Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3993

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3990 and Psest_3991 overlap by 4 nucleotidesPsest_3991 and Psest_3992 are separated by 101 nucleotidesPsest_3992 and Psest_3993 overlap by 4 nucleotidesPsest_3993 and Psest_3994 are separated by 21 nucleotides Psest_3990: Psest_3990 - PAP2 superfamily., at 4,160,164 to 4,160,955 _3990 Psest_3991: Psest_3991 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 4,160,952 to 4,161,350 _3991 Psest_3992: Psest_3992 - Uncharacterized protein conserved in archaea, at 4,161,452 to 4,161,919 _3992 Psest_3993: Psest_3993 - alpha-L-glutamate ligases, RimK family, at 4,161,916 to 4,162,821 _3993 Psest_3994: Psest_3994 - Signal transduction histidine kinase, at 4,162,843 to 4,164,174 _3994 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4160.918 kb on + strandat 4160.918 kb on + strandat 4160.918 kb on + strandat 4160.953 kb on + strandat 4161.097 kb on + strand, within Psest_3991at 4161.097 kb on + strand, within Psest_3991at 4161.097 kb on + strand, within Psest_3991at 4161.098 kb on - strand, within Psest_3991at 4161.361 kb on + strandat 4161.361 kb on + strandat 4161.361 kb on + strandat 4161.362 kb on - strandat 4161.362 kb on - strandat 4161.362 kb on - strandat 4161.368 kb on + strandat 4161.368 kb on + strandat 4161.368 kb on + strandat 4161.368 kb on + strandat 4161.369 kb on - strandat 4161.369 kb on - strandat 4161.380 kb on + strandat 4161.381 kb on - strandat 4161.381 kb on - strandat 4161.381 kb on - strandat 4161.388 kb on + strandat 4161.389 kb on - strandat 4161.389 kb on - strandat 4161.389 kb on - strandat 4161.389 kb on - strandat 4161.389 kb on - strandat 4161.389 kb on - strandat 4161.420 kb on + strandat 4161.421 kb on - strandat 4161.421 kb on - strandat 4161.421 kb on - strandat 4161.421 kb on - strandat 4161.556 kb on + strand, within Psest_3992at 4161.556 kb on + strand, within Psest_3992at 4161.725 kb on + strand, within Psest_3992at 4161.726 kb on - strand, within Psest_3992at 4161.726 kb on - strand, within Psest_3992at 4161.726 kb on - strand, within Psest_3992at 4161.726 kb on - strand, within Psest_3992at 4161.726 kb on - strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.872 kb on + strand, within Psest_3992at 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.873 kb on - strandat 4161.874 kb on + strandat 4161.952 kb on + strandat 4161.952 kb on + strandat 4161.953 kb on - strandat 4161.953 kb on - strandat 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.027 kb on + strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.028 kb on - strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.129 kb on + strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.130 kb on - strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.450 kb on + strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4162.451 kb on - strand, within Psest_3993at 4163.108 kb on + strand, within Psest_3994at 4163.108 kb on + strand, within Psest_3994at 4163.109 kb on - strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.135 kb on + strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.136 kb on - strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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4,160,918 + -0.2
4,160,918 + +1.1
4,160,918 + +0.7
4,160,953 + +0.4
4,161,097 + Psest_3991 0.36 +2.5
4,161,097 + Psest_3991 0.36 -0.7
4,161,097 + Psest_3991 0.36 -0.7
4,161,098 - Psest_3991 0.37 -2.8
4,161,361 + -0.2
4,161,361 + -0.7
4,161,361 + +1.3
4,161,362 - -0.1
4,161,362 - +1.1
4,161,362 - +0.9
4,161,368 + -0.3
4,161,368 + +0.3
4,161,368 + -0.8
4,161,368 + -0.4
4,161,369 - +0.4
4,161,369 - -2.3
4,161,380 + -1.9
4,161,381 - -1.1
4,161,381 - +0.4
4,161,381 - -0.1
4,161,388 + -0.3
4,161,389 - -0.6
4,161,389 - +0.4
4,161,389 - +1.1
4,161,389 - -0.4
4,161,389 - -0.1
4,161,389 - +0.2
4,161,420 + +0.3
4,161,421 - +0.7
4,161,421 - +0.7
4,161,421 - +0.4
