Strain Fitness in Shewanella amazonensis SB2B around Sama_1979
Experiment: Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,407,426 | + | Sama_1978 | 0.51 | -1.1 | |
2,407,482 | - | Sama_1978 | 0.55 | -0.5 | |
2,407,482 | - | Sama_1978 | 0.55 | -1.1 | |
2,407,498 | - | Sama_1978 | 0.57 | +0.3 | |
2,407,532 | + | Sama_1978 | 0.59 | -1.8 | |
2,407,584 | + | Sama_1978 | 0.64 | -1.8 | |
2,407,585 | - | Sama_1978 | 0.64 | -1.1 | |
2,407,585 | - | Sama_1978 | 0.64 | -1.5 | |
2,407,703 | - | Sama_1978 | 0.73 | -1.5 | |
2,407,807 | - | Sama_1978 | 0.82 | -1.8 | |
2,407,852 | - | Sama_1978 | 0.85 | -0.5 | |
2,408,058 | - | -0.0 | |||
2,408,058 | - | -2.3 | |||
2,408,068 | - | -1.7 | |||
2,408,524 | - | -0.2 | |||
2,408,543 | - | +0.4 | |||
2,408,552 | + | -1.1 | |||
2,408,552 | + | -0.4 | |||
2,408,553 | - | +0.7 | |||
2,409,349 | - | +2.5 | |||
2,409,375 | - | -1.1 | |||
2,409,375 | - | +0.0 |
Or see this region's nucleotide sequence