Strain Fitness in Shewanella oneidensis MR-1 around SO1809

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
1,897,857	+				+0.0
1,897,863	+				-0.8
1,897,891	+				-0.5
1,897,947	+	pspA	SO1807	0.17	-2.1
1,898,142	-	pspA	SO1807	0.46	-0.9
1,898,253	+	pspA	SO1807	0.62	-0.4
1,898,512	+				-0.5
1,898,707	-	pspB	SO1808	0.74	-1.7
1,898,830	+	pspC	SO1809	0.19	-1.5
1,898,830	+	pspC	SO1809	0.19	-0.1
1,898,838	-	pspC	SO1809	0.21	-1.4
1,898,941	-	pspC	SO1809	0.48	-2.9
1,898,961	-	pspC	SO1809	0.53	-1.5
1,898,999	-	pspC	SO1809	0.63	-3.2
1,899,059	-	pspC	SO1809	0.79	-1.5
1,899,481	-		SO1810	0.15	-0.6
1,899,497	-		SO1810	0.17	-0.1
1,899,587	-		SO1810	0.23	+0.3
1,899,589	+		SO1810	0.23	-0.2
1,899,756	-		SO1810	0.34	-0.3
1,900,005	+		SO1810	0.51	-0.6
1,900,034	+		SO1810	0.53	+0.7
1,900,042	-		SO1810	0.54	-0.5
1,900,042	-		SO1810	0.54	+0.8