4,161,421 - +0.9
4,161,556 + Psest_3992 0.22 +0.2
4,161,556 + Psest_3992 0.22 -1.1
4,161,725 + Psest_3992 0.58 -0.1
4,161,726 - Psest_3992 0.59 +0.4
4,161,726 - Psest_3992 0.59 +0.8
4,161,726 - Psest_3992 0.59 +0.2
4,161,726 - Psest_3992 0.59 -0.2
4,161,726 - Psest_3992 0.59 +0.5
4,161,872 + Psest_3992 0.90 +0.6
4,161,872 + Psest_3992 0.90 -0.1
4,161,872 + Psest_3992 0.90 +0.2
4,161,872 + Psest_3992 0.90 +0.9
4,161,872 + Psest_3992 0.90 -0.1
4,161,872 + Psest_3992 0.90 +0.9
4,161,872 + Psest_3992 0.90 +0.5
4,161,872 + Psest_3992 0.90 +0.2
4,161,872 + Psest_3992 0.90 +0.3
4,161,872 + Psest_3992 0.90 -0.1
4,161,872 + Psest_3992 0.90 +2.9
4,161,872 + Psest_3992 0.90 +1.9
4,161,872 + Psest_3992 0.90 -1.4
4,161,872 + Psest_3992 0.90 +0.7
4,161,872 + Psest_3992 0.90 -0.1
4,161,872 + Psest_3992 0.90 -0.8
4,161,873 - +0.5
4,161,873 - -0.8
4,161,873 - +0.9
4,161,873 - +0.2
4,161,873 - +1.2
4,161,873 - -1.3
4,161,873 - +0.4
4,161,873 - +0.2
4,161,873 - +1.5
4,161,873 - +0.3
4,161,873 - +0.9
4,161,873 - -1.9
4,161,873 - -0.8
4,161,873 - +0.3
4,161,873 - +1.2
4,161,873 - +0.4
4,161,873 - +1.4
4,161,873 - +0.1
4,161,873 - -0.1
4,161,873 - -0.6
4,161,873 - -1.7
4,161,873 - +1.3
4,161,873 - +0.3
4,161,873 - -0.8
4,161,873 - +0.1
4,161,873 - +1.2
4,161,873 - +0.9
4,161,873 - -0.2
4,161,873 - +2.6
4,161,873 - +1.5
4,161,873 - +1.7
4,161,873 - -0.7
4,161,873 - -0.3
4,161,873 - -0.4
4,161,874 + -0.9
4,161,952 + +0.3
4,161,952 + -1.1
4,161,953 - +0.7
4,161,953 - -0.5
4,162,027 + Psest_3993 0.12 +0.6
4,162,027 + Psest_3993 0.12 -0.1
4,162,027 + Psest_3993 0.12 +0.1
4,162,027 + Psest_3993 0.12 -1.4
4,162,028 - Psest_3993 0.12 +0.6
4,162,028 - Psest_3993 0.12 +0.1
4,162,028 - Psest_3993 0.12 -1.1
4,162,028 - Psest_3993 0.12 -0.4
4,162,129 + Psest_3993 0.24 -0.5
4,162,129 + Psest_3993 0.24 -0.9
4,162,129 + Psest_3993 0.24 +1.3
4,162,129 + Psest_3993 0.24 +1.2
4,162,129 + Psest_3993 0.24 +0.6
4,162,130 - Psest_3993 0.24 -0.3
4,162,130 - Psest_3993 0.24 +0.1
4,162,130 - Psest_3993 0.24 +1.5
4,162,130 - Psest_3993 0.24 +1.9
4,162,130 - Psest_3993 0.24 +0.2
4,162,130 - Psest_3993 0.24 +0.7
4,162,450 + Psest_3993 0.59 -0.1
4,162,450 + Psest_3993 0.59 +0.9
4,162,450 + Psest_3993 0.59 +1.4
4,162,450 + Psest_3993 0.59 -0.2
4,162,450 + Psest_3993 0.59 -0.7
4,162,450 + Psest_3993 0.59 +0.9
4,162,450 + Psest_3993 0.59 +0.8
4,162,451 - Psest_3993 0.59 -0.3
4,162,451 - Psest_3993 0.59 -0.1
4,162,451 - Psest_3993 0.59 +0.5
4,162,451 - Psest_3993 0.59 +0.3
4,162,451 - Psest_3993 0.59 -3.8
4,162,451 - Psest_3993 0.59 +0.7
4,162,451 - Psest_3993 0.59 +0.5
4,162,451 - Psest_3993 0.59 -0.7
4,162,451 - Psest_3993 0.59 +0.6
4,163,108 + Psest_3994 0.20 +0.9
4,163,108 + Psest_3994 0.20 -1.1
4,163,109 - Psest_3994 0.20 +1.2
4,163,135 + Psest_3994 0.22 +0.9
4,163,135 + Psest_3994 0.22 +0.6
4,163,135 + Psest_3994 0.22 +0.3
4,163,135 + Psest_3994 0.22 -1.9
4,163,135 + Psest_3994 0.22 -2.1
4,163,135 + Psest_3994 0.22 -0.7
4,163,135 + Psest_3994 0.22 -1.4
4,163,135 + Psest_3994 0.22 -0.7
4,163,135 + Psest_3994 0.22 -0.7
4,163,135 + Psest_3994 0.22 -0.5
4,163,135 + Psest_3994 0.22 -1.4
4,163,135 + Psest_3994 0.22 -1.9
4,163,136 - Psest_3994 0.22 -0.7
4,163,136 - Psest_3994 0.22 +0.8
4,163,136 - Psest_3994 0.22 -0.4
4,163,136 - Psest_3994 0.22 +0.5
4,163,136 - Psest_3994 0.22 -0.1
4,163,136 - Psest_3994 0.22 -1.1
4,163,136 - Psest_3994 0.22 -1.7
4,163,136 - Psest_3994 0.22 -0.3
4,163,136 - Psest_3994 0.22 +0.4
4,163,136 - Psest_3994 0.22 -0.4
4,163,136 - Psest_3994 0.22 -2.1
4,163,279 + Psest_3994 0.33 -1.1
4,163,279 + Psest_3994 0.33 +0.1
4,163,279 + Psest_3994 0.33 +0.9
4,163,279 + Psest_3994 0.33 +0.9
4,163,768 + Psest_3994 0.69 -0.1
4,163,768 + Psest_3994 0.69 -1.1
4,163,768 + Psest_3994 0.69 -0.3
4,163,769 - Psest_3994 0.70 +4.0
4,163,769 - Psest_3994 0.70 +3.4
4,163,769 - Psest_3994 0.70 +2.5
4,163,769 - Psest_3994 0.70 +2.9
4,163,769 - Psest_3994 0.70 +2.8
4,163,769 - Psest_3994 0.70 +2.6

Or see this region's nucleotide sequence