Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0539

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0538 and Psest_0539 are separated by 130 nucleotidesPsest_0539 and Psest_0540 are separated by 20 nucleotides Psest_0538: Psest_0538 - Signal transduction histidine kinase, at 590,997 to 592,997 _0538 Psest_0539: Psest_0539 - Acyl-CoA dehydrogenases, at 593,128 to 594,774 _0539 Psest_0540: Psest_0540 - Ion transport protein., at 594,795 to 595,637 _0540 Position (kb) 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 592.154 kb on + strand, within Psest_0538at 592.154 kb on + strand, within Psest_0538at 592.154 kb on + strand, within Psest_0538at 592.154 kb on + strand, within Psest_0538at 592.155 kb on - strand, within Psest_0538at 592.155 kb on - strand, within Psest_0538at 592.362 kb on + strand, within Psest_0538at 592.363 kb on - strand, within Psest_0538at 592.363 kb on - strandat 592.412 kb on + strand, within Psest_0538at 592.412 kb on + strand, within Psest_0538at 592.412 kb on + strand, within Psest_0538at 592.413 kb on - strand, within Psest_0538at 592.582 kb on - strand, within Psest_0538at 592.582 kb on - strand, within Psest_0538at 592.764 kb on + strand, within Psest_0538at 592.764 kb on + strand, within Psest_0538at 592.765 kb on - strand, within Psest_0538at 592.765 kb on - strand, within Psest_0538at 593.079 kb on + strandat 593.080 kb on - strandat 593.126 kb on - strandat 593.126 kb on - strandat 593.434 kb on - strand, within Psest_0539at 593.497 kb on + strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.498 kb on - strand, within Psest_0539at 593.548 kb on + strand, within Psest_0539at 593.548 kb on + strand, within Psest_0539at 593.549 kb on - strand, within Psest_0539at 593.549 kb on - strand, within Psest_0539at 593.549 kb on - strand, within Psest_0539at 593.549 kb on - strand, within Psest_0539at 593.623 kb on + strand, within Psest_0539at 593.765 kb on - strand, within Psest_0539at 593.765 kb on - strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.899 kb on + strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.900 kb on - strand, within Psest_0539at 593.901 kb on + strand, within Psest_0539at 594.289 kb on + strand, within Psest_0539at 594.289 kb on + strand, within Psest_0539at 594.290 kb on - strand, within Psest_0539at 594.290 kb on - strand, within Psest_0539at 594.290 kb on - strand, within Psest_0539at 594.290 kb on - strand, within Psest_0539at 594.356 kb on - strand, within Psest_0539at 594.356 kb on - strand, within Psest_0539at 594.816 kb on + strandat 595.033 kb on + strand, within Psest_0540at 595.034 kb on - strand, within Psest_0540at 595.108 kb on + strand, within Psest_0540at 595.109 kb on - strand, within Psest_0540at 595.109 kb on - strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.186 kb on + strand, within Psest_0540at 595.187 kb on - strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.417 kb on + strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.418 kb on - strand, within Psest_0540at 595.644 kb on + strandat 595.644 kb on + strandat 595.644 kb on + strandat 595.644 kb on + strandat 595.644 kb on + strandat 595.645 kb on - strandat 595.697 kb on + strandat 595.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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592,154 + Psest_0538 0.58 +1.5
592,154 + Psest_0538 0.58 +1.9
