Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0045

Experiment: Gentamicin 0.0016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.0016 mg/ml
47,002	+		Psest_0043	0.85	+1.9
47,003	-		Psest_0043	0.85	-0.9
47,003	-		Psest_0043	0.85	-0.9
47,004	+		Psest_0043	0.86	+0.5
47,004	+		Psest_0043	0.86	-0.6
47,004	+		Psest_0043	0.86	+2.6
47,004	+		Psest_0043	0.86	-0.5
47,004	+		Psest_0043	0.86	+1.3
47,004	+		Psest_0043	0.86	-2.8
47,004	+		Psest_0043	0.86	+0.1
47,004	+		Psest_0043	0.86	-1.9
47,004	+		Psest_0043	0.86	-0.1
47,004	+		Psest_0043	0.86	-0.1
47,004	+		Psest_0043	0.86	-0.5
47,004	+		Psest_0043	0.86	-0.1
47,004	+		Psest_0043	0.86	-1.1
47,004	+		Psest_0043	0.86	-1.0
47,004	+		Psest_0043	0.86	-1.9
47,005	-		Psest_0043	0.86	+0.2
47,005	-		Psest_0043	0.86	+0.4
47,005	-		Psest_0043	0.86	+1.9
47,005	-		Psest_0043	0.86	+0.9
47,005	-		Psest_0043	0.86	+0.7
47,005	-		Psest_0043	0.86	+0.9
47,005	-		Psest_0043	0.86	+0.9
47,005	-		Psest_0043	0.86	-0.6
47,005	-		Psest_0043	0.86	-0.1
47,005	-		Psest_0043	0.86	-0.5
47,005	-		Psest_0043	0.86	-0.3
47,005	-		Psest_0043	0.86	-0.9
47,005	-		Psest_0043	0.86	+0.9
47,005	-		Psest_0043	0.86	+0.9
47,033	+				+0.2
47,034	-				+1.1
47,084	-				-1.1
47,084	-				+0.9
47,092	+				+0.5
47,092	+				-0.3
47,092	+				+0.9
47,092	+				-0.1
47,092	+				-0.7
47,092	+				-1.1
47,092	+				-0.7
47,093	-				+0.1
47,093	-				+1.3
47,093	-				+2.4
47,093	-				-0.7
47,093	-				-0.7
47,093	-				-0.7
47,093	-				+0.3
47,093	-				+0.0
47,093	-				+0.9
47,093	-				-0.7
47,093	-				-0.7
47,093	-				+0.7
47,093	-				-0.3
47,093	-				-0.1
47,093	-				+1.6
47,093	-				-0.1
47,093	-				+0.3
47,093	-				+1.9
47,093	-				+0.5
47,093	-				+0.2
47,093	-				+0.9
47,111	+				-0.9
47,111	+				+0.3
47,112	-				+0.1
47,112	-				+1.0
47,112	-				+0.1
47,303	+				+0.3
47,303	+				+0.4
47,304	-				-0.6
47,304	-				+0.3
47,304	-				-1.7
47,304	-				-0.1
47,404	+				+0.9
47,405	-		Psest_0044	0.35	-0.1
47,405	-		Psest_0044	0.35	-1.1
47,405	-		Psest_0044	0.35	-0.4
47,405	-		Psest_0044	0.35	+1.6
47,405	-		Psest_0044	0.35	-0.1
47,405	-		Psest_0044	0.35	-0.1
47,405	-		Psest_0044	0.35	+1.3
47,405	-		Psest_0044	0.35	+1.3
47,405	-		Psest_0044	0.35	-1.1
47,534	-		Psest_0044	0.82	-0.1
47,534	-		Psest_0044	0.82	+0.6
47,534	-		Psest_0044	0.82	-1.1
47,534	-		Psest_0044	0.82	+0.8
47,534	-		Psest_0044	0.82	+1.9
47,534	-		Psest_0044	0.82	+0.5
47,534	-		Psest_0044	0.82	+1.2
47,534	-		Psest_0044	0.82	-1.9
47,534	-		Psest_0044	0.82	+1.5
47,534	-		Psest_0044	0.82	-1.9
