Strain Fitness in Shewanella amazonensis SB2B around Sama_1619

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
1,980,086	+		Sama_1617	0.67	-0.5
1,980,086	+		Sama_1617	0.67	-0.0
1,980,120	+		Sama_1617	0.70	+0.1
1,980,120	+		Sama_1617	0.70	-1.5
1,980,168	+		Sama_1617	0.75	-1.8
1,980,169	-		Sama_1617	0.75	+0.2
1,980,169	-		Sama_1617	0.75	+0.8
1,980,181	-		Sama_1617	0.77	+0.5
1,980,216	+		Sama_1617	0.80	+0.0
1,980,216	+		Sama_1617	0.80	-1.6
1,980,216	+		Sama_1617	0.80	-0.3
1,980,217	-		Sama_1617	0.80	+0.6
1,980,335	+				-0.5
1,980,335	+				-0.0
1,980,339	-				+0.2
1,980,352	-				-0.7
1,980,367	+				+0.5
1,980,371	+				-0.9
1,980,371	+				-0.6
1,980,372	-				+2.5
1,980,372	-				-0.2
1,980,462	-				-1.2
1,980,475	-				+0.4
1,980,475	-				-0.9
1,980,507	+				-1.4
1,980,507	+				+1.1
1,980,522	+				+0.9
1,980,522	+				+0.4
1,980,523	-				-0.8
1,980,523	-				-0.1
1,980,555	+		Sama_1618	0.14	-0.1
1,980,555	+		Sama_1618	0.14	-0.2
1,980,555	+		Sama_1618	0.14	-0.8
1,980,555	+		Sama_1618	0.14	+0.5
1,980,556	-		Sama_1618	0.14	+1.3
1,980,556	-		Sama_1618	0.14	-0.7
1,980,556	-		Sama_1618	0.14	+0.5
1,980,617	+		Sama_1618	0.29	-0.6
1,980,617	+		Sama_1618	0.29	+0.3
1,980,621	+		Sama_1618	0.30	-1.0
1,980,621	+		Sama_1618	0.30	-1.3
1,980,621	+		Sama_1618	0.30	-0.4
1,980,621	+		Sama_1618	0.30	+1.2
1,980,621	+		Sama_1618	0.30	+0.3
1,980,622	-		Sama_1618	0.30	-0.2
1,980,688	+		Sama_1618	0.46	-0.0
1,980,688	+		Sama_1618	0.46	+0.3
1,980,688	+		Sama_1618	0.46	-0.0
1,980,688	+		Sama_1618	0.46	-0.0
1,980,689	-		Sama_1618	0.46	+1.0
1,980,689	-		Sama_1618	0.46	-1.1
1,980,689	-		Sama_1618	0.46	-0.8
1,980,689	-		Sama_1618	0.46	-0.6
1,980,702	-		Sama_1618	0.49	-0.8
1,980,746	+		Sama_1618	0.60	+0.6
1,980,880	+				+0.5
1,980,880	+				+0.2
1,980,880	+				+0.6
1,980,880	+				-0.3
1,980,880	+				-0.0
1,980,881	-				+0.5
1,980,881	-				-0.3
1,980,881	-				+0.3
1,980,882	+				+0.9
1,980,896	-				-0.8
1,980,925	-				-0.4
1,980,986	+				-0.3
1,980,986	+				-2.3
1,980,986	+				-2.2
1,980,987	-				-1.5
1,981,059	+				-1.2
1,981,060	-				-2.6
1,981,060	-				-1.7
1,981,060	-				-0.8
1,981,060	-				-1.4
1,981,063	+				-3.8
1,981,095	-				-3.7
1,981,117	+				-1.6
1,981,117	+				-1.6
1,981,118	-				-2.3
1,981,521	+		Sama_1619	0.13	-2.6
1,981,521	+		Sama_1619	0.13	-2.1
1,981,521	+		Sama_1619	0.13	-3.8
1,981,523	+		Sama_1619	0.13	-2.4
1,981,524	-		Sama_1619	0.13	-2.6
1,981,524	-		Sama_1619	0.13	-2.4
1,981,572	-		Sama_1619	0.14	-1.8
1,981,576	-		Sama_1619	0.14	-2.9
1,981,587	+		Sama_1619	0.14	-3.5
1,981,588	-		Sama_1619	0.15	-0.8
1,981,599	-		Sama_1619	0.15	-1.7
1,981,641	-		Sama_1619	0.16	-4.2
1,981,650	+		Sama_1619	0.16	-0.1
1,981,651	-		Sama_1619	0.16	-0.2
1,981,654	+		Sama_1619	0.16	-1.4
1,981,654	+		Sama_1619	0.16	+0.2
1,981,834	+		Sama_1619	0.21	-2.2
1,981,973	-		Sama_1619	0.24	-2.4
1,982,097	+		Sama_1619	0.28	-1.2
1,982,140	-		Sama_1619	0.29	-2.5
1,982,175	-		Sama_1619	0.30	-3.3
