Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0074 and SO_A0075 are separated by 88 nucleotides SO_A0075 and SOA0076 overlap by 8 nucleotides SOA0076 and SOA0077 are separated by 188 nucleotides
SOA0074: SOA0074 - ISSod6, transposase (NCBI ptt file), at 58,734 to 59,492
SOA0074
SO_A0075: SO_A0075 - no description, at 59,581 to 59,880
_A0075
SOA0076: SOA0076 - conserved domain protein (NCBI ptt file), at 59,873 to 60,157
SOA0076
SOA0077: SOA0077 - site-specific recombinase, resolvase family (NCBI ptt file), at 60,346 to 60,981
SOA0077
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1 at 59.647 kb on + strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.655 kb on - strand, within SO_A0075 at 59.660 kb on + strand, within SO_A0075 at 59.739 kb on + strand, within SO_A0075 at 59.745 kb on - strand, within SO_A0075 at 59.747 kb on - strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.805 kb on + strand, within SO_A0075 at 59.813 kb on - strand, within SO_A0075 at 59.826 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.834 kb on + strand, within SO_A0075 at 59.842 kb on - strand, within SO_A0075 at 59.842 kb on - strand, within SO_A0075 at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.870 kb on + strand at 59.872 kb on + strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.878 kb on - strand at 59.880 kb on + strand at 59.885 kb on + strand at 59.885 kb on + strand at 59.893 kb on - strand at 59.893 kb on - strand at 59.895 kb on + strand at 59.900 kb on + strand at 59.901 kb on - strand at 59.901 kb on - strand at 59.902 kb on - strand, within SOA0076 at 59.906 kb on + strand, within SOA0076 at 59.909 kb on + strand, within SOA0076 at 59.914 kb on - strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.916 kb on + strand, within SOA0076 at 59.917 kb on - strand, within SOA0076 at 59.917 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.924 kb on - strand, within SOA0076 at 59.932 kb on + strand, within SOA0076 at 59.939 kb on + strand, within SOA0076 at 59.945 kb on + strand, within SOA0076 at 59.956 kb on - strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.961 kb on + strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.969 kb on - strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.972 kb on + strand, within SOA0076 at 59.979 kb on + strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.980 kb on - strand, within SOA0076 at 59.987 kb on - strand, within SOA0076 at 60.010 kb on + strand, within SOA0076 at 60.016 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.027 kb on + strand, within SOA0076 at 60.028 kb on + strand, within SOA0076 at 60.029 kb on - strand, within SOA0076 at 60.035 kb on - strand, within SOA0076 at 60.035 kb on - strand, within SOA0076 at 60.045 kb on - strand, within SOA0076 at 60.046 kb on + strand, within SOA0076 at 60.070 kb on + strand, within SOA0076 at 60.074 kb on - strand, within SOA0076 at 60.078 kb on - strand, within SOA0076 at 60.099 kb on + strand, within SOA0076 at 60.131 kb on + strand at 60.136 kb on + strand at 60.152 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.168 kb on - strand at 60.175 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.177 kb on + strand at 60.178 kb on - strand at 60.184 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.185 kb on - strand at 60.288 kb on + strand at 60.293 kb on + strand at 60.293 kb on + strand at 60.301 kb on - strand at 60.301 kb on - strand at 60.306 kb on - strand at 60.334 kb on + strand at 60.345 kb on - strand at 60.353 kb on + strand at 60.359 kb on - strand at 60.359 kb on - strand at 60.359 kb on - strand at 60.361 kb on + strand at 60.365 kb on + strand at 60.365 kb on + strand at 60.369 kb on - strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on + strand at 60.373 kb on - strand at 60.381 kb on - strand at 60.381 kb on - strand at 60.400 kb on + strand at 60.410 kb on + strand, within SOA0077 at 60.417 kb on + strand, within SOA0077 at 60.429 kb on + strand, within SOA0077 at 60.430 kb on + strand, within SOA0077 at 60.437 kb on - strand, within SOA0077 at 60.439 kb on - strand, within SOA0077 at 60.453 kb on + strand, within SOA0077 at 60.489 kb on - strand, within SOA0077 at 60.489 kb on - strand, within SOA0077 at 60.491 kb on + strand, within SOA0077 at 60.500 kb on + strand, within SOA0077 at 60.508 kb on - strand, within SOA0077 at 60.513 kb on - strand, within SOA0077 at 60.544 kb on - strand, within SOA0077 at 60.651 kb on + strand, within SOA0077 at 60.657 kb on - strand, within SOA0077 at 60.659 kb on - strand, within SOA0077 at 60.692 kb on - strand, within SOA0077 at 60.693 kb on - strand, within SOA0077 at 60.713 kb on - strand, within SOA0077 at 60.713 kb on - strand, within SOA0077 at 60.744 kb on - strand, within SOA0077 at 60.769 kb on + strand, within SOA0077 at 60.769 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.777 kb on + strand, within SOA0077 at 60.785 kb on - strand, within SOA0077 at 60.828 kb on + strand, within SOA0077 at 60.871 kb on + strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.876 kb on - strand, within SOA0077 at 60.890 kb on + strand, within SOA0077 at 60.903 kb on - strand, within SOA0077 at 60.957 kb on + strand at 60.982 kb on + strand at 61.027 kb on + strand at 61.080 kb on + strand at 61.088 kb on - strand at 61.088 kb on - strand at 61.