Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0917 and Psest_0918 are separated by 356 nucleotides Psest_0918 and Psest_0919 are separated by 112 nucleotides
Psest_0917: Psest_0917 - SEC-C motif., at 996,938 to 998,293
_0917
Psest_0918: Psest_0918 - Predicted permease, DMT superfamily, at 998,650 to 999,558
_0918
Psest_0919: Psest_0919 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 999,671 to 1,000,627
_0919
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 997.682 kb on - strand, within Psest_0917 at 997.704 kb on + strand, within Psest_0917 at 997.768 kb on - strand, within Psest_0917 at 997.878 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.884 kb on + strand, within Psest_0917 at 997.885 kb on - strand, within Psest_0917 at 997.888 kb on + strand, within Psest_0917 at 997.952 kb on + strand, within Psest_0917 at 997.990 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.018 kb on + strand, within Psest_0917 at 998.022 kb on + strand, within Psest_0917 at 998.023 kb on - strand, within Psest_0917 at 998.055 kb on + strand, within Psest_0917 at 998.080 kb on + strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.081 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.089 kb on - strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.129 kb on + strand, within Psest_0917 at 998.130 kb on - strand, within Psest_0917 at 998.270 kb on + strand at 998.270 kb on + strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.271 kb on - strand at 998.325 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.354 kb on + strand at 998.447 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.486 kb on + strand at 998.487 kb on - strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.668 kb on + strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.669 kb on - strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.672 kb on + strand at 998.673 kb on - strand at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.756 kb on + strand, within Psest_0918 at 998.767 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.861 kb on + strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.862 kb on - strand, within Psest_0918 at 998.867 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.954 kb on + strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 998.955 kb on - strand, within Psest_0918 at 999.047 kb on - strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.127 kb on + strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.128 kb on - strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.156 kb on + strand, within Psest_0918 at 999.157 kb on - strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.160 kb on + strand, within Psest_0918 at 999.161 kb on - strand, within Psest_0918 at 999.196 kb on - strand, within Psest_0918 at 999.237 kb on + strand, within Psest_0918 at 999.316 kb on + strand, within Psest_0918 at 999.317 kb on - strand, within Psest_0918 at 999.362 kb on + strand, within Psest_0918 at 999.373 kb on + strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.374 kb on - strand, within Psest_0918 at 999.497 kb on + strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.498 kb on - strand at 999.561 kb on - strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.652 kb on + strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.653 kb on - strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.654 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.679 kb on + strand at 999.680 kb on - strand at 999.680 kb on - strand at 999.734 kb on + strand at 999.734 kb on + strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 999.735 kb on - strand at 1000.123 kb on + strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.124 kb on - strand, within Psest_0919 at 1000.260 kb on + strand, within Psest_0919
