Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0303 and Psest_0304 overlap by 4 nucleotides Psest_0304 and Psest_0305 are separated by 24 nucleotides Psest_0305 and Psest_0306 are separated by 90 nucleotides
Psest_0303: Psest_0303 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 323,006 to 324,058
_0303
Psest_0304: Psest_0304 - Chemotaxis signal transduction protein, at 324,055 to 324,525
_0304
Psest_0305: Psest_0305 - RNA methyltransferase, RsmE family, at 324,550 to 325,266
_0305
Psest_0306: Psest_0306 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 325,357 to 326,760
_0306
Position (kb) 324
325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.552 kb on + strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.751 kb on - strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.861 kb on + strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.862 kb on - strand, within Psest_0303 at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.960 kb on + strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 323.961 kb on - strand at 324.049 kb on + strand at 324.050 kb on - strand at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.053 kb on + strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.054 kb on - strand, within Psest_0305 at 325.190 kb on + strand, within Psest_0305 at 325.190 kb on + strand, within Psest_0305 at 325.190 kb on + strand, within Psest_0305 at 325.190 kb on + strand, within Psest_0305 at 325.191 kb on - strand, within Psest_0305 at 325.191 kb on - strand, within Psest_0305 at 325.275 kb on + strand at 325.276 kb on - strand at 325.276 kb on - strand at 325.276 kb on - strand at 325.303 kb on + strand at 325.331 kb on + strand at 325.331 kb on + strand at 325.344 kb on + strand at 325.344 kb on + strand at 325.345 kb on - strand at 325.345 kb on - strand at 325.419 kb on + strand at 325.484 kb on + strand at 325.499 kb on + strand, within Psest_0306 at 325.499 kb on + strand, within Psest_0306 at 325.499 kb on + strand, within Psest_0306 at 325.500 kb on - strand, within Psest_0306 at 325.500 kb on - strand, within Psest_0306 at 325.553 kb on + strand, within Psest_0306 at 325.554 kb on - strand, within Psest_0306 at 325.796 kb on + strand, within Psest_0306 at 325.796 kb on + strand, within Psest_0306 at 325.796 kb on + strand, within Psest_0306 at 325.796 kb on + strand, within Psest_0306 at 325.797 kb on - strand, within Psest_0306 at 325.797 kb on - strand, within Psest_0306 at 325.797 kb on - strand, within Psest_0306 at 325.797 kb on - strand, within Psest_0306 at 325.841 kb on + strand, within Psest_0306 at 325.841 kb on + strand, within Psest_0306 at 325.842 kb on - strand, within Psest_0306 at 325.853 kb on + strand, within Psest_0306 at 325.854 kb on - strand, within Psest_0306 at 325.854 kb on - strand, within Psest_0306 at 325.854 kb on - strand, within Psest_0306 at 325.854 kb on - strand, within Psest_0306 at 326.018 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.063 kb on + strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.064 kb on - strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.255 kb on + strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306 at 326.256 kb on - strand, within Psest_0306