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 59,647 + SO_A0075 0.22 -0.1 59,655 - SO_A0075 0.25 +1.0 59,655 - SO_A0075 0.25 -0.2 59,655 - SO_A0075 0.25 +0.4 59,655 - SO_A0075 0.25 -0.1 59,655 - SO_A0075 0.25 +0.1 59,660 + SO_A0075 0.26 -0.8 59,739 + SO_A0075 0.53 +0.2 59,745 - SO_A0075 0.55 -0.5 59,747 - SO_A0075 0.55 -0.2 59,805 + SO_A0075 0.75 -0.1 59,805 + SO_A0075 0.75 +0.1 59,805 + SO_A0075 0.75 +0.1 59,805 + SO_A0075 0.75 +0.7 59,813 - SO_A0075 0.77 -0.2 59,826 + SO_A0075 0.82 -0.2 59,834 + SO_A0075 0.84 +1.1 59,834 + SO_A0075 0.84 +0.1 59,834 + SO_A0075 0.84 -0.2 59,834 + SO_A0075 0.84 +0.0 59,834 + SO_A0075 0.84 +0.5 59,834 + SO_A0075 0.84 -0.1 59,834 + SO_A0075 0.84 -0.3 59,834 + SO_A0075 0.84 +0.5 59,842 - SO_A0075 0.87 -0.4 59,842 - SO_A0075 0.87 +0.4 59,870 + +0.5 59,870 + -0.7 59,870 + +0.1 59,870 + -0.1 59,870 + +0.2 59,870 + -0.4 59,870 + -1.2 59,872 + -0.4 59,878 - +0.5 59,878 - -0.1 59,878 - -0.2 59,878 - -0.1 59,880 + -0.3 59,885 + +0.5 59,885 + -1.1 59,893 - -0.7 59,893 - +0.1 59,895 + -0.6 59,900 + +0.4 59,901 - +0.2 59,901 - +0.9 59,902 - SOA0076 0.10 +0.5 59,906 + SOA0076 0.12 -0.3 59,909 + SOA0076 0.13 +0.0 59,914 - SOA0076 0.14 +0.3 59,916 + SOA0076 0.15 +0.9 59,916 + SOA0076 0.15 +1.0 59,916 + SOA0076 0.15 +0.0 59,916 + SOA0076 0.15 +0.2 59,916 + SOA0076 0.15 -0.1 59,916 + SOA0076 0.15 +0.4 59,916 + SOA0076 0.15 -0.3 59,917 - SOA0076 0.15 +0.6 59,917 - SOA0076 0.15 +0.5 59,924 - SOA0076 0.18 -0.2 59,924 - SOA0076 0.18 +0.1 59,924 - SOA0076 0.18 +0.3 59,924 - SOA0076 0.18 +0.2 59,932 + SOA0076 0.21 +0.2 59,939 + SOA0076 0.23 -0.1 59,945 + SOA0076 0.25 +1.1 59,956 - SOA0076 0.29 +0.6 59,961 + SOA0076 0.31 -0.6 59,961 + SOA0076 0.31 -0.6 59,961 + SOA0076 0.31 -0.1 59,961 + SOA0076 0.31 -0.2 59,961 + SOA0076 0.31 +0.6 59,961 + SOA0076 0.31 -0.1 59,961 + SOA0076 0.31 +0.9 59,961 + SOA0076 0.31 -0.4 59,961 + SOA0076 0.31 +0.5 59,961 + SOA0076 0.31 -0.3 59,961 + SOA0076 0.31 +0.4 59,961 + SOA0076 0.31 -0.2 59,969 - SOA0076 0.34 +1.1 59,969 - SOA0076 0.34 -1.1 59,969 - SOA0076 0.34 +0.7 59,969 - SOA0076 0.34 -0.0 59,969 - SOA0076 0.34 -0.7 59,969 - SOA0076 0.34 -0.4 59,969 - SOA0076 0.34 +0.4 59,969 - SOA0076 0.34 +0.5 59,969 - SOA0076 0.34 +0.3 59,969 - SOA0076 0.34 +0.9 59,969 - SOA0076 0.34 -0.2 59,969 - SOA0076 0.34 +0.1 59,969 - SOA0076 0.34 +0.3 59,969 - SOA0076 0.34 +1.6 59,969 - SOA0076 0.34 -0.1 59,969 - SOA0076 0.34 +0.2 59,972 + SOA0076 0.35 +0.7 59,972 + SOA0076 0.35 -0.9 59,972 + SOA0076 0.35 -0.1 59,972 + SOA0076 0.35 +0.2 59,972 + SOA0076 0.35 +1.3 59,972 + SOA0076 0.35 +0.4 59,972 + SOA0076 0.35 +0.9 59,972 + SOA0076 0.35 -2.1 59,972 + SOA0076 0.35 -0.3 59,972 + SOA0076 0.35 +0.1 59,972 + SOA0076 0.35 -0.7 59,972 + SOA0076 0.35 +0.3 59,972 + SOA0076 0.35 +0.1 59,972 + SOA0076 0.35 -0.2 59,972 + SOA0076 0.35 -0.4 59,972 + SOA0076 0.35 +0.2 59,972 + SOA0076 0.35 +0.8 59,972 + SOA0076 0.35 -0.5 59,972 + SOA0076 0.35 -0.7 59,972 + SOA0076 0.35 +0.6 59,972 + SOA0076 0.35 -0.3 59,972 + SOA0076 0.35 -0.0 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 -0.1 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 +0.2 59,972 + SOA0076 0.35 +0.6 59,972 + SOA0076 0.35 +0.5 59,972 + SOA0076 0.35 +0.4 59,972 + SOA0076 0.35 -0.1 59,979 + SOA0076 0.37 +0.0 59,980 - SOA0076 0.38 +0.4 59,980 - SOA0076 0.38 +0.4 59,980 - SOA0076 0.38 -0.9 59,980 - SOA0076 0.38 +1.0 59,980 - SOA0076 0.38 -0.5 59,980 - SOA0076 0.38 +0.1 59,980 - SOA0076 0.38 +0.7 59,980 - SOA0076 0.38 -0.1 59,980 - SOA0076 0.38 -0.6 59,980 - SOA0076 0.38 -0.8 59,980 - SOA0076 0.38 +0.5 59,980 - SOA0076 0.38 -0.1 59,980 - SOA0076 0.38 +1.5 59,980 - SOA0076 0.38 +0.1 59,980 - SOA0076 0.38 +0.9 59,980 - SOA0076 0.38 +0.3 59,980 - SOA0076 0.38 +0.4 59,980 - SOA0076 0.38 +0.7 59,980 - SOA0076 0.38 +0.2 59,980 - SOA0076 0.38 +0.5 59,980 - SOA0076 0.38 +0.1 59,980 - SOA0076 0.38 -1.3 59,980 - SOA0076 0.38 +0.3 59,980 - SOA0076 0.38 +0.2 59,980 - SOA0076 0.38 +0.2 59,987 - SOA0076 0.40 +0.3 60,010 + SOA0076 0.48 +0.4 60,016 + SOA0076 0.50 +0.6 60,027 + SOA0076 0.54 +1.2 60,027 + SOA0076 0.54 +0.2 60,027 + SOA0076 0.54 +0.4 60,028 + SOA0076 0.54 +0.2 60,029 - SOA0076 0.55 -0.4 60,035 - SOA0076 0.57 +0.3 60,035 - SOA0076 0.57 +0.1 60,045 - SOA0076 0.60 -0.5 60,046 + SOA0076 0.61 +0.7 60,070 + SOA0076 0.69 +0.3 60,074 - SOA0076 0.71 -0.1 60,078 - SOA0076 0.72 -0.1 60,099 + SOA0076 0.79 +0.6 60,131 + -0.6 60,136 + -0.3 60,152 - +0.3 60,168 - +0.1 60,168 - +0.1 60,168 - +0.4 60,168 - +0.1 60,175 + -0.0 60,177 + -0.3 60,177 + -0.3 60,177 + -0.4 60,177 + +0.5 60,177 + -0.6 60,178 - -0.8 60,184 - +0.2 60,185 - +0.2 60,185 - -0.3 60,185 - -0.3 60,185 - +0.6 60,288 + +0.2 60,293 + +0.5 60,293 + +0.0 60,301 - +1.2 60,301 - +0.4 60,306 - -0.2 60,334 + +0.5 60,345 - +0.9 60,353 + +0.1 60,359 - +0.7 60,359 - -0.2 60,359 - +0.2 60,361 + +0.5 60,365 + +1.1 60,365 + -0.9 60,369 - -0.2 60,373 + +0.7 60,373 + +0.4 60,373 + +0.4 60,373 + -0.5 60,373 + -0.6 60,373 + -0.8 60,373 + -0.4 60,373 + -0.7 60,373 - -0.3 60,381 - +0.3 60,381 - -0.0 60,400 + -0.7 60,410 + SOA0077 0.10 +0.2 60,417 + SOA0077 0.11 -0.4 60,429 + SOA0077 0.13 -0.1 60,430 + SOA0077 0.13 +0.7 60,437 - SOA0077 0.14 -1.2 60,439 - SOA0077 0.15 -0.6 60,453 + SOA0077 0.17 -0.1 60,489 - SOA0077 0.22 +1.1 60,489 - SOA0077 0.22 -0.5 60,491 + SOA0077 0.23 +0.1 60,500 + SOA0077 0.24 +0.2 60,508 - SOA0077 0.25 +0.4 60,513 - SOA0077 0.26 +0.3 60,544 - SOA0077 0.31 -0.3 60,651 + SOA0077 0.48 +1.7 60,657 - SOA0077 0.49 -0.6 60,659 - SOA0077 0.49 -0.4 60,692 - SOA0077 0.54 -0.3 60,693 - SOA0077 0.55 -0.7 60,713 - SOA0077 0.58 -0.1 60,713 - SOA0077 0.58 +1.1 60,744 - SOA0077 0.63 -0.3 60,769 + SOA0077 0.67 -0.5 60,769 + SOA0077 0.67 -0.4 60,777 + SOA0077 0.68 -0.1 60,777 + SOA0077 0.68 -0.4 60,777 + SOA0077 0.68 +0.4 60,785 - SOA0077 0.69 +0.3 60,828 + SOA0077 0.76 -0.4 60,871 + SOA0077 0.83 +1.2 60,876 - SOA0077 0.83 +0.3 60,876 - SOA0077 0.83 +0.3 60,876 - SOA0077 0.83 +0.5 60,890 + SOA0077 0.86 +0.0 60,903 - SOA0077 0.88 -0.4 60,957 + +0.0 60,982 + -0.3 61,027 + +0.9 61,080 + +0.1 61,088 - +0.5 61,088 - +0.6 61,114 + +0.3
Or see this region's nucleotide sequence