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 997,682 - Psest_0917 0.55 -0.4 997,704 + Psest_0917 0.56 -0.5 997,768 - Psest_0917 0.61 -2.4 997,878 + Psest_0917 0.69 -1.4 997,884 + Psest_0917 0.70 -0.7 997,884 + Psest_0917 0.70 -2.1 997,884 + Psest_0917 0.70 -0.4 997,884 + Psest_0917 0.70 -2.2 997,885 - Psest_0917 0.70 -2.8 997,888 + Psest_0917 0.70 -0.1 997,952 + Psest_0917 0.75 +0.0 997,990 + Psest_0917 0.78 -0.3 998,018 + Psest_0917 0.80 +1.5 998,018 + Psest_0917 0.80 +0.0 998,022 + Psest_0917 0.80 -1.3 998,023 - Psest_0917 0.80 -0.9 998,055 + Psest_0917 0.82 +0.5 998,080 + Psest_0917 0.84 -0.4 998,081 - Psest_0917 0.84 -1.4 998,081 - Psest_0917 0.84 -1.4 998,089 - Psest_0917 0.85 -3.6 998,089 - Psest_0917 0.85 +0.1 998,089 - Psest_0917 0.85 -2.3 998,129 + Psest_0917 0.88 -2.6 998,129 + Psest_0917 0.88 -0.4 998,130 - Psest_0917 0.88 -3.3 998,270 + -0.0 998,270 + +0.7 998,271 - -1.2 998,271 - -0.9 998,271 - -1.0 998,325 + +1.1 998,354 + +1.0 998,354 + +1.9 998,354 + -0.4 998,354 + +0.6 998,447 + +0.2 998,486 + -1.2 998,486 + -0.6 998,486 + +0.4 998,486 + -0.1 998,487 - -1.1 998,668 + -1.0 998,668 + -1.0 998,668 + -1.5 998,668 + -1.1 998,668 + +0.2 998,668 + -0.6 998,668 + -2.6 998,668 + -2.7 998,668 + -1.3 998,668 + -1.4 998,669 - +0.3 998,669 - -1.6 998,669 - -0.7 998,669 - -1.0 998,669 - -0.3 998,669 - -2.6 998,669 - -1.7 998,669 - -0.9 998,669 - +2.1 998,669 - -0.5 998,669 - -1.4 998,672 + +0.2 998,672 + -1.4 998,672 + +0.1 998,672 + -1.1 998,672 + -3.8 998,672 + -1.3 998,672 + -1.4 998,672 + -1.6 998,672 + -0.2 998,672 + -0.9 998,672 + -2.1 998,673 - -1.9 998,756 + Psest_0918 0.12 -0.8 998,756 + Psest_0918 0.12 -2.0 998,756 + Psest_0918 0.12 -2.9 998,756 + Psest_0918 0.12 +1.0 998,767 + Psest_0918 0.13 -4.6 998,861 + Psest_0918 0.23 -0.2 998,861 + Psest_0918 0.23 -0.8 998,862 - Psest_0918 0.23 -0.2 998,862 - Psest_0918 0.23 -2.9 998,862 - Psest_0918 0.23 -2.7 998,867 + Psest_0918 0.24 -3.7 998,954 + Psest_0918 0.33 +2.4 998,954 + Psest_0918 0.33 -1.3 998,954 + Psest_0918 0.33 +0.0 998,954 + Psest_0918 0.33 -2.0 998,954 + Psest_0918 0.33 +0.3 998,954 + Psest_0918 0.33 -0.6 998,954 + Psest_0918 0.33 -1.6 998,954 + Psest_0918 0.33 -1.8 998,954 + Psest_0918 0.33 -1.1 998,954 + Psest_0918 0.33 -1.6 998,954 + Psest_0918 0.33 -3.7 998,954 + Psest_0918 0.33 +1.6 998,954 + Psest_0918 0.33 -0.6 998,955 - Psest_0918 0.34 +0.6 998,955 - Psest_0918 0.34 -1.9 998,955 - Psest_0918 0.34 -0.5 998,955 - Psest_0918 0.34 -0.0 998,955 - Psest_0918 0.34 +0.5 998,955 - Psest_0918 0.34 -0.7 998,955 - Psest_0918 0.34 -1.7 998,955 - Psest_0918 0.34 -1.2 998,955 - Psest_0918 0.34 +0.4 998,955 - Psest_0918 0.34 +0.9 998,955 - Psest_0918 0.34 -0.6 998,955 - Psest_0918 0.34 -1.2 998,955 - Psest_0918 0.34 +0.0 999,047 - Psest_0918 0.44 +1.7 999,127 + Psest_0918 0.52 +0.4 999,127 + Psest_0918 0.52 -1.4 999,127 + Psest_0918 0.52 -1.5 999,127 + Psest_0918 0.52 -0.6 999,127 + Psest_0918 0.52 -0.4 999,127 + Psest_0918 0.52 -1.9 999,127 + Psest_0918 0.52 -1.7 999,127 + Psest_0918 0.52 +2.8 999,127 + Psest_0918 0.52 -1.4 999,127 + Psest_0918 0.52 -1.4 999,127 + Psest_0918 0.52 -0.9 999,127 + Psest_0918 0.52 +0.2 999,128 - Psest_0918 0.53 -1.5 999,128 - Psest_0918 0.53 -1.0 999,128 - Psest_0918 0.53 -1.1 999,156 + Psest_0918 0.56 +0.8 999,156 + Psest_0918 0.56 -1.4 999,156 + Psest_0918 0.56 -0.1 999,157 - Psest_0918 0.56 -1.2 999,160 + Psest_0918 0.56 -1.4 999,160 + Psest_0918 0.56 -0.5 999,160 + Psest_0918 0.56 -2.5 999,160 + Psest_0918 0.56 -0.6 999,161 - Psest_0918 0.56 -1.5 999,196 - Psest_0918 0.60 -1.9 999,237 + Psest_0918 0.65 -0.8 999,316 + Psest_0918 0.73 -0.1 999,317 - Psest_0918 0.73 +0.0 999,362 + Psest_0918 0.78 -0.7 999,373 + Psest_0918 0.80 -1.4 999,374 - Psest_0918 0.80 -0.8 999,374 - Psest_0918 0.80 -1.0 999,497 + +1.2 999,498 - -0.7 999,498 - -2.1 999,498 - -2.9 999,561 - -1.6 999,652 + +0.4 999,652 + -1.0 999,652 + -0.2 999,652 + -0.7 999,653 - -0.9 999,653 - -2.5 999,653 - -0.1 999,653 - +1.1 999,654 + -0.2 999,654 + -0.3 999,654 + -0.5 999,654 + -2.1 999,679 + +0.5 999,679 + -3.4 999,679 + -0.2 999,679 + -1.8 999,679 + -1.8 999,680 - -0.2 999,680 - -1.0 999,734 + -0.6 999,734 + -1.8 999,735 - -0.5 999,735 - -1.0 999,735 - -0.9 999,735 - -0.4 999,735 - -0.1 1,000,123 + Psest_0919 0.47 +0.8 1,000,124 - Psest_0919 0.47 +0.2 1,000,124 - Psest_0919 0.47 +2.2 1,000,260 + Psest_0919 0.62 +0.2
Or see this region's nucleotide sequence