Strain Fitness in Shewanella oneidensis MR-1 around SO2247

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
2,360,884	-	dnaQ-1	SO2245	0.46	+0.5
2,361,161	-	dnaQ-1	SO2245	0.89	+1.0
2,361,351	+				+0.2
2,361,471	+				-0.1
2,361,471	+				+0.3
2,361,479	-				+0.2
2,361,479	-				+1.1
2,361,479	-				+0.2
2,361,479	-				-0.2
2,361,502	+				+0.7
2,361,665	+				+0.8
2,361,680	-				+1.0
2,361,854	-		SO2247	0.30	+1.5
2,361,856	+		SO2247	0.30	+1.0
2,361,864	-		SO2247	0.31	+0.6
2,361,875	+		SO2247	0.33	+0.1
2,362,179	+		SO2247	0.74	+0.6
2,362,246	-		SO2247	0.83	+0.8
2,362,322	-				+0.1
2,362,327	-				+0.9
2,362,333	+				-0.3
2,362,471	+				+0.3
2,362,489	-				+0.6
2,362,567	+				-0.6
2,362,577	+				-0.4
2,362,617	-	sdaA	SO2248	0.10	-0.0
2,363,055	-	sdaA	SO2248	0.42	-0.5
2,363,055	-	sdaA	SO2248	0.42	-0.6
2,363,140	-	sdaA	SO2248	0.48	-1.2
2,363,243	+	sdaA	SO2248	0.56	+0.3