Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3642

Experiment: Gentamicin 0.0016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.0016 mg/ml
3,802,471	+				-2.6
3,802,471	+				+0.9
3,802,472	-				-0.4
3,802,472	-				-1.7
3,802,634	+		Psest_3641	0.15	+1.6
3,802,669	-		Psest_3641	0.18	-0.4
3,802,672	+		Psest_3641	0.19	-1.8
3,802,672	+		Psest_3641	0.19	+0.1
3,802,673	-		Psest_3641	0.19	-0.8
3,802,673	-		Psest_3641	0.19	+0.7
3,802,673	-		Psest_3641	0.19	-2.5
3,802,673	-		Psest_3641	0.19	-0.5
3,802,673	-		Psest_3641	0.19	-1.3
3,802,673	-		Psest_3641	0.19	-2.0
3,802,673	-		Psest_3641	0.19	-0.8
3,802,816	-		Psest_3641	0.34	-1.1
3,802,816	-		Psest_3641	0.34	-2.9
3,802,816	-		Psest_3641	0.34	+1.0
3,802,816	-		Psest_3641	0.34	-0.5
3,802,829	+		Psest_3641	0.35	-1.0
3,802,829	+		Psest_3641	0.35	-2.0
3,802,829	+		Psest_3641	0.35	-2.8
3,802,829	+		Psest_3641	0.35	-1.0
3,802,829	+		Psest_3641	0.35	-2.8
3,802,829	+		Psest_3641	0.35	-0.6
3,802,829	+		Psest_3641	0.35	-2.5
3,802,830	-		Psest_3641	0.35	-2.3
3,802,830	-		Psest_3641	0.35	-1.8
3,802,830	-		Psest_3641	0.35	-2.6
3,802,830	-		Psest_3641	0.35	-0.7
3,802,830	-		Psest_3641	0.35	+1.3
3,802,830	-		Psest_3641	0.35	-1.2
3,802,830	-		Psest_3641	0.35	-0.7
3,802,830	-		Psest_3641	0.35	-0.2
3,802,830	-		Psest_3641	0.35	-0.1
3,802,830	-		Psest_3641	0.35	-0.8
3,802,830	-		Psest_3641	0.35	-1.2
3,802,869	+		Psest_3641	0.39	-2.2
3,802,869	+		Psest_3641	0.39	-0.9
3,802,870	-		Psest_3641	0.39	-1.7
3,802,949	-		Psest_3641	0.48	-1.0
3,803,000	+		Psest_3641	0.53	-2.3
3,803,000	+		Psest_3641	0.53	-1.3
3,803,001	-		Psest_3641	0.53	+0.2
3,803,001	-		Psest_3641	0.53	-1.2
3,803,001	-		Psest_3641	0.53	-1.3
3,803,001	-		Psest_3641	0.53	-0.1
3,803,041	+		Psest_3641	0.57	-3.2
3,803,042	-		Psest_3641	0.57	-0.7
3,803,060	+		Psest_3641	0.59	-2.1
3,803,060	+		Psest_3641	0.59	-0.5
3,803,061	-		Psest_3641	0.59	-2.3
3,803,070	+		Psest_3641	0.60	-0.6
3,803,070	+		Psest_3641	0.60	-1.1
3,803,070	+		Psest_3641	0.60	-0.5
3,803,070	+		Psest_3641	0.60	-1.9
3,803,071	-		Psest_3641	0.61	-1.5
3,803,071	-		Psest_3641	0.61	-1.5
3,803,071	-		Psest_3641	0.61	-0.6
3,803,071	-		Psest_3641	0.61	-0.2
3,803,283	+		Psest_3641	0.83	-3.7
3,803,284	-		Psest_3641	0.83	-0.6
3,803,284	-		Psest_3641	0.83	-3.6
3,803,446	+				+0.1
3,803,610	+				-2.6
3,803,702	+		Psest_3642	0.16	-1.6
3,803,703	-		Psest_3642	0.16	-1.0
3,803,921	-		Psest_3642	0.31	-0.9
3,803,976	-		Psest_3642	0.35	+0.4
