Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4393

Experiment: Gentamicin 0.0016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.0016 mg/ml
10,963	-				-0.2
10,965	+				+0.6
10,993	+				-3.2
11,012	+				-1.1
11,021	+				+0.7
11,021	+				+0.6
11,021	+				-1.2
11,021	+				+0.0
11,021	+				-0.1
11,021	+				-1.0
11,021	+				+0.3
11,021	+				-0.8
11,021	+				-1.0
11,021	+				+0.5
11,021	+				+1.1
11,021	+				+1.2
11,021	+				-0.5
11,021	+				+0.8
11,021	+				+0.5
11,021	+				+0.9
11,021	+				+0.1
11,022	-				-2.5
11,022	-				-2.1
11,022	-				-1.1
11,022	-				-1.8
11,022	-				-0.8
11,022	-				-3.8
11,022	-				+0.3
11,022	-				+0.3
11,022	-				-2.0
11,022	-				+0.7
11,043	+				-3.8
11,044	-				-1.7
11,055	-				+0.3
11,144	-		Psest_4391	0.24	+2.1
11,162	+		Psest_4391	0.27	-1.1
11,162	+		Psest_4391	0.27	+1.1
11,163	-		Psest_4391	0.27	-1.4
11,163	-		Psest_4391	0.27	-4.4
11,163	-		Psest_4391	0.27	+0.3
11,163	-		Psest_4391	0.27	-1.2
11,224	+		Psest_4391	0.38	+1.0
11,224	+		Psest_4391	0.38	+0.4
11,226	+		Psest_4391	0.38	+0.4
11,226	+		Psest_4391	0.38	-1.1
11,226	+		Psest_4391	0.38	+0.6
11,226	+		Psest_4391	0.38	+0.5
11,226	+		Psest_4391	0.38	+1.3
11,226	+		Psest_4391	0.38	+1.7
11,226	+		Psest_4391	0.38	+1.1
11,226	+		Psest_4391	0.38	+1.1
11,226	+		Psest_4391	0.38	+2.2
11,226	+		Psest_4391	0.38	+0.6
11,226	+		Psest_4391	0.38	-1.1
11,226	+		Psest_4391	0.38	+2.1
11,226	+		Psest_4391	0.38	+0.7
11,226	+		Psest_4391	0.38	+0.6
11,226	+		Psest_4391	0.38	-0.1
11,226	+		Psest_4391	0.38	+1.5
11,226	+		Psest_4391	0.38	-0.3
11,226	+		Psest_4391	0.38	+1.2
11,226	+		Psest_4391	0.38	+1.0
11,226	+		Psest_4391	0.38	+0.5
11,226	+		Psest_4391	0.38	+0.3
11,226	+		Psest_4391	0.38	+0.1
11,226	+		Psest_4391	0.38	+0.7
11,226	+		Psest_4391	0.38	-0.8
11,226	+		Psest_4391	0.38	+0.9
11,227	-		Psest_4391	0.38	-4.8
11,227	-		Psest_4391	0.38	-1.4
11,227	-		Psest_4391	0.38	-3.7
11,227	-		Psest_4391	0.38	+0.8
11,227	-		Psest_4391	0.38	-1.5
11,227	-				+0.3
11,227	-		Psest_4391	0.38	-2.0
11,227	-		Psest_4391	0.38	-2.1
11,227	-		Psest_4391	0.38	-1.2
11,227	-		Psest_4391	0.38	-2.0
11,227	-		Psest_4391	0.38	-1.8
11,227	-		Psest_4391	0.38	-2.5
11,227	-		Psest_4391	0.38	-2.5
11,227	-		Psest_4391	0.38	-0.1
11,227	-		Psest_4391	0.38	-2.5
11,230	+		Psest_4391	0.39	+1.7