1,982,175	-		Sama_1619	0.30	-4.0
1,982,175	-		Sama_1619	0.30	-1.2
1,982,232	-		Sama_1619	0.31	-1.4
1,982,237	+		Sama_1619	0.31	-1.4
1,982,238	-		Sama_1619	0.31	-1.3
1,982,396	+		Sama_1619	0.35	-1.9
1,982,519	+		Sama_1619	0.39	-1.1
1,982,697	+		Sama_1619	0.43	+0.2
1,982,697	+		Sama_1619	0.43	-2.4
1,982,697	+		Sama_1619	0.43	-2.7
1,982,698	-		Sama_1619	0.43	-2.6
1,982,698	-		Sama_1619	0.43	-1.6
1,982,760	+		Sama_1619	0.45	-2.0
1,982,799	+		Sama_1619	0.46	-3.0
1,982,799	+		Sama_1619	0.46	-1.9
1,982,799	+		Sama_1619	0.46	-2.3
1,982,799	+		Sama_1619	0.46	-1.9
1,982,799	+		Sama_1619	0.46	-2.4
1,982,800	-		Sama_1619	0.46	-1.8
1,982,800	-		Sama_1619	0.46	-2.8
1,982,800	-		Sama_1619	0.46	-2.7
1,982,800	-		Sama_1619	0.46	-1.5
1,982,800	-		Sama_1619	0.46	-2.2
1,982,846	+		Sama_1619	0.47	-0.8
1,982,847	-		Sama_1619	0.47	-3.6
1,982,862	+		Sama_1619	0.47	-2.5
1,982,934	+		Sama_1619	0.49	-0.8
1,982,934	+		Sama_1619	0.49	-2.8
1,982,935	-		Sama_1619	0.49	-1.4
1,982,935	-		Sama_1619	0.49	+1.2
1,982,935	-		Sama_1619	0.49	-0.8
1,982,961	+		Sama_1619	0.50	-1.1
1,982,961	+		Sama_1619	0.50	-0.2
1,982,962	-		Sama_1619	0.50	-0.8
1,982,965	+		Sama_1619	0.50	-2.8
1,982,966	-		Sama_1619	0.50	-0.8
1,983,024	-		Sama_1619	0.52	-3.9
1,983,101	+		Sama_1619	0.54	-2.1
1,983,102	-		Sama_1619	0.54	-1.6
1,983,102	-		Sama_1619	0.54	-1.2
1,983,175	+		Sama_1619	0.56	-0.1
1,983,175	+		Sama_1619	0.56	+0.6
1,983,177	+		Sama_1619	0.56	-2.2
1,983,177	+		Sama_1619	0.56	-2.4
1,983,185	+		Sama_1619	0.56	-2.9
1,983,185	+		Sama_1619	0.56	-2.4
1,983,186	-		Sama_1619	0.56	-2.8
1,983,399	+		Sama_1619	0.61	-2.2
1,983,400	-		Sama_1619	0.61	-3.3
1,983,426	+		Sama_1619	0.62	-1.8
1,983,426	+		Sama_1619	0.62	-1.3
1,983,426	+		Sama_1619	0.62	-2.8
1,983,427	-		Sama_1619	0.62	-3.7
1,983,427	-		Sama_1619	0.62	-3.0
1,983,470	+		Sama_1619	0.63	-1.4
1,983,470	+		Sama_1619	0.63	-3.7
1,983,470	+		Sama_1619	0.63	-3.4
1,983,470	+		Sama_1619	0.63	-1.4
1,983,471	-		Sama_1619	0.63	-1.8
1,983,471	-		Sama_1619	0.63	-2.4
1,983,471	-		Sama_1619	0.63	-3.0
1,983,510	+		Sama_1619	0.64	-1.9
1,983,510	+		Sama_1619	0.64	-1.1
1,983,510	+		Sama_1619	0.64	-2.8
1,983,510	+		Sama_1619	0.64	-2.4
1,983,510	+		Sama_1619	0.64	-0.8
1,983,510	+		Sama_1619	0.64	-1.9
1,983,510	+		Sama_1619	0.64	-2.3
1,983,556	+		Sama_1619	0.65	-2.2
1,983,556	+		Sama_1619	0.65	-0.8
1,983,556	+		Sama_1619	0.65	-2.8
1,983,557	-		Sama_1619	0.65	-1.8
1,983,574	+		Sama_1619	0.66	+0.2
1,983,725	+		Sama_1619	0.70	-1.3
1,983,726	-		Sama_1619	0.70	-2.8
1,983,726	-		Sama_1619	0.70	-1.4
1,983,753	-		Sama_1619	0.70	-1.3
1,983,753	-		Sama_1619	0.70	-2.4
1,983,774	+		Sama_1619	0.71	-3.3
1,983,797	+		Sama_1619	0.72	-3.0
1,983,798	-		Sama_1619	0.72	-2.2
1,983,798	-		Sama_1619	0.72	-1.2
1,983,842	-		Sama_1619	0.73	-2.0
1,983,842	-		Sama_1619	0.73	-2.4
1,983,865	+		Sama_1619	0.73	-2.2
1,984,107	+		Sama_1619	0.80	-2.4
1,984,107	+		Sama_1619	0.80	-1.4