3,804,030	+		Psest_3642	0.38	+2.0
3,804,031	-		Psest_3642	0.38	-0.6
3,804,031	-		Psest_3642	0.38	-0.6
3,804,031	-		Psest_3642	0.38	-2.4
3,804,031	-		Psest_3642	0.38	-1.6
3,804,031	-		Psest_3642	0.38	-0.1
3,804,039	+		Psest_3642	0.39	+0.5
3,804,039	+		Psest_3642	0.39	-0.8
3,804,040	-		Psest_3642	0.39	-3.1
3,804,040	-		Psest_3642	0.39	-0.0
3,804,040	-		Psest_3642	0.39	+0.1
3,804,304	+		Psest_3642	0.57	+0.2
3,804,304	+		Psest_3642	0.57	-0.3
3,804,404	+		Psest_3642	0.63	-0.6
3,804,405	-		Psest_3642	0.64	-0.8
3,804,405	-		Psest_3642	0.64	+0.5
3,804,438	-		Psest_3642	0.66	-1.6
3,804,601	+		Psest_3642	0.77	-0.4
3,804,602	-		Psest_3642	0.77	+0.0
3,804,602	-		Psest_3642	0.77	-0.0
3,804,602	-		Psest_3642	0.77	-0.3
3,804,602	-		Psest_3642	0.77	+0.6
3,804,602	-		Psest_3642	0.77	-0.9
3,804,602	-		Psest_3642	0.77	-0.7
3,804,684	+		Psest_3642	0.82	-4.3
3,804,684	+		Psest_3642	0.82	-0.2
3,804,684	+		Psest_3642	0.82	-0.2
3,804,684	+		Psest_3642	0.82	-1.4
3,804,684	+		Psest_3642	0.82	-0.8
3,804,685	-		Psest_3642	0.82	+1.3
3,804,685	-		Psest_3642	0.82	-0.7
3,804,685	-		Psest_3642	0.82	-1.8
3,804,685	-		Psest_3642	0.82	-0.3
3,804,685	-		Psest_3642	0.82	-0.5
3,804,685	-		Psest_3642	0.82	-1.4
3,804,685	-		Psest_3642	0.82	+0.4
3,804,777	-		Psest_3642	0.89	-0.3
3,804,777	-		Psest_3642	0.89	-2.3
3,804,777	-		Psest_3642	0.89	+0.6
3,804,810	+				-2.1
3,804,810	+				-0.7
3,804,810	+				-0.3
3,804,810	+				-3.7
3,804,810	+				-0.9
3,804,810	+				-1.1
3,804,810	+				-1.1
3,804,810	+				-1.4
3,804,811	-				+0.3
3,804,811	-				-2.6
3,804,811	-				-0.8
3,804,811	-				-0.7
3,804,811	-				-1.4
3,804,811	-				-0.1
3,804,811	-				-0.4
3,804,811	-				+0.4
3,804,811	-				+0.4
3,804,811	-				-2.7
3,804,811	-				-0.5
3,804,811	-				-0.6
3,804,811	-				-0.9
3,804,811	-				-1.5
3,804,811	-				-0.0
3,804,811	-				-0.6
3,804,811	-				-0.2
3,804,929	+				-0.7
3,804,929	+				+0.4
3,804,929	+				-1.7
3,804,929	+				-2.9
3,804,929	+				+0.0
3,804,929	+				-0.7
3,804,929	+				+0.6
3,804,929	+				-1.6
3,804,929	+				-1.1
3,804,929	+				-0.1
3,804,929	+				-0.4
3,804,929	+				-1.0
3,804,929	+				-0.9
3,804,929	+				-0.6
3,804,929	+				-1.0
3,804,929	+				+0.3
3,804,929	+				-0.5
3,804,929	+				-1.7
3,804,929	+				-3.9
3,804,929	+				+0.1
3,804,929	+				-0.7
3,804,929	+				-0.1
3,804,929	+				-0.1
3,804,929	+				-0.8
3,804,929	+				-0.2
3,804,929	+				-0.8
3,804,929	+				-0.9
3,804,929	+				-1.9
3,804,929	+				-0.5
3,804,929	+				-2.4
3,804,929	+				-1.3
