Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0496 and Psest_0497 are separated by 9 nucleotides Psest_0497 and Psest_0498 are separated by 9 nucleotides
Psest_0496: Psest_0496 - flagellar motor stator protein MotA, at 551,076 to 551,927
_0496
Psest_0497: Psest_0497 - Flagellar motor protein, at 551,937 to 552,917
_0497
Psest_0498: Psest_0498 - ribosome small subunit-dependent GTPase A, at 552,927 to 553,958
_0498
Position (kb) 551
552
553 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 551.069 kb on + strand at 551.069 kb on + strand at 551.070 kb on - strand at 551.070 kb on - strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.075 kb on + strand at 551.076 kb on - strand at 551.293 kb on - strand, within Psest_0496 at 551.293 kb on - strand, within Psest_0496 at 551.293 kb on - strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.295 kb on + strand, within Psest_0496 at 551.320 kb on - strand, within Psest_0496 at 551.409 kb on + strand, within Psest_0496 at 551.409 kb on + strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.410 kb on - strand, within Psest_0496 at 551.457 kb on + strand, within Psest_0496 at 551.457 kb on + strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.458 kb on - strand, within Psest_0496 at 551.673 kb on + strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.725 kb on - strand, within Psest_0496 at 551.925 kb on + strand at 551.926 kb on - strand at 552.101 kb on + strand, within Psest_0497 at 552.101 kb on + strand, within Psest_0497 at 552.102 kb on - strand, within Psest_0497 at 552.112 kb on - strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.459 kb on + strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.460 kb on - strand, within Psest_0497 at 552.491 kb on + strand, within Psest_0497 at 552.492 kb on - strand, within Psest_0497 at 552.722 kb on + strand, within Psest_0497 at 552.826 kb on + strand at 552.838 kb on + strand at 552.931 kb on + strand at 552.932 kb on - strand at 552.932 kb on - strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.977 kb on + strand at 552.978 kb on - strand at 552.978 kb on - strand at 552.978 kb on - strand at 553.209 kb on - strand, within Psest_0498 at 553.396 kb on + strand, within Psest_0498 at 553.411 kb on + strand, within Psest_0498
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 551,069 + -0.7 551,069 + -0.5 551,070 - +1.3 551,070 - +1.8 551,075 + -0.9 551,075 + -0.4 551,075 + +0.0 551,075 + +1.8 551,076 - +1.8 551,293 - Psest_0496 0.25 +1.1 551,293 - Psest_0496 0.25 +1.7 551,293 - Psest_0496 0.25 +0.6 551,295 + Psest_0496 0.26 +2.4 551,295 + Psest_0496 0.26 +2.7 551,295 + Psest_0496 0.26 +2.6 551,320 - Psest_0496 0.29 +1.5 551,409 + Psest_0496 0.39 +2.2 551,409 + Psest_0496 0.39 +1.1 551,410 - Psest_0496 0.39 +1.4 551,410 - Psest_0496 0.39 +1.6 551,410 - Psest_0496 0.39 +2.8 551,457 + Psest_0496 0.45 +3.1 551,457 + Psest_0496 0.45 +3.1 551,458 - Psest_0496 0.45 +2.6 551,458 - Psest_0496 0.45 +2.2 551,458 - Psest_0496 0.45 +2.7 551,673 + Psest_0496 0.70 +1.9 551,725 - Psest_0496 0.76 +2.1 551,725 - Psest_0496 0.76 +2.2 551,725 - Psest_0496 0.76 +1.7 551,925 + -2.8 551,926 - +2.1 552,101 + Psest_0497 0.17 +2.0 552,101 + Psest_0497 0.17 +2.1 552,102 - Psest_0497 0.17 +1.8 552,112 - Psest_0497 0.18 +2.5 552,459 + Psest_0497 0.53 +1.5 552,459 + Psest_0497 0.53 +2.7 552,460 - Psest_0497 0.53 +2.4 552,460 - Psest_0497 0.53 +2.9 552,460 - Psest_0497 0.53 +2.8 552,460 - Psest_0497 0.53 +3.0 552,491 + Psest_0497 0.56 +3.0 552,492 - Psest_0497 0.57 +2.7 552,722 + Psest_0497 0.80 +2.6 552,826 + +0.0 552,838 + -0.2 552,931 + +0.1 552,932 - -0.4 552,932 - -1.1 552,977 + -4.5 552,977 + -3.0 552,977 + -3.3 552,977 + -3.3 552,977 + -2.0 552,978 - -2.4 552,978 - -4.9 552,978 - -2.2 553,209 - Psest_0498 0.27 -2.6 553,396 + Psest_0498 0.45 -0.9 553,411 + Psest_0498 0.47 -4.5
Or see this region's nucleotide sequence