	-0.1
2,413,831	-		Sama_1986	0.58	-1.4
2,413,831	-		Sama_1986	0.58	-0.6
2,413,831	-		Sama_1986	0.58	-0.3
2,413,844	+		Sama_1986	0.60	-0.4
2,413,854	+		Sama_1986	0.62	-0.5
2,413,855	-		Sama_1986	0.62	-0.6
2,413,855	-		Sama_1986	0.62	+0.9
2,413,889	+		Sama_1986	0.68	-0.7
2,413,889	+		Sama_1986	0.68	-0.8
2,413,889	+		Sama_1986	0.68	+0.5
2,413,889	+		Sama_1986	0.68	-0.1
2,413,890	-		Sama_1986	0.68	+0.6
2,413,897	+		Sama_1986	0.69	+1.2
2,413,897	+		Sama_1986	0.69	+0.5
2,413,897	+		Sama_1986	0.69	+0.0
2,413,898	-		Sama_1986	0.69	+1.2
2,413,898	-		Sama_1986	0.69	-0.4
2,413,898	-		Sama_1986	0.69	+1.0
2,413,898	-		Sama_1986	0.69	-0.6
2,413,898	-		Sama_1986	0.69	-0.6
2,413,898	-		Sama_1986	0.69	-1.4
2,413,956	+		Sama_1986	0.79	+0.8
2,414,108	+				+0.3
2,414,108	+				+1.2
2,414,108	+				+0.4
2,414,109	-				-0.1
2,414,111	+				+0.7
2,414,111	+				+0.8
2,414,111	+				+0.5
2,414,112	-				-0.1
2,414,112	-				+1.2
2,414,128	+				+0.4
2,414,128	+				+0.2
2,414,128	+				-1.1
2,414,129	-				+0.1
2,414,129	-				+0.8
2,414,129	-				+0.5
2,414,174	-				-2.6
2,414,174	-				-0.3
2,414,174	-				-0.0
2,414,174	-				+0.3
2,414,174	-				-0.2
2,414,174	-				+0.1
2,414,206	+				-1.4
2,414,206	+				+0.4
2,414,206	+				-0.2
2,414,207	-				-0.5
2,414,207	-				-1.0
2,414,207	-				-0.6
2,414,207	-				-1.0
2,414,207	-				+1.2
2,414,227	+				-0.8
2,414,227	+				-0.1
2,414,227	+				-1.0
2,414,227	+				+0.5
2,414,227	+				+0.8
2,414,230	+				-0.8
2,414,230	+				-0.4
2,414,230	+				-0.2
2,414,230	+				+0.1
2,414,230	+				-0.1
2,414,231	-				-0.2
2,414,247	-				-0.6
2,414,276	+				-1.1
2,414,276	+				-0.2
2,414,277	-				+1.3
2,414,330	-				-0.1
2,414,350	+				-0.0
2,414,400	-		Sama_1987	0.14	-0.5
2,414,443	+		Sama_1987	0.20	-1.6
2,414,444	-		Sama_1987	0.21	-0.1
2,414,602	-		Sama_1987	0.45	+0.0
2,414,625	+		Sama_1987	0.48	+0.4
2,414,716	-		Sama_1987	0.62	+0.1
2,414,726	+		Sama_1987	0.64	+0.2
2,414,726	+		Sama_1987	0.64	-0.9
2,414,727	-		Sama_1987	0.64	+0.3
2,414,727	-		Sama_1987	0.64	+0.2
2,414,736	+		Sama_1987	0.66	+0.4
2,414,737	-		Sama_1987	0.66	-0.1
2,414,737	-		Sama_1987	0.66	+0.4
2,414,737	-		Sama_1987	0.66	+0.2
2,414,737	-		Sama_1987	0.66	-0.2
2,414,738	+		Sama_1987	0.66	+1.0
2,414,738	+		Sama_1987	0.66	+0.9
2,414,738	+		Sama_1987	0.66	+0.0
2,414,739	-		Sama_1987	0.66	-0.1
2,414,739	-		Sama_1987	0.66	+0.2
2,414,893	+		Sama_1987	0.90	+0.6
2,414,894	-				-1.1
2,414,894	-				+1.0
2,414,937	+				-0.5
2,415,131	-		Sama_1988	0.17	-4.1
2,415,131	-		Sama_1988	0.17	-2.6
2,415,135	-		Sama_1988	0.18	-0.5
2,415,150	-		Sama_1988	0.19	-2.6
2,415,295	-		Sama_1988	0.34	-2.3
2,415,338	+		Sama_1988	0.38	-1.1
2,415,339	-		Sama_1988	0.38	-3.4
2,415,342	+		Sama_1988	0.39	-0.0
2,415,343	-		Sama_1988	0.39	-1.6
2,415,343	-		Sama_1988	0.39	-1.8
2,415,492	+		Sama_1988	0.54	-1.4
2,415,493	-		Sama_1988	0.54	-1.6
2,415,493	-		Sama_1988	0.54	-2.2
2,415,493	-		Sama_1988	0.54	-1.5
2,415,531	-		Sama_1988	0.58	-0.9
2,415,550	+		Sama_1988	0.60	+0.9
2,415,551	-		Sama_1988	0.60	-3.0
2,415,551	-		Sama_1988	0.60	-1.3
2,415,551	-		Sama_1988	0.60	-2.6
2,415,551	-		Sama_1988	0.60	-2.2
2,415,551	-		Sama_1988	0.60	-0.9
2,415,551	-		Sama_1988	0.60	-1.1
2,415,551	-		Sama_1988	0.60	-0.1
2,415,574	-		Sama_1988	0.62	+0.6
2,415,574	-		Sama_1988	0.62	-1.9
2,415,574	-		Sama_1988	0.62	-3.5
2,415,574	-		Sama_1988	0.62	-0.4
2,415,605	+		Sama_1988	0.65	+0.2
2,415,606	-		Sama_1988	0.65	-2.1
2,415,606	-		Sama_1988	0.65	-2.1
2,415,677	+		Sama_1988	0.72	-0.6
2,415,677	+		Sama_1988	0.72	-1.2
2,415,678	-		Sama_1988	0.73	-1.1
2,415,678	-		Sama_1988	0.73	-1.1
2,415,768	-		Sama_1988	0.82	-0.6
2,415,799	+		Sama_1988	0.85	-0.4
2,415,846	-		Sama_1988	0.89	-2.1
2,415,953	+				+0.2
2,415,953	+				-0.8