Strain Fitness in Shewanella oneidensis MR-1 around SO3355

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
3,497,954	+				-0.3
3,497,974	+				+0.5
3,497,974	+				+0.2
3,497,974	+				+0.1
3,497,974	+				-0.4
3,497,982	-				-1.1
3,498,034	+				+0.2
3,498,063	+				+0.1
3,498,094	+	proC	SO3354	0.11	+0.2
3,498,108	+	proC	SO3354	0.13	-0.5
3,498,108	+	proC	SO3354	0.13	-0.2
3,498,116	-	proC	SO3354	0.14	-0.6
3,498,116	-	proC	SO3354	0.14	-1.0
3,498,178	-	proC	SO3354	0.21	-0.8
3,498,180	+	proC	SO3354	0.22	-0.2
3,498,210	+	proC	SO3354	0.25	-0.5
3,498,238	-	proC	SO3354	0.29	-1.3
3,498,255	+	proC	SO3354	0.31	-1.2
3,498,324	+	proC	SO3354	0.39	+0.0
3,498,346	+	proC	SO3354	0.42	-0.1
3,498,374	-	proC	SO3354	0.45	-1.4
3,498,457	-	proC	SO3354	0.56	-1.3
3,498,590	+	proC	SO3354	0.72	+0.7
3,498,696	+	proC	SO3354	0.85	-0.5
3,498,696	+	proC	SO3354	0.85	-0.4
3,498,704	-	proC	SO3354	0.86	-2.1
3,498,711	-	proC	SO3354	0.87	-3.8
3,498,716	+	proC	SO3354	0.87	+0.6
3,498,920	-				-2.3
3,498,972	+		SO3355	0.14	-2.9
3,499,044	+		SO3355	0.27	-3.7
3,499,044	+		SO3355	0.27	-3.5
3,499,054	+		SO3355	0.29	-2.7
3,499,139	-		SO3355	0.44	-4.5
3,499,266	-		SO3355	0.67	-3.3
3,499,323	+		SO3355	0.78	-4.2
3,499,447	-				+0.1
3,499,447	-				+0.4
3,499,542	+		SO3356	0.33	+0.3
3,499,693	+		SO3356	0.85	-0.4
3,499,701	-		SO3356	0.88	+0.3
3,499,758	+				+0.4
3,499,845	-				+0.2
3,499,908	+		SO3357	0.24	-0.7
3,499,916	-		SO3357	0.26	-0.2
3,499,946	+		SO3357	0.33	+0.6
3,499,954	+		SO3357	0.35	+0.1
3,499,962	-		SO3357	0.37	-0.0
3,500,013	-		SO3357	0.48	-0.3
3,500,123	-		SO3357	0.74	-0.6
3,500,208	-				+0.1
3,500,428	+		SO3358	0.12	+0.1
3,500,436	-		SO3358	0.13	+0.6