Experiment: Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0162 and Sama_0163 are separated by 317 nucleotides Sama_0163 and Sama_0164 are separated by 68 nucleotides Sama_0164 and Sama_0165 are separated by 79 nucleotides
Sama_0162: Sama_0162 - biopolymer transport protein ExbD/TolR (RefSeq), at 192,484 to 192,888
_0162
Sama_0163: Sama_0163 - hypothetical protein (RefSeq), at 193,206 to 193,613
_0163
Sama_0164: Sama_0164 - no description, at 193,682 to 193,900
_0164
Sama_0165: Sama_0165 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) <small>(from data)</small>, at 193,980 to 195,521
_0165
Position (kb) 193
194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.690 kb on + strand, within Sama_0162 at 192.756 kb on - strand, within Sama_0162 at 192.822 kb on + strand, within Sama_0162 at 192.822 kb on + strand, within Sama_0162 at 192.840 kb on + strand, within Sama_0162 at 192.872 kb on + strand at 192.873 kb on - strand at 192.888 kb on + strand at 192.888 kb on + strand at 192.889 kb on - strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.971 kb on + strand at 192.971 kb on + strand at 192.972 kb on - strand at 192.972 kb on - strand at 192.972 kb on - strand at 192.977 kb on - strand at 192.993 kb on + strand at 193.021 kb on + strand at 193.039 kb on - strand at 193.150 kb on + strand at 193.155 kb on + strand at 193.155 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.173 kb on - strand at 193.183 kb on + strand at 193.183 kb on + strand at 193.184 kb on - strand at 193.184 kb on - strand at 193.200 kb on + strand at 193.200 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.208 kb on - strand at 193.280 kb on + strand, within Sama_0163 at 193.280 kb on + strand, within Sama_0163 at 193.281 kb on - strand, within Sama_0163 at 193.284 kb on - strand, within Sama_0163 at 193.433 kb on - strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.485 kb on - strand, within Sama_0163 at 193.501 kb on + strand, within Sama_0163 at 193.501 kb on + strand, within Sama_0163 at 193.502 kb on - strand, within Sama_0163 at 193.547 kb on + strand, within Sama_0163 at 193.547 kb on + strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.576 kb on + strand at 193.576 kb on + strand at 193.576 kb on + strand at 193.576 kb on + strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.634 kb on - strand at 193.634 kb on - strand at 193.634 kb on - strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.657 kb on + strand at 193.657 kb on + strand at 193.657 kb on + strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.662 kb on + strand at 193.662 kb on + strand at 193.663 kb on - strand at 193.670 kb on + strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.684 kb on - strand at 193.692 kb on + strand at 193.693 kb on - strand at 193.743 kb on + strand, within Sama_0164 at 193.743 kb on + strand, within Sama_0164 at 193.743 kb on + strand, within Sama_0164 at 193.744 kb on - strand, within Sama_0164 at 193.744 kb on - strand, within Sama_0164 at 193.791 kb on + strand, within Sama_0164 at 193.791 kb on + strand, within Sama_0164 at 193.853 kb on + strand, within Sama_0164 at 193.853 kb on + strand, within Sama_0164 at 193.861 kb on + strand, within Sama_0164 at 193.862 kb on - strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.897 kb on + strand at 193.897 kb on + strand at 193.897 kb on + strand at 193.898 kb on - strand at 193.898 kb on - strand at 193.956 kb on - strand at 193.965 kb on + strand at 193.966 kb on - strand at 193.966 kb on - strand at 193.978 kb on + strand at 193.978 kb on + strand at 193.979 kb on - strand at 194.016 kb on + strand at 194.017 kb on - strand at 194.023 kb on + strand at 194.023 kb on + strand at 194.024 kb on - strand