Strain Fitness in Shewanella oneidensis MR-1 around SO2239

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
2,354,460	+	ptsI	SO2237	0.71	+1.0
2,354,468	-	ptsI	SO2237	0.72	+0.3
2,354,660	+	ptsI	SO2237	0.83	+1.3
2,354,792	+				+0.6
2,354,892	+				+1.8
2,354,892	-				+0.8
2,354,900	-				+1.1
2,354,907	-				+1.1
2,354,988	-				+1.0
2,355,196	-	ptsH	SO2238	0.84	+1.4
2,355,372	-				+1.3
2,355,494	-		SO2239	0.58	+0.1
2,355,533	-		SO2239	0.68	+0.9
2,355,535	-		SO2239	0.69	+1.0
2,355,725	-				+1.2
2,355,725	-				+0.3
2,355,740	+				+0.7
2,355,833	+				+2.2
2,355,846	+				+1.0
2,355,846	+				+1.3
2,355,854	-				+1.0
2,355,881	-				+0.3
2,355,881	-				+0.6
2,355,964	+				+0.9
2,356,121	+		SO2240	0.18	+0.6
2,356,258	+		SO2240	0.27	-1.0
2,356,378	+		SO2240	0.34	+0.7
2,356,386	+		SO2240	0.35	+0.9
2,356,432	+		SO2240	0.37	+1.4
2,356,438	-		SO2240	0.38	+1.4
2,356,589	+		SO2240	0.47	+0.5
2,356,634	+		SO2240	0.50	+0.7
2,356,634	+		SO2240	0.50	+0.5
2,356,634	+		SO2240	0.50	+0.4
2,356,635	+		SO2240	0.50	-1.0
2,356,635	+		SO2240	0.50	+0.6
2,356,642	-		SO2240	0.50	+1.3
2,356,642	-		SO2240	0.50	+0.8