Strain Fitness in Shewanella oneidensis MR-1 around SO0682

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0680 and SO0681 overlap by 4 nucleotidesSO0681 and SO0682 are separated by 12 nucleotidesSO0682 and SO0683 are separated by 11 nucleotidesSO0683 and SO0684 overlap by 28 nucleotides SO0680: SO0680 - hypothetical protein (NCBI ptt file), at 696,621 to 700,547 SO0680 SO0681: SO0681 - hypothetical protein (NCBI ptt file), at 700,544 to 700,909 SO0681 SO0682: SO0682 - hypothetical protein (NCBI ptt file), at 700,922 to 703,417 SO0682 SO0683: SO0683 - hypothetical protein (NCBI ptt file), at 703,429 to 703,908 SO0683 SO0684: SO0684 - ISSod1, transposase OrfB (NCBI ptt file), at 703,881 to 704,690 SO0684 Position (kb) 700 701 702 703 704Strain fitness (log2 ratio) -2 -1 0 1at 699.924 kb on - strand, within SO0680at 700.016 kb on - strand, within SO0680at 700.065 kb on - strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.086 kb on + strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.094 kb on - strand, within SO0680at 700.096 kb on + strand, within SO0680at 700.104 kb on + strand, within SO0680at 700.163 kb on + strandat 700.182 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.195 kb on - strandat 700.370 kb on + strandat 700.378 kb on - strandat 700.378 kb on - strandat 700.389 kb on - strandat 700.451 kb on + strandat 700.503 kb on - strandat 700.527 kb on - strandat 700.527 kb on - strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.529 kb on + strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.537 kb on - strandat 700.551 kb on + strandat 700.560 kb on - strandat 700.607 kb on + strand, within SO0681at 700.607 kb on + strand, within SO0681at 700.615 kb on - strand, within SO0681at 700.649 kb on - strand, within SO0681at 700.696 kb on - strand, within SO0681at 700.720 kb on + strand, within SO0681at 700.799 kb on - strand, within SO0681at 700.801 kb on + strand, within SO0681at 700.862 kb on - strand, within SO0681at 700.904 kb on + strandat 700.913 kb on - strandat 700.979 kb on - strandat 700.979 kb on - strandat 701.017 kb on + strandat 701.017 kb on + strandat 701.030 kb on - strandat 701.034 kb on - strandat 701.142 kb on + strandat 701.142 kb on + strandat 701.150 kb on - strandat 701.150 kb on - strandat 701.161 kb on + strandat 701.285 kb on - strand, within SO0682at 701.355 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.364 kb on + strand, within SO0682at 701.372 kb on - strand, within SO0682at 701.405 kb on - strand, within SO0682at 701.429 kb on - strand, within SO0682at 701.557 kb on + strand, within SO0682at 701.595 kb on + strand, within SO0682at 701.595 kb on + strand, within SO0682at 701.600 kb on + strand, within SO0682at 701.627 kb on - strand, within SO0682at 701.707 kb on - strand, within SO0682at 701.724 kb on + strand, within SO0682at 701.741 kb on - strand, within SO0682at 701.764 kb on - strand, within SO0682at 701.790 kb on + strand, within SO0682at 701.798 kb on - strand, within SO0682at 