592,154 + Psest_0538 0.58 +1.6
592,154 + Psest_0538 0.58 +1.1
592,155 - Psest_0538 0.58 +1.8
592,155 - Psest_0538 0.58 +2.4
592,362 + Psest_0538 0.68 +1.8
592,363 - Psest_0538 0.68 +1.3
592,363 - -0.1
592,412 + Psest_0538 0.71 +0.8
592,412 + Psest_0538 0.71 +1.1
592,412 + Psest_0538 0.71 +1.5
592,413 - Psest_0538 0.71 +2.5
592,582 - Psest_0538 0.79 +2.1
592,582 - Psest_0538 0.79 +1.3
592,764 + Psest_0538 0.88 +0.4
592,764 + Psest_0538 0.88 +1.3
592,765 - Psest_0538 0.88 +2.3
592,765 - Psest_0538 0.88 +1.3
593,079 + -0.3
593,080 - -2.0
593,126 - +1.1
593,126 - +1.4
593,434 - Psest_0539 0.19 +0.4
593,497 + Psest_0539 0.22 -0.9
593,498 - Psest_0539 0.22 +1.1
593,498 - Psest_0539 0.22 +1.6
593,498 - Psest_0539 0.22 +2.1
593,498 - Psest_0539 0.22 +3.3
593,498 - Psest_0539 0.22 +1.7
593,498 - Psest_0539 0.22 +0.6
593,498 - Psest_0539 0.22 +1.7
593,498 - Psest_0539 0.22 +0.7
593,498 - Psest_0539 0.22 +0.1
593,548 + Psest_0539 0.26 +0.8
593,548 + Psest_0539 0.26 -0.3
593,549 - Psest_0539 0.26 +1.0
593,549 - Psest_0539 0.26 +1.1
593,549 - Psest_0539 0.26 +1.2
593,549 - Psest_0539 0.26 +1.3
593,623 + Psest_0539 0.30 -0.6
593,765 - Psest_0539 0.39 +0.8
593,765 - Psest_0539 0.39 +1.1
593,899 + Psest_0539 0.47 -0.2
593,899 + Psest_0539 0.47 -0.4
593,899 + Psest_0539 0.47 +2.1
593,899 + Psest_0539 0.47 +0.3
593,899 + Psest_0539 0.47 -1.2
593,899 + Psest_0539 0.47 -0.6
593,899 + Psest_0539 0.47 -0.9
593,899 + Psest_0539 0.47 +2.7
593,899 + Psest_0539 0.47 -0.1
593,899 + Psest_0539 0.47 -0.1
593,899 + Psest_0539 0.47 +2.7
593,899 + Psest_0539 0.47 -0.2
593,899 + Psest_0539 0.47 +0.6
593,899 + Psest_0539 0.47 -0.9
593,899 + Psest_0539 0.47 -1.2
593,899 + Psest_0539 0.47 +0.2
593,899 + Psest_0539 0.47 -0.7
593,899 + Psest_0539 0.47 -1.9
593,900 - Psest_0539 0.47 +1.6
593,900 - Psest_0539 0.47 +1.4
593,900 - Psest_0539 0.47 +0.2
593,900 - Psest_0539 0.47 +1.3
593,900 - Psest_0539 0.47 +1.4
593,900 - Psest_0539 0.47 +2.1
593,900 - Psest_0539 0.47 +1.2
593,900 - Psest_0539 0.47 +0.7
593,901 + Psest_0539 0.47 -0.6
594,289 + Psest_0539 0.70 -2.0
594,289 + Psest_0539 0.70 +1.4
594,290 - Psest_0539 0.71 +4.1
594,290 - Psest_0539 0.71 +1.4
594,290 - Psest_0539 0.71 +1.3
594,290 - Psest_0539 0.71 +0.1
594,356 - Psest_0539 0.75 -0.2
594,356 - Psest_0539 0.75 -0.2
594,816 + +0.1
595,033 + Psest_0540 0.28 -1.2
595,034 - Psest_0540 0.28 -2.0
595,108 + Psest_0540 0.37 -0.7
595,109 - Psest_0540 0.37 +1.4
595,109 - Psest_0540 0.37 -3.2
595,186 + Psest_0540 0.46 -1.0
595,186 + Psest_0540 0.46 +0.6
595,186 + Psest_0540 0.46 -0.4
595,186 + Psest_0540 0.46 +0.1
595,186 + Psest_0540 0.46 +0.1
595,186 + Psest_0540 0.46 +0.6
595,186 + Psest_0540 0.46 +0.1
595,187 - Psest_0540 0.47 -1.8
595,417 + Psest_0540 0.74 -1.2
595,417 + Psest_0540 0.74 -0.4
595,417 + Psest_0540 0.74 -0.4
595,417 + Psest_0540 0.74 +0.1
595,417 + Psest_0540 0.74 +0.3
595,417 + Psest_0540 0.74 -0.9
595,418 - Psest_0540 0.74 +0.6
595,418 - Psest_0540 0.74 +0.4
595,418 - Psest_0540 0.74 +0.6
595,418 - Psest_0540 0.74 -0.4
595,418 - Psest_0540 0.74 +1.1
595,418 - Psest_0540 0.74 +2.3
595,418 - Psest_0540 0.74 +0.7
595,418 - Psest_0540 0.74 -0.1
595,418 - Psest_0540 0.74 +1.1
595,418 - Psest_0540 0.74 -0.4
595,418 - Psest_0540 0.74 +1.6
595,644 + +0.1
595,644 + +1.1
595,644 + +0.4
595,644 + +0.1
595,644 + +3.1
595,645 - +1.3
595,697 + -0.7
595,720 - -0.2

Or see this region's nucleotide sequence