at 194.024 kb on - strand at 194.024 kb on - strand at 194.068 kb on + strand at 194.068 kb on + strand at 194.069 kb on - strand at 194.077 kb on + strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.104 kb on - strand at 194.264 kb on - strand, within Sama_0165 at 194.296 kb on + strand, within Sama_0165 at 194.296 kb on + strand, within Sama_0165 at 194.297 kb on - strand, within Sama_0165 at 194.297 kb on - strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.388 kb on - strand, within Sama_0165 at 194.388 kb on - strand, within Sama_0165 at 194.429 kb on + strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.437 kb on - strand, within Sama_0165 at 194.437 kb on - strand, within Sama_0165 at 194.449 kb on + strand, within Sama_0165 at 194.449 kb on + strand, within Sama_0165 at 194.450 kb on - strand, within Sama_0165 at 194.467 kb on + strand, within Sama_0165 at 194.468 kb on - strand, within Sama_0165 at 194.517 kb on + strand, within Sama_0165 at 194.517 kb on + strand, within Sama_0165 at 194.518 kb on - strand, within Sama_0165 at 194.599 kb on + strand, within Sama_0165 at 194.647 kb on - strand, within Sama_0165 at 194.647 kb on - strand, within Sama_0165 at 194.664 kb on + strand, within Sama_0165 at 194.664 kb on + strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.738 kb on + strand, within Sama_0165 at 194.738 kb on + strand, within Sama_0165 at 194.749 kb on + strand, within Sama_0165 at 194.750 kb on - strand, within Sama_0165 at 194.750 kb on - strand, within Sama_0165 at 194.846 kb on + strand, within Sama_0165 at 194.846 kb on + strand, within Sama_0165
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0002 mg/ml remove 192,690 + Sama_0162 0.51 +0.1 192,756 - Sama_0162 0.67 -0.7 192,822 + Sama_0162 0.83 +0.3 192,822 + Sama_0162 0.83 +0.2 192,840 + Sama_0162 0.88 -0.4 192,872 + +0.1 192,873 - +0.6 192,888 + +0.1 192,888 + -0.7 192,889 - -0.4 192,938 + +0.1 192,938 + +1.2 192,938 + -0.0 192,938 + -0.1 192,938 + +0.4 192,938 + -0.1 192,938 + +0.3 192,938 + +1.0 192,938 + +0.2 192,938 + +0.2 192,938 + +0.1 192,938 + +0.1 192,939 - +0.4 192,939 - +0.6 192,939 - -0.1 192,939 - +0.8 192,971 + +0.3 192,971 + -1.0 192,972 - +1.1 192,972 - -0.7 192,972 - -0.1 192,977 - +0.6 192,993 + +0.1 193,021 + +1.3 193,039 - +1.1 193,150 + +0.3 193,155 + +0.1 193,155 + +0.3 193,172 + -0.0 193,172 + -0.0 193,172 + -1.3 193,172 + -0.4 193,172 + +0.0 193,172 + +0.4 193,172 + +1.6 193,173 - -0.2 193,183 + +0.5 193,183 + -0.9 193,184 - +0.0 193,184 - +1.0 193,200 + -0.2 193,200 + +0.2 193,207 + +0.7 193,207 + -0.1 193,207 + -1.3 193,207 + -0.0 193,207 + +0.5 193,208 - -0.0 193,280 + Sama_0163 0.18 +0.2 193,280 + Sama_0163 0.18 +0.1 193,281 - Sama_0163 0.18 -0.7 193,284 - Sama_0163 0.19 -0.0 193,433 - Sama_0163 0.56 +0.7 193,445 + Sama_0163 0.59 -0.0 193,445 + Sama_0163 0.59 +1.1 193,445 + Sama_0163 0.59 +1.1 193,446 - Sama_0163 0.59 -0.5 193,446 - Sama_0163 0.59 +0.9 193,446 - Sama_0163 0.59 +0.7 193,446 - Sama_0163 0.59 +0.9 193,446 - Sama_0163 0.59 +0.0 193,485 - Sama_0163 0.68 -0.0 193,501 + Sama_0163 0.72 -1.3 193,501 + Sama_0163 0.72 +0.6 193,502 - Sama_0163 0.73 -0.1 193,547 + Sama_0163 0.84 +0.8 193,547 + Sama_0163 0.84 -0.1 193,548 - Sama_0163 0.84 +0.2 193,548 - Sama_0163 0.84 +0.2 193,548 - Sama_0163 0.84 -0.2 193,548 - Sama_0163 0.84 -0.3 193,548 - Sama_0163 0.84 +0.2 193,576 + +0.5 193,576 + +0.3 193,576 + +0.0 193,576 + +0.5 193,577 - +0.2 193,577 - -0.4 193,577 - -0.9 193,577 - -0.3 193,577 - -0.2 193,577 - -0.3 193,609 + -1.3 193,609 + +0.3 193,609 + +0.9 193,609 + -0.3 193,609 + +0.8 193,609 + +0.4 193,609 + +1.1 193,609 + +0.9 193,609 + -0.5 193,609 + +0.5 193,609 + +0.5 193,609 + -0.4 193,609 + -0.8 193,609 + -0.3 193,610 - -0.4 193,610 - -0.7 193,610 - -0.2 193,610 - +0.1 193,610 - -0.3 193,610 - -0.2 193,610 - -0.0 193,610 - +0.7 193,610 - -0.5 193,613 + +0.2 193,613 + +0.4 193,613 + +0.1 193,613 + +0.0 193,613 + -0.0 193,613 + +0.9 193,613 + -0.7 193,613 + +0.2 193,613 + -0.0 193,613 + -0.7 193,613 + +1.1 193,613 + -0.2 193,613 + -0.0 193,613 + -0.5 193,613 + -0.3 193,614 - +0.1 193,614 - +0.1 193,614 - +0.2 193,614 - +0.3 193,614 - +1.1 193,614 - +0.2 193,614 - -0.1 193,614 - +1.6 193,614 - +1.1 193,614 - -0.1 193,614 - -0.1 193,614 - +0.7 193,614 - +0.3 193,614 - -0.6 193,614 - +0.5 193,614 - -0.5 193,614 - +0.5 193,614 - -0.8 193,614 - +0.4 193,614 - -0.0 193,614 - +0.3 193,633 + -0.0 193,633 + -0.5 193,633 + +0.2 193,633 + +0.4 193,633 + +0.4 193,634 - -0.4 193,634 - -0.3 193,634 - +1.0 193,637 + +0.7 193,637 + -1.0 193,637 + -0.4 193,637 + +0.8 193,637 + +0.6 193,637 + +0.2 193,637 + -0.5 193,637 + -0.7 193,638 - +0.7 193,638 - -0.1 193,638 - -0.7 193,638 - -0.0 193,638 - +1.5 193,638 - -0.3 193,638 - -0.2 193,638 - +0.5 193,638 - -0.8 193,638 - -0.4 193,657 + -0.4 193,657 + +0.4 193,657 + -1.2 193,658 - -0.0 193,658 - +2.0 193,658 - -0.0 193,658 - +1.4 193,662 + -1.0 193,662 + -0.1 193,663 - -0.3 193,670 + -0.4 193,671 - -0.3 193,671 - -1.1 193,671 - -0.9 193,671 - +0.0 193,684 - +0.1 193,692 + +0.2 193,693 - -0.4 193,743 + Sama_0164 0.28 -0.3 193,743 + Sama_0164 0.28 -0.4 193,743 + Sama_0164 0.28 +1.1 193,744 - Sama_0164 0.28 +0.1 193,744 - Sama_0164 0.28 -1.7 193,791 + Sama_0164 0.50 +0.6 193,791 + Sama_0164 0.50 +0.4 193,853 + Sama_0164 0.78 +0.3 193,853 + Sama_0164 0.78 -0.5 193,861 + Sama_0164 0.82 -0.0 193,862 - Sama_0164 0.82 -1.3 193,868 + Sama_0164 0.85 +0.2 193,868 + Sama_0164 0.85 +0.4 193,868 + Sama_0164 0.85 -1.0 193,868 + Sama_0164 0.85 +0.0 193,868 + Sama_0164 0.85 +0.8 193,868 + Sama_0164 0.85 -1.3 193,869 - Sama_0164 0.85 +0.5 193,869 - Sama_0164 0.85 -1.3 193,869 - Sama_0164 0.85 -0.5 193,869 - Sama_0164 0.85 +0.1 193,869 - Sama_0164 0.85 +1.1 193,887 + -0.3 193,887 + +0.3 193,887 + +0.4 193,897 + +0.7 193,897 + +0.5 193,897 + -0.1 193,898 - +0.3 193,898 - +0.7 193,956 - -0.5 193,965 + +0.5 193,966 - +1.1 193,966 - -0.0 193,978 + -0.4 193,978 + +0.3 193,979 - -1.9 194,016 + +0.2 194,017 - -0.7 194,023 + -0.3 194,023 + +1.3 194,024 - -0.1 194,024 - +0.7 194,024 - -0.0 194,068 + -1.6 194,068 + -0.5 194,069 - +0.8 194,077 + +0.8 194,078 - -1.6 194,078 - -1.8 194,078 - +0.2 194,078 - -0.8 194,104 - +0.3 194,264 - Sama_0165 0.18 +0.7 194,296 + Sama_0165 0.20 +0.3 194,296 + Sama_0165 0.20 -1.1 194,297 - Sama_0165 0.21 -0.8 194,297 - Sama_0165 0.21 +1.2 194,387 + Sama_0165 0.26 -2.1 194,387 + Sama_0165 0.26 -0.3 194,387 + Sama_0165 0.26 +0.5 194,388 - Sama_0165 0.26 +0.0 194,388 - Sama_0165 0.26 +0.4 194,429 + Sama_0165 0.29 -0.5 194,430 - Sama_0165 0.29 -0.7 194,430 - Sama_0165 0.29 -1.5 194,430 - Sama_0165 0.29 -0.1 194,430 - Sama_0165 0.29 +0.1 194,436 + Sama_0165 0.30 -0.5 194,436 + Sama_0165 0.30 +0.6 194,436 + Sama_0165 0.30 +0.5 194,437 - Sama_0165 0.30 +0.4 194,437 - Sama_0165 0.30 +0.1 194,449 + Sama_0165 0.30 -0.0 194,449 + Sama_0165 0.30 +0.0 194,450 - Sama_0165 0.30 +0.1 194,467 + Sama_0165 0.32 +0.7 194,468 - Sama_0165 0.32 -0.6 194,517 + Sama_0165 0.35 +1.7 194,517 + Sama_0165 0.35 -0.9 194,518 - Sama_0165 0.35 -0.1 194,599 + Sama_0165 0.40 -0.6 194,647 - Sama_0165 0.43 -0.3 194,647 - Sama_0165 0.43 +0.2 194,664 + Sama_0165 0.44 +0.9 194,664 + Sama_0165 0.44 -0.8 194,665 - Sama_0165 0.44 +0.3 194,665 - Sama_0165 0.44 +0.1 194,665 - Sama_0165 0.44 -0.0 194,738 + Sama_0165 0.49 +0.2 194,738 + Sama_0165 0.49 +1.1 194,749 + Sama_0165 0.50 -0.8 194,750 - Sama_0165 0.50 -0.5 194,750 - Sama_0165 0.50 -1.3 194,846 + Sama_0165 0.56 -0.6 194,846 + Sama_0165 0.56 +0.3
Or see this region's nucleotide sequence