Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3912 and Psest_3913 are separated by 149 nucleotides Psest_3913 and Psest_3914 are separated by 307 nucleotides Psest_3914 and Psest_3915 are separated by 218 nucleotides Psest_3915 and Psest_3916 are separated by 108 nucleotides
Psest_3912: Psest_3912 - His Kinase A (phosphoacceptor) domain./HAMP domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 4,081,095 to 4,082,576
_3912
Psest_3913: Psest_3913 - hypothetical protein, at 4,082,726 to 4,083,118
_3913
Psest_3914: Psest_3914 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,083,426 to 4,084,319
_3914
Psest_3915: Psest_3915 - hypothetical protein, at 4,084,538 to 4,084,927
_3915
Psest_3916: Psest_3916 - hypothetical protein, at 4,085,036 to 4,085,710
_3916
Position (kb) 4083
4084
4085 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4082.538 kb on + strand at 4082.539 kb on - strand at 4082.565 kb on + strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.566 kb on - strand at 4082.578 kb on + strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.579 kb on - strand at 4082.587 kb on + strand at 4082.588 kb on - strand at 4082.656 kb on - strand at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.044 kb on + strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.045 kb on - strand, within Psest_3913 at 4083.341 kb on + strand at 4083.341 kb on + strand at 4083.342 kb on - strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.472 kb on + strand at 4083.473 kb on - strand at 4083.473 kb on - strand at 4083.473 kb on - strand at 4083.688 kb on + strand, within Psest_3914 at 4083.688 kb on + strand, within Psest_3914 at 4083.745 kb on + strand, within Psest_3914 at 4083.746 kb on - strand, within Psest_3914 at 4083.991 kb on + strand, within Psest_3914 at 4083.992 kb on - strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.029 kb on + strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.030 kb on - strand, within Psest_3914 at 4084.078 kb on + strand, within Psest_3914 at 4084.079 kb on - strand, within Psest_3914 at 4084.240 kb on + strand at 4084.302 kb on + strand at 4084.302 kb on + strand at 4084.313 kb on + strand at 4084.313 kb on + strand at 4084.313 kb on + strand at 4084.314 kb on - strand at 4084.398 kb on + strand at 4084.446 kb on + strand at 4084.447 kb on - strand at 4084.588 kb on + strand, within Psest_3915 at 4084.589 kb on - strand, within Psest_3915 at 4084.589 kb on - strand, within Psest_3915 at 4084.589 kb on - strand, within Psest_3915 at 4084.589 kb on - strand, within Psest_3915 at 4084.594 kb on + strand, within Psest_3915 at 4084.594 kb on + strand, within Psest_3915 at 4084.595 kb on - strand, within Psest_3915 at 4084.595 kb on - strand, within Psest_3915 at 4084.620 kb on + strand, within Psest_3915 at 4084.620 kb on + strand, within Psest_3915 at 4084.621 kb on - strand, within Psest_3915 at 4084.621 kb on - strand, within Psest_3915 at 4084.621 kb on - strand, within Psest_3915 at 4084.690 kb on + strand, within Psest_3915 at 4084.690 kb on + strand, within