11,230	+		Psest_4391	0.39	-0.6
11,230	+		Psest_4391	0.39	+0.1
11,230	+		Psest_4391	0.39	+0.6
11,230	+		Psest_4391	0.39	+0.6
11,230	+		Psest_4391	0.39	-0.1
11,230	+		Psest_4391	0.39	+2.3
11,230	+		Psest_4391	0.39	+0.5
11,230	+		Psest_4391	0.39	-2.6
11,230	+		Psest_4391	0.39	-3.1
11,230	+		Psest_4391	0.39	-2.0
11,230	+		Psest_4391	0.39	-0.2
11,230	+		Psest_4391	0.39	-1.8
11,230	+		Psest_4391	0.39	+0.6
11,230	+		Psest_4391	0.39	+0.1
11,230	+		Psest_4391	0.39	-1.1
11,230	+		Psest_4391	0.39	+0.9
11,230	+		Psest_4391	0.39	+0.4
11,230	+		Psest_4391	0.39	+1.9
11,230	+		Psest_4391	0.39	+0.8
11,230	+		Psest_4391	0.39	+0.1
11,230	+		Psest_4391	0.39	-0.1
11,230	+		Psest_4391	0.39	+1.2
11,230	+		Psest_4391	0.39	+0.9
11,230	+		Psest_4391	0.39	-0.4
11,230	+		Psest_4391	0.39	+0.9
11,230	+		Psest_4391	0.39	+0.3
11,230	+		Psest_4391	0.39	+0.3
11,230	+		Psest_4391	0.39	+1.7
11,230	+		Psest_4391	0.39	+1.1
11,230	+		Psest_4391	0.39	-3.1
11,230	+		Psest_4391	0.39	+0.4
11,230	+		Psest_4391	0.39	+0.2
11,230	+		Psest_4391	0.39	-2.5
11,230	+		Psest_4391	0.39	+0.3
11,230	+		Psest_4391	0.39	-1.1
11,231	-		Psest_4391	0.39	-3.4
11,231	-		Psest_4391	0.39	-3.8
11,231	-		Psest_4391	0.39	-2.1
11,231	-		Psest_4391	0.39	+0.6
11,231	-		Psest_4391	0.39	-1.7
11,231	-		Psest_4391	0.39	+0.7
11,231	-		Psest_4391	0.39	-2.2
11,231	-		Psest_4391	0.39	-1.4
11,231	-		Psest_4391	0.39	-2.0
11,231	-		Psest_4391	0.39	-1.7
11,231	-		Psest_4391	0.39	-3.6
11,231	-		Psest_4391	0.39	-2.7
11,231	-		Psest_4391	0.39	-2.0
11,231	-		Psest_4391	0.39	-2.2
11,231	-		Psest_4391	0.39	-2.4
11,231	-		Psest_4391	0.39	-1.9
11,231	-		Psest_4391	0.39	+1.2
11,231	-		Psest_4391	0.39	-4.0
11,231	-		Psest_4391	0.39	-1.1
11,231	-		Psest_4391	0.39	-1.3
11,231	-		Psest_4391	0.39	-2.7
11,231	-		Psest_4391	0.39	-2.0
11,231	-		Psest_4391	0.39	-4.3
11,231	-		Psest_4391	0.39	-1.7
11,231	-		Psest_4391	0.39	-1.7
11,231	-		Psest_4391	0.39	-0.7
11,231	-		Psest_4391	0.39	+0.8
11,231	-		Psest_4391	0.39	-1.1
11,231	-		Psest_4391	0.39	-1.1
11,258	+		Psest_4391	0.43	-0.3
11,259	-		Psest_4391	0.43	-0.9
11,421	+		Psest_4391	0.71	+1.9
11,421	+		Psest_4391	0.71	+1.4
11,421	+		Psest_4391	0.71	-2.0
11,422	-		Psest_4391	0.71	-1.5
11,422	-		Psest_4391	0.71	-2.7
11,462	-		Psest_4391	0.78	-1.0
11,499	+		Psest_4391	0.84	+0.5