701.839 kb on + strand, within SO0682at 701.847 kb on + strand, within SO0682at 701.963 kb on + strand, within SO0682at 702.020 kb on + strand, within SO0682at 702.105 kb on + strand, within SO0682at 702.105 kb on + strand, within SO0682at 702.193 kb on + strand, within SO0682at 702.200 kb on - strand, within SO0682at 702.212 kb on - strand, within SO0682at 702.214 kb on - strand, within SO0682at 702.231 kb on + strand, within SO0682at 702.252 kb on + strand, within SO0682at 702.278 kb on + strand, within SO0682at 702.286 kb on - strand, within SO0682at 702.286 kb on - strand, within SO0682at 702.286 kb on - strand, within SO0682at 702.286 kb on - strand, within SO0682at 702.334 kb on - strand, within SO0682at 702.358 kb on + strand, within SO0682at 702.402 kb on + strand, within SO0682at 702.421 kb on - strand, within SO0682at 702.421 kb on - strand, within SO0682at 702.526 kb on - strand, within SO0682at 702.585 kb on + strand, within SO0682at 702.593 kb on - strand, within SO0682at 702.593 kb on - strand, within SO0682at 702.640 kb on + strand, within SO0682at 702.696 kb on - strand, within SO0682at 702.698 kb on + strand, within SO0682at 702.698 kb on + strand, within SO0682at 702.698 kb on + strand, within SO0682at 702.706 kb on - strand, within SO0682at 702.706 kb on - strand, within SO0682at 702.706 kb on - strand, within SO0682at 702.706 kb on - strand, within SO0682at 702.706 kb on - strand, within SO0682at 702.732 kb on + strand, within SO0682at 702.732 kb on + strand, within SO0682at 702.758 kb on + strand, within SO0682at 702.790 kb on + strand, within SO0682at 702.853 kb on - strand, within SO0682at 702.923 kb on + strand, within SO0682at 702.931 kb on - strand, within SO0682at 703.066 kb on + strand, within SO0682at 703.086 kb on - strand, within SO0682at 703.186 kb on - strandat 703.278 kb on - strandat 703.295 kb on + strandat 703.298 kb on - strandat 703.347 kb on + strandat 703.386 kb on - strandat 703.399 kb on - strandat 703.410 kb on + strandat 703.432 kb on - strandat 703.432 kb on - strandat 703.457 kb on + strandat 703.487 kb on - strand, within SO0683at 703.490 kb on - strand, within SO0683at 703.496 kb on + strand, within SO0683at 703.664 kb on - strand, within SO0683at 703.681 kb on + strand, within SO0683at 703.748 kb on - strand, within SO0683at 703.755 kb on - strand, within SO0683at 703.825 kb on - strand, within SO0683at 703.872 kb on - strandat 703.877 kb on - strandat 703.877 kb on - strandat 703.877 kb on - strandat 703.877 kb on - strandat 703.877 kb on - strandat 703.882 kb on - strandat 703.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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699,924 - SO0680 0.84 +0.1
700,016 - SO0680 0.86 +1.1
700,065 - SO0680 0.88 -0.1
700,086 + SO0680 0.88 -0.4
700,086 + SO0680 0.88 -0.1
700,086 + SO0680 0.88 +0.6
700,094 - SO0680 0.88 -0.1
700,094 - SO0680 0.88 +0.6
700,094 - SO0680 0.88 -2.3
700,096 + SO0680 0.88 -0.2
700,104 + SO0680 0.89 +1.1
700,163 + -0.1
700,182 - +0.1
