Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3145 and Psest_3146 overlap by 4 nucleotides Psest_3146 and Psest_3147 overlap by 1 nucleotides Psest_3147 and Psest_3148 overlap by 20 nucleotides Psest_3148 and Psest_3149 are separated by 10 nucleotides Psest_3149 and Psest_3150 overlap by 32 nucleotides Psest_3150 and Psest_3151 are separated by 319 nucleotides
Psest_3145: Psest_3145 - hypothetical protein, at 3,319,351 to 3,319,635
_3145
Psest_3146: Psest_3146 - hypothetical protein, at 3,319,632 to 3,319,844
_3146
Psest_3147: Psest_3147 - hypothetical protein, at 3,319,844 to 3,320,017
_3147
Psest_3148: Psest_3148 - hypothetical protein, at 3,319,998 to 3,320,177
_3148
Psest_3149: Psest_3149 - hypothetical protein, at 3,320,188 to 3,320,370
_3149
Psest_3150: Psest_3150 - hypothetical protein, at 3,320,339 to 3,321,598
_3150
Psest_3151: Psest_3151 - hypothetical protein, at 3,321,918 to 3,322,388
_3151
Position (kb)
3320
3321
3322 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3319.349 kb on + strand at 3319.454 kb on - strand, within Psest_3145 at 3319.587 kb on - strand, within Psest_3145 at 3319.689 kb on - strand, within Psest_3146 at 3319.768 kb on + strand, within Psest_3146 at 3319.793 kb on - strand, within Psest_3146 at 3319.827 kb on - strand at 3319.827 kb on - strand at 3319.827 kb on - strand at 3320.088 kb on - strand, within Psest_3148 at 3320.461 kb on + strand at 3320.540 kb on + strand, within Psest_3150 at 3320.541 kb on - strand, within Psest_3150 at 3320.638 kb on + strand, within Psest_3150 at 3320.665 kb on + strand, within Psest_3150 at 3320.666 kb on - strand, within Psest_3150 at 3320.679 kb on + strand, within Psest_3150 at 3320.701 kb on - strand, within Psest_3150 at 3320.736 kb on - strand, within Psest_3150 at 3320.802 kb on + strand, within Psest_3150 at 3320.904 kb on + strand, within Psest_3150 at 3320.904 kb on + strand, within Psest_3150 at 3320.925 kb on + strand, within Psest_3150 at 3320.981 kb on - strand, within Psest_3150 at 3321.037 kb on + strand, within Psest_3150 at 3321.080 kb on - strand, within Psest_3150 at 3321.194 kb on - strand, within Psest_3150 at 3321.242 kb on + strand, within Psest_3150 at 3321.363 kb on + strand, within Psest_3150 at 3321.364 kb on - strand, within Psest_3150 at 3321.391 kb on + strand, within Psest_3150 at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.514 kb on + strand at 3321.597 kb on - strand at 3321.649 kb on - strand at 3321.675 kb on - strand at 3321.675 kb on - strand at 3321.698 kb on - strand at 3321.932 kb on - strand at 3322.140 kb on + strand, within Psest_3151 at 3322.141 kb on - strand, within Psest_3151 at 3322.143 kb on - strand, within Psest_3151 at 3322.181 kb on + strand, within Psest_3151 at 3322.269 kb on + strand, within Psest_3151 at 3322.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 3,319,349 + -1.0 3,319,454 - Psest_3145 0.36 +0.0 3,319,587 - Psest_3145 0.83 -0.7 3,319,689 - Psest_3146 0.27 -1.2 3,319,768 + Psest_3146 0.64 -2.9 3,319,793 - Psest_3146 0.76 -1.0 3,319,827 - +1.4 3,319,827 - -3.2 3,319,827 - -0.8 3,320,088 - Psest_3148 0.50 -1.9 3,320,461 + -0.8 3,320,540 + Psest_3150 0.16 -2.7 3,320,541 - Psest_3150 0.16 -3.6 3,320,638 + Psest_3150 0.24 +0.4 3,320,665 + Psest_3150 0.26 -1.0 3,320,666 - Psest_3150 0.26 -1.8 3,320,679 + Psest_3150 0.27 -0.9 3,320,701 - Psest_3150 0.29 -2.8 3,320,736 - Psest_3150 0.32 -2.9 3,320,802 + Psest_3150 0.37 -0.7 3,320,904 + Psest_3150 0.45 +0.7 3,320,904 + Psest_3150 0.45 -1.1 3,320,925 + Psest_3150 0.47 -0.0 3,320,981 - Psest_3150 0.51 -2.2 3,321,037 + Psest_3150 0.55 -1.6 3,321,080 - Psest_3150 0.59 -1.2 3,321,194 - Psest_3150 0.68 -2.2 3,321,242 + Psest_3150 0.72 -1.6 3,321,363 + Psest_3150 0.81 -0.4 3,321,364 - Psest_3150 0.81 +0.1 3,321,391 + Psest_3150 0.83 -1.0 3,321,514 + -2.3 3,321,514 + -0.7 3,321,514 + +0.1 3,321,597 - -1.2 3,321,649 - -0.7 3,321,675 - +0.9 3,321,675 - -1.0 3,321,698 - +1.4 3,321,932 - -1.2 3,322,140 + Psest_3151 0.47 +0.1 3,322,141 - Psest_3151 0.47 -1.2 3,322,143 - Psest_3151 0.48 -0.8 3,322,181 + Psest_3151 0.56 -0.3 3,322,269 + Psest_3151 0.75 -0.5 3,322,386 + -1.6
Or see this region's nucleotide sequence