1,984,107	+		Sama_1619	0.80	-2.8
1,984,108	-		Sama_1619	0.80	-0.8
1,984,108	-		Sama_1619	0.80	-1.4
1,984,108	-		Sama_1619	0.80	-2.2
1,984,293	+		Sama_1619	0.84	-2.8
1,984,294	-		Sama_1619	0.84	-0.7
1,984,339	+		Sama_1619	0.86	-3.6
1,984,339	+		Sama_1619	0.86	-1.8
1,984,339	+		Sama_1619	0.86	-0.4
1,984,339	+		Sama_1619	0.86	-2.6
1,984,339	+		Sama_1619	0.86	-0.4
1,984,339	+		Sama_1619	0.86	-2.4
1,984,339	+		Sama_1619	0.86	-0.8
1,984,339	+		Sama_1619	0.86	-2.8
1,984,339	+		Sama_1619	0.86	-1.7
1,984,339	+		Sama_1619	0.86	-3.1
1,984,339	+		Sama_1619	0.86	-2.3
1,984,339	+		Sama_1619	0.86	-2.3
1,984,339	+		Sama_1619	0.86	-1.5
1,984,340	-		Sama_1619	0.86	-2.4
1,984,340	-		Sama_1619	0.86	-1.4
1,984,340	-		Sama_1619	0.86	-2.2
1,984,340	-		Sama_1619	0.86	-0.4
1,984,340	-		Sama_1619	0.86	-1.1
1,984,340	-		Sama_1619	0.86	+0.2
1,984,340	-		Sama_1619	0.86	-1.2
1,984,384	+		Sama_1619	0.87	-2.4
1,984,385	-		Sama_1619	0.87	-3.5
1,984,385	-		Sama_1619	0.87	-1.8
1,984,385	-		Sama_1619	0.87	-0.8
1,984,388	+		Sama_1619	0.87	-2.0
1,984,389	-		Sama_1619	0.87	-3.9
1,984,423	+		Sama_1619	0.88	-2.2
1,984,424	-		Sama_1619	0.88	-2.4
1,984,435	+		Sama_1619	0.88	-2.4
1,984,444	+		Sama_1619	0.88	-1.8
1,984,444	+		Sama_1619	0.88	-2.6
1,984,444	+		Sama_1619	0.88	-2.3
1,984,445	-		Sama_1619	0.88	-1.2
1,984,481	+		Sama_1619	0.89	-3.2
1,984,579	+				-1.8
1,984,580	-				-2.2
1,984,581	+				-2.9
1,984,581	+				-3.0
1,984,581	+				-3.5
1,984,581	+				-2.6
1,984,582	-				-3.2
1,984,582	-				-2.2
1,984,582	-				-0.2
1,984,582	-				-3.1
1,984,639	+				+0.2
1,984,648	+				-2.2
1,984,648	+				-3.0
1,984,857	-				-1.6
1,984,857	-				-1.2
1,984,893	+				-0.3
1,984,912	+				-0.2
1,984,913	-				-1.1
1,984,956	+				-0.6
1,984,956	+				-0.1
1,984,956	+				+0.6
1,985,008	-				+0.2
1,985,016	-				+0.2
1,985,116	+				-1.6
1,985,116	+				+1.2
1,985,116	+				+0.2
1,985,117	-				+0.8
1,985,117	-				-0.5
1,985,117	-				+1.2
1,985,117	-				+0.2
1,985,117	-				-0.3
1,985,117	-				+0.3
1,985,118	+				+0.6
1,985,118	+				+0.3
1,985,118	+				-0.3
1,985,119	-				+0.3
1,985,119	-				-0.8
1,985,119	-				-0.3
1,985,119	-				+0.9
1,985,119	-				-4.2
1,985,172	-				+0.2
1,985,176	-				-0.5
1,985,181	+				+0.2
1,985,181	+				-0.1
1,985,181	+				-0.1
1,985,181	+				+1.6
1,985,182	-				-0.9
1,985,227	+				+0.6
1,985,227	+				+0.2
1,985,251	+				-0.4
1,985,252	-				-0.3
1,985,252	-				-0.6
1,985,252	-				+0.2
1,985,293	+				+0.2
1,985,474	+		Sama_1620	0.84	+0.9
1,985,475	-		Sama_1620	0.85	-0.4
1,985,475	-		Sama_1620	0.85	-0.0
1,985,529	+				-0.5
1,985,529	+				-0.4
1,985,531	+				-0.1
1,985,531	+				+1.2
1,985,531	+				-0.5
1,985,531	+				-2.2
1,985,532	-				+0.2
1,985,532	-				+1.2
1,985,545	+				+0.8
1,985,545	+				-1.1
1,985,545	+				+0.1
1,985,545	+				+0.8
1,985,619	+				+0.2
1,985,619	+				-0.1
1,985,765	+		Sama_1621	0.81	+2.2
1,985,889	+				+0.2
1,985,889	+				-0.6
1,985,890	-				-0.0