700,195 - -0.0
700,195 - +0.7
700,195 - +0.5
700,370 + +0.3
700,378 - +0.4
700,378 - +0.1
700,389 - +0.5
700,451 + -0.9
700,503 - -0.2
700,527 - -0.8
700,527 - -0.7
700,529 + +0.5
700,529 + -0.1
700,529 + +0.1
700,537 - +0.4
700,537 - +0.3
700,537 - +0.4
700,537 - -0.3
700,537 - +0.7
700,537 - -0.2
700,551 + +0.0
700,560 - +0.1
700,607 + SO0681 0.17 +0.1
700,607 + SO0681 0.17 -0.2
700,615 - SO0681 0.19 +1.1
700,649 - SO0681 0.29 +0.1
700,696 - SO0681 0.42 +0.1
700,720 + SO0681 0.48 +0.5
700,799 - SO0681 0.70 +0.1
700,801 + SO0681 0.70 +0.2
700,862 - SO0681 0.87 +0.4
700,904 + -0.2
700,913 - +0.2
700,979 - +0.2
700,979 - -0.1
701,017 + -0.1
701,017 + -0.1
701,030 - -0.3
701,034 - +0.1
701,142 + -0.3
701,142 + +0.4
701,150 - +0.1
701,150 - -0.4
701,161 + +0.0
701,285 - SO0682 0.15 -0.8
701,355 + SO0682 0.17 -1.8
701,364 + SO0682 0.18 -0.2
701,364 + SO0682 0.18 -0.1
701,372 - SO0682 0.18 -0.2
701,405 - SO0682 0.19 -0.1
701,429 - SO0682 0.20 -0.0
701,557 + SO0682 0.25 +0.5
701,595 + SO0682 0.27 +0.0
701,595 + SO0682 0.27 -0.1
701,600 + SO0682 0.27 -0.0
701,627 - SO0682 0.28 -0.2
701,707 - SO0682 0.31 -0.1
701,724 + SO0682 0.32 +0.3
701,741 - SO0682 0.33 -0.1
701,764 - SO0682 0.34 -0.6
701,790 + SO0682 0.35 -0.4
701,798 - SO0682 0.35 -0.0
701,839 + SO0682 0.37 -0.7
701,847 + SO0682 0.37 +0.0
701,963 + SO0682 0.42 +0.1
702,020 + SO0682 0.44 +0.8
702,105 + SO0682 0.47 -0.0
702,105 + SO0682 0.47 +0.5
702,193 + SO0682 0.51 +0.7
702,200 - SO0682 0.51 -0.2
702,212 - SO0682 0.52 -0.5
702,214 - SO0682 0.52 +0.1
702,231 + SO0682 0.52 +0.4
702,252 + SO0682 0.53 +0.0
702,278 + SO0682 0.54 -0.1
702,286 - SO0682 0.55 -0.0
702,286 - SO0682 0.55 +0.1
702,286 - SO0682 0.55 +0.1
702,286 - SO0682 0.55 -0.1
702,334 - SO0682 0.57 +0.0
702,358 + SO0682 0.58 -0.5
702,402 + SO0682 0.59 -1.9
702,421 - SO0682 0.60 +0.2
702,421 - SO0682 0.60 -0.3
702,526 - SO0682 0.64 +1.1
702,585 + SO0682 0.67 -0.4
702,593 - SO0682 0.67 -1.1
702,593 - SO0682 0.67 +0.3
702,640 + SO0682 0.69 -0.4
702,696 - SO0682 0.71 -0.5
702,698 + SO0682 0.71 -0.2
702,698 + SO0682 0.71 -0.3
702,698 + SO0682 0.71 -0.4
702,706 - SO0682 0.71 +0.2
702,706 - SO0682 0.71 +0.4
702,706 - SO0682 0.71 -0.3
702,706 - SO0682 0.71 +0.1
702,706 - SO0682 0.71 -0.2
702,732 + SO0682 0.73 -0.5
702,732 + SO0682 0.73 -1.2
702,758 + SO0682 0.74 -0.2
702,790 + SO0682 0.75 -0.7
702,853 - SO0682 0.77 -0.4
702,923 + SO0682 0.80 -0.2
702,931 - SO0682 0.80 +0.4
703,066 + SO0682 0.86 -0.6
703,086 - SO0682 0.87 -0.2
703,186 - +0.9
703,278 - +0.3
703,295 + -0.2
703,298 - +0.4
703,347 + +0.0
703,386 - -0.1
703,399 - +0.3
703,410 + -0.2
703,432 - +0.3
703,432 - +0.2
703,457 + -0.2
703,487 - SO0683 0.12 -0.7
703,490 - SO0683 0.13 +0.3
703,496 + SO0683 0.14 +0.0
703,664 - SO0683 0.49 -0.0
703,681 + SO0683 0.53 +0.5
703,748 - SO0683 0.66 +0.3
703,755 - SO0683 0.68 -0.5
703,825 - SO0683 0.82 +0.0
703,872 - +0.6
703,877 - -0.3
703,877 - +0.7
703,877 - +1.0
703,877 - -0.0
703,877 - +0.3
703,882 - +0.0
703,892 - +0.3

Or see this region's nucleotide sequence