3,804,929	+				-1.2
3,804,929	+				-0.3
3,804,929	+				+1.4
3,804,929	+				-1.5
3,804,929	+				-3.3
3,804,930	-				-0.8
3,804,930	-				+0.4
3,804,930	-				-0.4
3,804,930	-				-0.0
3,804,930	-				-2.0
3,804,930	-				-3.1
3,804,930	-				-0.7
3,804,930	-				+0.5
3,804,930	-				-0.0
3,804,930	-				+1.3
3,804,930	-				-0.3
3,804,930	-				-1.2
3,804,930	-				+0.1
3,804,930	-				+1.2
3,804,930	-				-0.8
3,804,930	-				-1.3
3,804,930	-				+0.1
3,804,930	-				-1.2
3,804,930	-				+0.1
3,804,930	-				-0.3
3,804,930	-				+0.3
3,804,930	-				+2.0
3,804,930	-				-1.5
3,804,930	-				-3.7
3,804,930	-				+0.2
3,804,930	-				+0.6
3,804,930	-				-0.2
3,804,930	-				-0.4
3,804,930	-				-1.0
3,804,930	-				-0.1
3,804,930	-				-2.1
3,804,930	-				-0.8
3,804,930	-				-1.8
3,804,930	-				-1.4
3,804,930	-				-1.6
3,804,930	-				+0.2
3,804,930	-				-1.0
3,804,930	-				+0.7
3,804,930	-				-0.2
3,804,930	-				-0.6
3,804,930	-				-1.0
3,804,930	-				-0.9
3,804,930	-				-3.0
3,804,930	-				+1.0
3,804,930	-				-0.3
3,804,930	-				-1.1
3,804,930	-				-1.0
3,804,930	-				+0.1
3,804,930	-				-0.3
3,804,930	-				+0.1
3,804,930	-				+0.7
3,804,930	-				-0.6
3,804,930	-				+1.7
3,804,930	-				-0.3
3,804,930	-				-1.0
3,804,930	-				+0.5
3,804,930	-				-1.4
3,804,930	-				-0.3
3,804,930	-				-0.2
3,804,930	-				-2.4
3,804,930	-				-0.3
3,804,930	-				+0.9
3,804,931	+				-0.5
3,804,931	+				+0.9
3,804,932	-				-0.9
3,804,956	+				-2.4
3,804,984	+				-0.7
3,804,984	+				-1.6
3,804,984	+				-0.7
3,804,985	-				+0.3
3,804,985	-				-1.3
3,804,985	-				-0.5
3,804,985	-				-0.8
3,804,989	+				-0.1
3,804,989	+				-0.1
3,804,989	+				-0.5
3,804,989	+				-0.6
3,804,989	+				-0.0
3,804,989	+				-1.7
3,804,989	+				-2.1
3,804,989	+				+0.1
3,804,989	+				-2.4
3,804,989	+				-0.8
3,804,989	+				-1.4
3,804,990	-				+0.9
3,804,990	-				-0.3
3,804,990	-				-0.0
3,804,990	-				+1.6
3,804,990	-				-0.6
3,804,990	-				+0.7
3,804,990	-				-0.6
3,804,990	-				+0.2
3,804,990	-				-1.7
3,804,990	-				+1.6
3,804,990	-				+0.9
3,804,990	-				-0.7
3,804,990	-				-0.7
3,805,074	+		Psest_3643	0.16	-0.8
3,805,074	+		Psest_3643	0.16	+0.0
3,805,074	+		Psest_3643	0.16	-2.4
3,805,074	+		Psest_3643	0.16	-0.2
3,805,074	+		Psest_3643	0.16	-0.8
3,805,075	-		Psest_3643	0.16	+1.0
3,805,075	-		Psest_3643	0.16	-0.3
3,805,138	+		Psest_3643	0.35	-1.6
3,805,139	-		Psest_3643	0.35	-1.1
3,805,139	-		Psest_3643	0.35	+0.6
3,805,209	-		Psest_3643	0.55	-1.9