11,500	-		Psest_4391	0.84	-3.5
11,500	-		Psest_4391	0.84	-2.0
11,500	-		Psest_4391	0.84	+0.3
11,506	+		Psest_4391	0.85	+0.3
11,506	+		Psest_4391	0.85	-0.0
11,506	+		Psest_4391	0.85	+0.2
11,507	-		Psest_4391	0.85	-1.4
11,577	+				-2.2
11,822	-				-3.5
11,835	+				-0.9
11,835	+				-0.8
11,836	-				+1.2
11,836	-				-0.3
11,844	-				-3.9
11,853	+				-1.7
11,854	-				-3.1
11,854	-				-0.1
11,854	-				-0.5
11,854	-				-3.0
11,854	-				-2.7
11,854	-				-1.7
11,854	-				-1.5
11,854	-				+0.2
11,877	+				-0.1
11,877	+				-2.2
11,877	+				-1.4
11,877	+				-1.1
11,877	+				-2.7
11,878	-				+0.3
11,878	-				-1.0
11,880	+				+0.7
11,880	+				-0.0
11,881	-				+0.1
11,881	-				+0.1
12,310	-		Psest_4393	0.50	-1.2
12,310	-		Psest_4393	0.50	-1.4
12,403	-		Psest_4393	0.60	+0.6
12,403	-		Psest_4393	0.60	+0.5
12,406	+		Psest_4393	0.61	-3.2
12,406	+		Psest_4393	0.61	-3.1
12,406	+		Psest_4393	0.61	-3.1
12,406	+		Psest_4393	0.61	-1.2
12,406	+		Psest_4393	0.61	-1.5
12,406	+		Psest_4393	0.61	-2.8
12,406	+		Psest_4393	0.61	-3.6
12,406	+		Psest_4393	0.61	-3.7
12,407	-		Psest_4393	0.61	+0.3
12,407	-		Psest_4393	0.61	-2.0
12,407	-		Psest_4393	0.61	-0.4
12,407	-		Psest_4393	0.61	-0.9
12,407	-		Psest_4393	0.61	-0.3
12,407	-		Psest_4393	0.61	-2.2
12,407	-		Psest_4393	0.61	-0.1
12,407	-		Psest_4393	0.61	-2.2
12,407	-		Psest_4393	0.61	-1.2
12,407	-		Psest_4393	0.61	-0.3
12,407	-		Psest_4393	0.61	-0.0
12,407	-		Psest_4393	0.61	-1.7
12,407	-		Psest_4393	0.61	-0.9
12,407	-		Psest_4393	0.61	-0.5
12,407	-		Psest_4393	0.61	-0.6
12,407	-		Psest_4393	0.61	-0.7
12,407	-		Psest_4393	0.61	-3.7
12,407	-		Psest_4393	0.61	-2.8
12,407	-		Psest_4393	0.61	-0.5
12,407	-		Psest_4393	0.61	-3.0
12,639	+		Psest_4393	0.87	-1.2
12,658	+		Psest_4393	0.89	-1.7
12,658	+		Psest_4393	0.89	-2.8
12,658	+		Psest_4393	0.89	-2.8
12,743	-				-1.2
12,746	-				-1.7
12,746	-				-1.0
12,746	-				-1.0
12,746	-				-2.2
12,746	-				-0.6
12,746	-				-0.3
12,746	-				-0.2
12,746	-				+0.8
12,746	-				-0.8
12,746	-				-0.7
12,746	-				+1.0
12,746	-				-1.0
12,746	-				-1.2
12,746	-				-0.2
12,746	-				-0.7
12,746	-				-0.1
12,746	-				+0.8
12,746	-				-0.8
12,746	-				-0.2
12,746	-				+0.8
12,746	-				-2.8
12,746	-				-2.9
12,746	-				-2.5
12,746	-				+0.2
12,746	-				-1.8
12,746	-				-0.3
12,746	-				+0.3