47,534	-		Psest_0044	0.82	+0.2
47,534	-		Psest_0044	0.82	+1.9
47,542	-		Psest_0044	0.85	-2.5
47,727	-				-0.5
47,758	+				-2.1
47,759	-				-2.5
47,792	+				-2.1
47,792	+				-1.9
47,916	+				-0.5
47,916	+				-0.3
47,917	-				-0.6
47,917	-				+0.9
47,917	-				+0.4
47,917	-				-2.0
48,030	-				-0.4
48,046	-		Psest_0045	0.13	+0.1
48,046	-		Psest_0045	0.13	-1.1
48,046	-		Psest_0045	0.13	-2.0
48,051	-		Psest_0045	0.14	+1.9
48,056	+		Psest_0045	0.15	-2.3
48,078	-		Psest_0045	0.21	-0.5
48,112	+		Psest_0045	0.30	-1.5
48,113	-		Psest_0045	0.30	-2.1
48,114	+		Psest_0045	0.31	-0.7
48,115	-		Psest_0045	0.31	-0.2
48,116	+		Psest_0045	0.31	-1.1
48,207	-		Psest_0045	0.55	-0.6
48,281	-		Psest_0045	0.75	-0.5
48,295	+		Psest_0045	0.79	+0.1
48,335	-		Psest_0045	0.89	+0.5
48,341	-				+2.4
48,341	-				-0.1
48,354	-				+0.0
48,451	-				+0.9
48,473	-				+0.5
48,480	+				+1.3
48,480	+				+0.3
48,481	-				-0.1
48,494	+				+1.3
48,494	+				+0.1
48,494	+				-0.7
48,494	+				+1.2
48,494	+				+1.9
48,494	+				+0.1
48,495	-				+0.3
48,495	-				+0.3
48,495	-				-0.1
48,495	-				+1.1
48,495	-				-1.7
48,495	-				-1.1
48,495	-				-1.5
48,495	-				+0.3
48,500	+				+0.1
48,500	+				+0.3
48,500	+				+0.9
48,501	-				-1.6
48,512	-				-0.1
48,533	-				+0.7
48,582	-				-0.1
48,735	+		Psest_0046	0.39	-0.1
48,736	-		Psest_0046	0.39	-0.7
48,736	-		Psest_0046	0.39	-0.5
48,795	-		Psest_0046	0.52	+0.9
48,864	+		Psest_0046	0.67	-0.1
48,865	-		Psest_0046	0.68	-0.4
48,894	+		Psest_0046	0.74	-0.3
48,894	+		Psest_0046	0.74	-0.1
48,894	+		Psest_0046	0.74	+1.9
48,894	+		Psest_0046	0.74	+0.3
48,894	+		Psest_0046	0.74	-0.6
48,894	+		Psest_0046	0.74	-1.3
48,894	+		Psest_0046	0.74	-0.2
48,895	-		Psest_0046	0.74	-1.7
48,895	-		Psest_0046	0.74	+0.4
48,895	-		Psest_0046	0.74	+0.9
48,895	-		Psest_0046	0.74	-0.7
48,895	-		Psest_0046	0.74	+1.9
48,895	-		Psest_0046	0.74	-0.6
48,895	-		Psest_0046	0.74	-0.6
48,915	+		Psest_0046	0.78	+0.4
48,960	+		Psest_0046	0.88	-0.1
48,960	+		Psest_0046	0.88	+0.4
48,960	+		Psest_0046	0.88	+0.9
48,961	-		Psest_0046	0.88	+0.9
48,971	+				+0.3
48,971	+				+0.9
48,971	+				+1.9
48,971	+				-1.1
48,971	+				+0.4
48,971	+				+0.9
48,971	+				-0.1
48,972	-				+1.5
48,972	-				+0.2
48,972	-				-1.1
48,981	+				-0.1
48,982	-				+0.4
48,982	-				-0.3
48,982	-				-0.7
49,080	+				+0.8
49,080	+				+0.4
49,229	-				+0.1
49,229	-				-0.0
49,246	+				+1.4
49,247	-				+0.9
49,247	-				-0.4
49,285	+				+0.7
49,286	-				+1.2
49,293	+				+0.3
49,293	+				-0.7
49,294	-				+1.1
49,294	-				-0.5