3,805,312	+		Psest_3643	0.85	+0.2
3,805,312	+		Psest_3643	0.85	-0.0
3,805,312	+		Psest_3643	0.85	+1.3
3,805,312	+		Psest_3643	0.85	-2.1
3,805,312	+		Psest_3643	0.85	+0.1
3,805,312	+		Psest_3643	0.85	-0.6
3,805,312	+		Psest_3643	0.85	+1.0
3,805,312	+		Psest_3643	0.85	+1.8
3,805,312	+		Psest_3643	0.85	+0.2
3,805,312	+		Psest_3643	0.85	-1.6
3,805,312	+		Psest_3643	0.85	-1.1
3,805,312	+		Psest_3643	0.85	-0.2
3,805,312	+		Psest_3643	0.85	-0.4
3,805,312	+		Psest_3643	0.85	-1.3
3,805,312	+		Psest_3643	0.85	-0.7
3,805,312	+		Psest_3643	0.85	+1.6
3,805,312	+		Psest_3643	0.85	+0.1
3,805,313	-		Psest_3643	0.86	-0.6
3,805,313	-		Psest_3643	0.86	-0.2
3,805,313	-		Psest_3643	0.86	+0.6
3,805,313	-		Psest_3643	0.86	-0.8
3,805,313	-		Psest_3643	0.86	-0.1
3,805,313	-		Psest_3643	0.86	-0.0
3,805,313	-		Psest_3643	0.86	-1.9
3,805,313	-		Psest_3643	0.86	-1.3
3,805,313	-		Psest_3643	0.86	-1.1
3,805,313	-		Psest_3643	0.86	-0.4
3,805,313	-		Psest_3643	0.86	-0.1
3,805,313	-		Psest_3643	0.86	-1.1
3,805,313	-		Psest_3643	0.86	+1.5
3,805,313	-		Psest_3643	0.86	+1.2
3,805,313	-		Psest_3643	0.86	-0.8
3,805,324	+		Psest_3643	0.89	-1.2
3,805,325	-		Psest_3643	0.89	+0.0
3,805,325	-		Psest_3643	0.89	-0.5
3,805,325	-		Psest_3643	0.89	-2.6
3,805,325	-		Psest_3643	0.89	-0.4
3,805,325	-		Psest_3643	0.89	+0.3
3,805,365	-				-0.3
3,805,405	+				-0.5
3,805,405	+				-0.1
3,805,405	+				-0.4
3,805,406	-				-1.8
3,805,406	-				-0.7
3,805,425	+				+0.5
3,805,425	+				-0.2
3,805,425	+				-0.8
3,805,425	+				+0.6
3,805,425	+				-2.1
3,805,425	+				-0.2
3,805,425	+				+0.7
3,805,425	+				+0.9
3,805,425	+				+1.0
3,805,425	+				+0.7
3,805,425	+				+0.6
3,805,425	+				+0.0
3,805,425	+				-2.0
3,805,425	+				+0.6
3,805,425	+				+0.9
3,805,425	+				+1.6
3,805,425	+				-0.3
3,805,425	+				-0.1
3,805,425	+				+0.3
3,805,425	+				+0.6
3,805,425	+				-0.3
3,805,426	-				+1.7
3,805,426	-				+1.2
3,805,426	-				+1.3
3,805,426	-				+2.0
3,805,426	-				+0.8
3,805,426	-				+1.1
3,805,426	-				+1.4
3,805,426	-				+1.5
3,805,426	-				+1.2
3,805,426	-				+1.5
3,805,426	-				+0.8
3,805,426	-				+1.2
3,805,426	-				+0.8
3,805,426	-				+1.3
3,805,426	-				+0.5
3,805,426	-				+1.1
3,805,426	-				+1.1
3,805,426	-				+1.5
3,805,426	-				+0.8
3,805,426	-				+0.6
3,805,426	-				+1.0
3,805,426	-				+0.5
3,805,426	-				+1.6
3,805,426	-				+1.7
3,805,426	-				+0.7
3,805,426	-				+1.6
3,805,426	-				+0.0
3,805,426	-				+1.3
3,805,426	-				+1.1
3,805,426	-				+1.1