Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0061 and Psest_0062 are separated by 175 nucleotides Psest_0062 and Psest_0063 overlap by 4 nucleotides Psest_0063 and Psest_0064 are separated by 171 nucleotides
Psest_0061: Psest_0061 - hypothetical protein, at 61,457 to 61,786
_0061
Psest_0062: Psest_0062 - tryptophan synthase, alpha subunit, at 61,962 to 62,771
_0062
Psest_0063: Psest_0063 - tryptophan synthase, beta subunit, at 62,768 to 63,979
_0063
Psest_0064: Psest_0064 - Transcriptional regulator, at 64,151 to 65,053
_0064
Position (kb) 62
63
64 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 61.896 kb on + strand at 61.897 kb on - strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.901 kb on - strand at 61.980 kb on + strand at 61.980 kb on + strand at 61.981 kb on - strand at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.245 kb on + strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.246 kb on - strand, within Psest_0062 at 62.248 kb on + strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.249 kb on - strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.464 kb on + strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.465 kb on - strand, within Psest_0062 at 62.684 kb on - strand, within Psest_0062 at 62.992 kb on - strand, within Psest_0063 at 62.992 kb on - strand, within Psest_0063 at 63.405 kb on + strand, within Psest_0063 at 63.405 kb on + strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.406 kb on - strand, within Psest_0063 at 63.564 kb on + strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.565 kb on - strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.741 kb on + strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.742 kb on - strand, within Psest_0063 at 63.787 kb on - strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.810 kb on + strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.811 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 63.826 kb on - strand, within Psest_0063 at 64.086 kb on + strand at 64.150 kb on + strand at 64.150 kb on + strand at 64.209 kb on + strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.210 kb on - strand at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.829 kb on + strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064 at 64.830 kb on - strand, within Psest_0064
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 61,896 + +1.9 61,897 - -0.5 61,900 + +0.3 61,900 + -0.5 61,900 + +2.4 61,901 - -1.7 61,901 - -2.1 61,901 - +1.1 61,901 - -0.9 61,901 - -1.1 61,980 + -2.3 61,980 + +0.9 61,981 - +0.6 62,245 + Psest_0062 0.35 -2.3 62,245 + Psest_0062 0.35 -3.5 62,245 + Psest_0062 0.35 -2.1 62,245 + Psest_0062 0.35 -2.5 62,246 - Psest_0062 0.35 -0.7 62,246 - Psest_0062 0.35 -3.7 62,246 - Psest_0062 0.35 -1.1 62,246 - Psest_0062 0.35 -2.1 62,246 - Psest_0062 0.35 -2.6 62,248 + Psest_0062 0.35 -3.0 62,249 - Psest_0062 0.35 -1.1 62,249 - Psest_0062 0.35 -1.9 62,249 - Psest_0062 0.35 -0.7 62,464 + Psest_0062 0.62 -5.8 62,464 + Psest_0062 0.62 -4.0 62,464 + Psest_0062 0.62 -4.8 62,465 - Psest_0062 0.62 -2.6 62,465 - Psest_0062 0.62 -3.3 62,465 - Psest_0062 0.62 -4.9 62,465 - Psest_0062 0.62 -4.0 62,465 - Psest_0062 0.62 -2.3 62,465 - Psest_0062 0.62 -1.5 62,465 - Psest_0062 0.62 +0.9 62,465 - Psest_0062 0.62 -3.3 62,465 - Psest_0062 0.62 -3.3 62,465 - Psest_0062 0.62 -1.1 62,465 - Psest_0062 0.62 -3.2 62,465 - Psest_0062 0.62 -1.1 62,684 - Psest_0062 0.89 -5.8 62,992 - Psest_0063 0.18 -2.5 62,992 - Psest_0063 0.18 -2.9 63,405 + Psest_0063 0.53 +0.9 63,405 + Psest_0063 0.53 -1.7 63,406 - Psest_0063 0.53 -2.8 63,406 - Psest_0063 0.53 -0.9 63,406 - Psest_0063 0.53 -3.6 63,406 - Psest_0063 0.53 -3.2 63,406 - Psest_0063 0.53 -1.9 63,406 - Psest_0063 0.53 -0.7 63,406 - Psest_0063 0.53 -1.5 63,406 - Psest_0063 0.53 -2.8 63,564 + Psest_0063 0.66 -2.8 63,565 - Psest_0063 0.66 -0.1 63,565 - Psest_0063 0.66 -3.7 63,565 - Psest_0063 0.66 -1.5 63,565 - Psest_0063 0.66 -0.7 63,565 - Psest_0063 0.66 -2.1 63,741 + Psest_0063 0.80 -1.9 63,741 + Psest_0063 0.80 -1.1 63,741 + Psest_0063 0.80 +0.9 63,741 + Psest_0063 0.80 -0.7 63,741 + Psest_0063 0.80 -2.3 63,742 - Psest_0063 0.80 -3.1 63,742 - Psest_0063 0.80 -2.1 63,742 - Psest_0063 0.80 -0.7 63,742 - Psest_0063 0.80 -2.1 63,787 - Psest_0063 0.84 -0.1 63,810 + Psest_0063 0.86 +0.9 63,810 + Psest_0063 0.86 +0.9 63,810 + Psest_0063 0.86 -2.7 63,810 + Psest_0063 0.86 -4.3 63,810 + Psest_0063 0.86 +0.9 63,810 + Psest_0063 0.86 +0.9 63,810 + Psest_0063 0.86 -0.1 63,810 + Psest_0063 0.86 -1.1 63,811 - Psest_0063 0.86 -0.1 63,811 - Psest_0063 0.86 -2.1 63,826 - Psest_0063 0.87 -4.2 63,826 - Psest_0063 0.87 -3.0 64,086 + +0.9 64,150 + -0.7 64,150 + +0.5 64,209 + +0.9 64,210 - -2.0 64,210 - -0.8 64,210 - -1.1 64,829 + Psest_0064 0.75 +0.9 64,829 + Psest_0064 0.75 -0.1 64,829 + Psest_0064 0.75 +1.9 64,829 + Psest_0064 0.75 -0.7 64,830 - Psest_0064 0.75 -1.3 64,830 - Psest_0064 0.75 +0.9 64,830 - Psest_0064 0.75 +1.9 64,830 - Psest_0064 0.75 +1.4 64,830 - Psest_0064 0.75 +0.9
Or see this region's nucleotide sequence