Psest_3915 at 4084.739 kb on + strand, within Psest_3915 at 4084.740 kb on - strand, within Psest_3915 at 4084.740 kb on - strand, within Psest_3915 at 4084.740 kb on - strand, within Psest_3915 at 4084.740 kb on - strand, within Psest_3915 at 4084.740 kb on - strand, within Psest_3915 at 4084.757 kb on - strand, within Psest_3915 at 4084.927 kb on + strand at 4084.927 kb on + strand at 4084.927 kb on + strand at 4084.928 kb on - strand at 4084.928 kb on - strand at 4084.928 kb on - strand at 4085.024 kb on + strand at 4085.089 kb on + strand at 4085.089 kb on + strand at 4085.090 kb on - strand at 4085.090 kb on - strand at 4085.090 kb on - strand at 4085.090 kb on - strand at 4085.090 kb on - strand at 4085.129 kb on - strand, within Psest_3916 at 4085.214 kb on + strand, within Psest_3916 at 4085.214 kb on + strand, within Psest_3916 at 4085.215 kb on - strand, within Psest_3916 at 4085.215 kb on - strand, within Psest_3916 at 4085.215 kb on - strand, within Psest_3916 at 4085.215 kb on - strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.220 kb on + strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.221 kb on - strand, within Psest_3916 at 4085.298 kb on + strand, within Psest_3916 at 4085.298 kb on + strand, within Psest_3916 at 4085.298 kb on + strand, within Psest_3916 at 4085.298 kb on + strand, within Psest_3916 at 4085.299 kb on - strand, within Psest_3916 at 4085.299 kb on - strand, within Psest_3916 at 4085.302 kb on + strand, within Psest_3916 at 4085.302 kb on + strand, within Psest_3916 at 4085.302 kb on + strand, within Psest_3916 at 4085.302 kb on + strand, within Psest_3916 at 4085.302 kb on + strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916 at 4085.303 kb on - strand, within Psest_3916
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 4,082,538 + -1.2 4,082,539 - +0.3 4,082,565 + -0.7 4,082,566 - -0.1 4,082,566 - +2.2 4,082,566 - +0.9 4,082,578 + -0.4 4,082,579 - +0.9 4,082,579 - -0.1 4,082,579 - -1.7 4,082,579 - +0.9 4,082,587 + -0.9 4,082,588 - -0.1 4,082,656 - +0.9 4,083,044 + Psest_3913 0.81 +0.9 4,083,044 + Psest_3913 0.81 +1.3 4,083,044 + Psest_3913 0.81 -0.8 4,083,045 - Psest_3913 0.81 -0.7 4,083,045 - Psest_3913 0.81 -0.1 4,083,045 - Psest_3913 0.81 -0.1 4,083,341 + -0.6 4,083,341 + -1.1 4,083,342 - -0.7 4,083,472 + -0.7 4,083,472 + +0.7 4,083,472 + +1.2 4,083,472 + +0.9 4,083,472 + +0.3 4,083,472 + +0.4 4,083,473 - +2.2 4,083,473 - +0.5 4,083,473 - +0.7 4,083,688 + Psest_3914 0.29 +1.4 4,083,688 + Psest_3914 0.29 -0.9 4,083,745 + Psest_3914 0.36 -0.4 4,083,746 - Psest_3914 0.36 +0.9 4,083,991 + Psest_3914 0.63 -0.7 4,083,992 - Psest_3914 0.63 +1.9 4,084,029 + Psest_3914 0.67 +0.1 4,084,029 + Psest_3914 0.67 -0.3 4,084,029 + Psest_3914 0.67 -2.0 4,084,030 - Psest_3914 0.68 +0.8 4,084,030 - Psest_3914 0.68 +0.6 4,084,030 - Psest_3914 0.68 -0.1 4,084,030 - Psest_3914 0.68 -0.2 4,084,030 - Psest_3914 0.68 +0.4 4,084,030 - Psest_3914 0.68 +0.6 4,084,030 - Psest_3914 0.68 +0.9 4,084,078 + Psest_3914 0.73 +0.2 4,084,079 - Psest_3914 0.73 -0.2 4,084,240 + -0.3 4,084,302 + -1.3 