Strain Fitness in Shewanella amazonensis SB2B around Sama_1826

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
2,221,887	-				-0.4
2,221,943	-				+0.1
2,222,018	-				-0.6
2,222,034	-				-2.5
2,222,049	-				-0.4
2,222,103	-		Sama_1825	0.15	+0.0
2,222,103	-		Sama_1825	0.15	-0.1
2,222,133	-		Sama_1825	0.19	+1.5
2,222,133	-		Sama_1825	0.19	+0.9
2,222,133	-		Sama_1825	0.19	-0.9
2,222,133	-		Sama_1825	0.19	+0.4
2,222,133	-		Sama_1825	0.19	-0.5
2,222,133	-		Sama_1825	0.19	+0.4
2,222,133	-		Sama_1825	0.19	-1.0
2,222,133	-		Sama_1825	0.19	-0.6
2,222,136	+		Sama_1825	0.19	+0.9
2,222,200	+		Sama_1825	0.28	-0.0
2,222,249	+		Sama_1825	0.35	+0.1
2,222,275	+		Sama_1825	0.39	+0.9
2,222,276	-		Sama_1825	0.39	-0.7
2,222,276	-		Sama_1825	0.39	+0.2
2,222,276	-		Sama_1825	0.39	+2.1
2,222,379	-		Sama_1825	0.54	-0.6
2,222,418	-		Sama_1825	0.59	+0.7
2,222,432	+		Sama_1825	0.61	-1.7
2,222,478	+		Sama_1825	0.68	+1.9
2,222,478	+		Sama_1825	0.68	-0.5
2,222,519	+		Sama_1825	0.74	-0.5
2,222,519	+		Sama_1825	0.74	+0.1
2,222,520	-		Sama_1825	0.74	-0.9
2,222,532	+		Sama_1825	0.76	-2.3
2,222,532	+		Sama_1825	0.76	-0.6
2,222,533	-		Sama_1825	0.76	-1.2
2,222,533	-		Sama_1825	0.76	-0.0
2,222,615	+		Sama_1825	0.87	-1.9
2,222,663	-				-0.6
2,222,740	+				-0.7
2,222,741	-				-0.4
2,222,742	+				+0.5
2,222,742	+				+0.5
2,222,743	-				-0.7
2,222,794	+				+0.4
2,222,794	+				-0.5
2,222,795	-				+1.0
2,222,795	-				+0.6
2,222,822	-				-2.2
2,222,826	+				+0.9
2,222,826	+				+0.2
2,222,826	+				+0.1
2,222,826	+				-0.6
2,222,826	+				-0.9
2,222,826	+				-0.0
2,222,826	+				-0.5
2,222,827	-				-1.2
2,222,827	-				-0.5
2,222,827	-				+0.7
2,222,827	-				-0.7
2,222,827	-				+0.9
2,222,827	-				+0.2
2,222,827	-				-0.6
2,222,827	-				+0.5
2,222,827	-				+1.0
2,222,828	+				-0.3
2,222,828	+				+0.9
2,222,829	-				+0.3
2,223,041	+		Sama_1826	0.26	-2.2
2,223,159	+		Sama_1826	0.43	-1.5
2,223,187	+		Sama_1826	0.47	-0.6
2,223,188	-		Sama_1826	0.47	-0.7
2,223,188	-		Sama_1826	0.47	-1.9
2,223,188	-		Sama_1826	0.47	-0.9
2,223,228	-		Sama_1826	0.53	-1.5
2,223,401	+		Sama_1826	0.78	+1.3
2,223,424	+		Sama_1826	0.81	-0.1
2,223,496	+				-2.2
2,223,496	+				+0.8
2,223,518	+				+0.9
2,223,518	+				+0.3
2,223,530	+				+0.3
2,223,589	+				-1.5
2,224,154	+				-2.0
2,224,187	-				+1.1
2,224,187	-				+0.3
2,224,190	+				-0.2
2,224,190	+				+0.9
2,224,190	+				+1.1
2,224,190	+				+0.1
2,224,191	-				-0.2
2,224,378	+				-0.7
2,224,378	+				-0.5
2,224,379	-				+0.3
2,224,379	-				+0.5
2,224,423	-				-0.2
2,224,427	-				-0.6
2,224,427	-				+1.1
2,224,427	-				+0.2
2,224,427	-				-0.9
2,224,486	+		Sama_1828	0.11	-1.1
2,224,486	+		Sama_1828	0.11	-0.9
2,224,487	-		Sama_1828	0.11	-1.3
2,224,487	-		Sama_1828	0.11	-1.2