Strain Fitness in Shewanella oneidensis MR-1 around SO4375

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
4,568,495	-		SO4374	0.36	-0.0
4,568,536	+		SO4374	0.39	+0.2
4,568,545	-		SO4374	0.39	+0.7
4,568,563	-		SO4374	0.40	-0.5
4,568,587	+		SO4374	0.42	-0.2
4,568,590	-		SO4374	0.42	+0.1
4,568,643	+		SO4374	0.46	+0.8
4,568,651	+		SO4374	0.46	-0.3
4,568,671	-		SO4374	0.47	+0.1
4,568,671	-		SO4374	0.47	-0.5
4,568,700	+		SO4374	0.49	-0.3
4,568,764	-		SO4374	0.53	+0.1
4,568,965	+		SO4374	0.66	-0.5
4,569,029	-		SO4374	0.70	+0.2
4,569,093	-		SO4374	0.74	+0.7
4,569,110	+		SO4374	0.75	-0.3
4,569,110	+		SO4374	0.75	+0.5
4,569,110	+		SO4374	0.75	+1.1
4,569,118	-		SO4374	0.76	-0.2
4,569,332	+		SO4374	0.90	-0.3
4,569,362	+				+0.4
4,569,415	+				-0.3
4,569,445	+				+0.9
4,569,484	-				-0.3
4,569,535	+				+0.7
4,569,571	+		SO4375	0.18	+1.3
4,569,624	+		SO4375	0.30	+0.3
4,569,698	+		SO4375	0.47	-0.6
4,569,714	-		SO4375	0.51	+0.3
4,569,716	+		SO4375	0.51	+0.1
4,569,716	+		SO4375	0.51	+0.1
4,569,803	-		SO4375	0.71	+0.1
4,569,812	+		SO4375	0.74	-0.1
4,569,820	-		SO4375	0.75	-0.0
4,569,868	+		SO4375	0.86	-0.9
4,569,913	-				-0.9
4,569,986	+				-0.3
4,569,986	+				-0.0
4,569,994	-				-0.3
4,569,994	-				-0.5
4,569,994	-				+0.0
4,569,994	-				-0.4
4,569,994	-				-0.6
4,570,001	+				-1.9
4,570,004	-				-0.7
4,570,004	-				-0.3
4,570,004	-				-0.7
4,570,011	+		SO4376	0.11	-1.3
4,570,016	+		SO4376	0.11	-0.8
4,570,019	-		SO4376	0.12	-0.6
4,570,019	-		SO4376	0.12	-0.9
4,570,019	-		SO4376	0.12	-0.6
4,570,019	-		SO4376	0.12	+0.0
4,570,019	-		SO4376	0.12	-0.5
4,570,029	+		SO4376	0.13	-0.7
4,570,208	+		SO4376	0.34	-1.7
4,570,237	-		SO4376	0.38	-0.4
4,570,392	+		SO4376	0.56	-1.7
4,570,392	-		SO4376	0.56	-0.4
4,570,395	-		SO4376	0.57	-0.5
4,570,400	-		SO4376	0.57	-0.3
4,570,431	+		SO4376	0.61	-0.4
4,570,560	-		SO4376	0.77	-0.9
4,570,571	+		SO4376	0.78	-0.5
4,570,578	+		SO4376	0.79	-0.4
4,570,578	+		SO4376	0.79	-0.0
4,570,586	-		SO4376	0.80	-0.1
4,570,601	-		SO4376	0.82	+0.1
4,570,619	+		SO4376	0.84	-1.5
4,570,656	-		SO4376	0.88	-0.4
4,570,684	+				-0.1
4,570,887	+				-0.5