4,084,302 + -2.1 4,084,313 + -0.4 4,084,313 + +0.4 4,084,313 + +0.0 4,084,314 - +0.9 4,084,398 + +0.2 4,084,446 + +0.2 4,084,447 - +0.3 4,084,588 + Psest_3915 0.13 +0.2 4,084,589 - Psest_3915 0.13 +0.9 4,084,589 - Psest_3915 0.13 +2.6 4,084,589 - Psest_3915 0.13 +0.3 4,084,589 - Psest_3915 0.13 +0.4 4,084,594 + Psest_3915 0.14 -0.3 4,084,594 + Psest_3915 0.14 +0.0 4,084,595 - Psest_3915 0.15 +0.5 4,084,595 - Psest_3915 0.15 +1.2 4,084,620 + Psest_3915 0.21 -1.9 4,084,620 + Psest_3915 0.21 +0.9 4,084,621 - Psest_3915 0.21 -0.1 4,084,621 - Psest_3915 0.21 +0.3 4,084,621 - Psest_3915 0.21 +0.0 4,084,690 + Psest_3915 0.39 -0.3 4,084,690 + Psest_3915 0.39 -1.0 4,084,739 + Psest_3915 0.52 +0.3 4,084,740 - Psest_3915 0.52 +0.9 4,084,740 - Psest_3915 0.52 +1.9 4,084,740 - Psest_3915 0.52 -1.4 4,084,740 - Psest_3915 0.52 -1.1 4,084,740 - Psest_3915 0.52 +0.2 4,084,757 - Psest_3915 0.56 -0.0 4,084,927 + +0.8 4,084,927 + -1.4 4,084,927 + +1.6 4,084,928 - +0.7 4,084,928 - -0.6 4,084,928 - -1.4 4,085,024 + -1.8 4,085,089 + +0.2 4,085,089 + -1.5 4,085,090 - -0.6 4,085,090 - -0.1 4,085,090 - -0.9 4,085,090 - -0.9 4,085,090 - -1.3 4,085,129 - Psest_3916 0.14 +0.1 4,085,214 + Psest_3916 0.26 -3.0 4,085,214 + Psest_3916 0.26 -2.7 4,085,215 - Psest_3916 0.27 -2.1 4,085,215 - Psest_3916 0.27 -0.3 4,085,215 - Psest_3916 0.27 -1.6 4,085,215 - Psest_3916 0.27 -1.1 4,085,220 + Psest_3916 0.27 +1.9 4,085,220 + Psest_3916 0.27 -0.1 4,085,220 + Psest_3916 0.27 -2.5 4,085,220 + Psest_3916 0.27 -1.6 4,085,220 + Psest_3916 0.27 +0.1 4,085,220 + Psest_3916 0.27 -2.9 4,085,220 + Psest_3916 0.27 -1.7 4,085,220 + Psest_3916 0.27 -1.7 4,085,220 + Psest_3916 0.27 -2.9 4,085,220 + Psest_3916 0.27 +0.4 4,085,220 + Psest_3916 0.27 -0.4 4,085,220 + Psest_3916 0.27 -0.1 4,085,220 + Psest_3916 0.27 +1.5 4,085,220 + Psest_3916 0.27 -3.5 4,085,220 + Psest_3916 0.27 +0.5 4,085,220 + Psest_3916 0.27 -0.1 4,085,220 + Psest_3916 0.27 -0.1 4,085,220 + Psest_3916 0.27 -1.4 4,085,221 - Psest_3916 0.27 -1.4 4,085,221 - Psest_3916 0.27 -0.3 4,085,221 - Psest_3916 0.27 -1.4 4,085,221 - Psest_3916 0.27 -0.6 4,085,221 - Psest_3916 0.27 -2.4 4,085,221 - Psest_3916 0.27 -0.1 4,085,221 - Psest_3916 0.27 -0.2 4,085,221 - Psest_3916 0.27 +0.9 4,085,221 - Psest_3916 0.27 -0.5 4,085,221 - Psest_3916 0.27 -0.2 4,085,221 - Psest_3916 0.27 -1.1 4,085,221 - Psest_3916 0.27 +0.2 4,085,221 - Psest_3916 0.27 -0.9 4,085,221 - Psest_3916 0.27 -1.3 4,085,221 - Psest_3916 0.27 +0.3 4,085,298 + Psest_3916 0.39 -2.2 4,085,298 + Psest_3916 0.39 -0.4 4,085,298 + Psest_3916 0.39 -0.6 4,085,298 + Psest_3916 0.39 -0.3 4,085,299 - Psest_3916 0.39 -1.4 4,085,299 - Psest_3916 0.39 -0.8 4,085,302 + Psest_3916 0.39 +0.4 4,085,302 + Psest_3916 0.39 +1.7 4,085,302 + Psest_3916 0.39 -0.1 4,085,302 + Psest_3916 0.39 -1.7 4,085,302 + Psest_3916 0.39 -0.1 4,085,303 - Psest_3916 0.40 +0.9 4,085,303 - Psest_3916 0.40 +0.6 4,085,303 - Psest_3916 0.40 -0.7 4,085,303 - Psest_3916 0.40 +1.2 4,085,303 - Psest_3916 0.40 +0.1 4,085,303 - Psest_3916 0.40 -1.0 4,085,303 - Psest_3916 0.40 -1.4
Or see this region's nucleotide sequence