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 323,552 + Psest_0303 0.52 +0.3 323,552 + Psest_0303 0.52 -0.0 323,552 + Psest_0303 0.52 +1.4 323,552 + Psest_0303 0.52 -0.1 323,552 + Psest_0303 0.52 +1.2 323,552 + Psest_0303 0.52 -1.4 323,552 + Psest_0303 0.52 +0.5 323,552 + Psest_0303 0.52 +0.8 323,751 - Psest_0303 0.71 -1.3 323,751 - Psest_0303 0.71 -0.4 323,751 - Psest_0303 0.71 -1.2 323,861 + Psest_0303 0.81 +0.8 323,861 + Psest_0303 0.81 +0.4 323,861 + Psest_0303 0.81 -0.6 323,861 + Psest_0303 0.81 -0.8 323,861 + Psest_0303 0.81 +0.5 323,862 - Psest_0303 0.81 -0.2 323,862 - Psest_0303 0.81 +0.6 323,862 - Psest_0303 0.81 -0.4 323,862 - Psest_0303 0.81 +0.6 323,862 - Psest_0303 0.81 -1.5 323,862 - Psest_0303 0.81 -0.5 323,862 - Psest_0303 0.81 -1.9 323,862 - Psest_0303 0.81 +1.9 323,862 - Psest_0303 0.81 -1.0 323,862 - Psest_0303 0.81 -0.4 323,960 + +0.7 323,960 + +1.2 323,960 + +0.1 323,960 + +0.9 323,961 - -1.1 323,961 - +0.2 323,961 - -0.1 323,961 - -0.2 323,961 - -0.3 324,049 + +1.0 324,050 - -1.2 325,053 + Psest_0305 0.70 +1.3 325,053 + Psest_0305 0.70 +1.7 325,053 + Psest_0305 0.70 +1.8 325,053 + Psest_0305 0.70 -0.1 325,054 - Psest_0305 0.70 +1.4 325,054 - Psest_0305 0.70 +0.6 325,054 - Psest_0305 0.70 +1.9 325,054 - Psest_0305 0.70 -0.1 325,190 + Psest_0305 0.89 +1.0 325,190 + Psest_0305 0.89 +0.2 325,190 + Psest_0305 0.89 +1.9 325,190 + Psest_0305 0.89 +0.7 325,191 - Psest_0305 0.89 -0.6 325,191 - Psest_0305 0.89 +0.6 325,275 + +0.8 325,276 - +0.4 325,276 - +0.5 325,276 - +0.2 325,303 + +0.8 325,331 + +1.6 325,331 + +0.0 325,344 + +0.3 325,344 + -0.2 325,345 - -0.4 325,345 - +1.1 325,419 + -0.3 325,484 + -0.3 325,499 + Psest_0306 0.10 +0.3 325,499 + Psest_0306 0.10 -1.0 325,499 + Psest_0306 0.10 +0.0 325,500 - Psest_0306 0.10 -2.3 325,500 - Psest_0306 0.10 -0.9 325,553 + Psest_0306 0.14 -0.9 325,554 - Psest_0306 0.14 -1.3 325,796 + Psest_0306 0.31 +0.0 325,796 + Psest_0306 0.31 -0.4 325,796 + Psest_0306 0.31 -0.8 325,796 + Psest_0306 0.31 +0.2 325,797 - Psest_0306 0.31 +0.0 325,797 - Psest_0306 0.31 -1.0 325,797 - Psest_0306 0.31 -0.2 325,797 - Psest_0306 0.31 +0.2 325,841 + Psest_0306 0.34 -0.3 325,841 + Psest_0306 0.34 -0.3 325,842 - Psest_0306 0.35 -1.4 325,853 + Psest_0306 0.35 +0.3 325,854 - Psest_0306 0.35 -1.0 325,854 - Psest_0306 0.35 -2.0 325,854 - Psest_0306 0.35 -1.5 325,854 - Psest_0306 0.35 -0.2 326,018 + Psest_0306 0.47 -0.8 326,063 + Psest_0306 0.50 -1.6 326,063 + Psest_0306 0.50 +0.1 326,063 + Psest_0306 0.50 -0.4 326,063 + Psest_0306 0.50 -1.0 326,063 + Psest_0306 0.50 -2.3 326,063 + Psest_0306 0.50 -2.3 326,063 + Psest_0306 0.50 -0.2 326,064 - Psest_0306 0.50 -0.6 326,064 - Psest_0306 0.50 -1.6 326,064 - Psest_0306 0.50 -0.2 326,064 - Psest_0306 0.50 -1.5 326,064 - Psest_0306 0.50 -0.6 326,064 - Psest_0306 0.50 -0.2 326,064 - Psest_0306 0.50 -0.1 326,255 + Psest_0306 0.64 -2.8 326,255 + Psest_0306 0.64 -1.6 326,255 + Psest_0306 0.64 -1.0 326,255 + Psest_0306 0.64 +0.5 326,255 + Psest_0306 0.64 -2.2 326,255 + Psest_0306 0.64 -1.3 326,255 + Psest_0306 0.64 -0.2 326,255 + Psest_0306 0.64 -0.3 326,256 - Psest_0306 0.64 -1.8 326,256 - Psest_0306 0.64 -1.4 326,256 - Psest_0306 0.64 -0.9 326,256 - Psest_0306 0.64 -1.2 326,256 - Psest_0306 0.64 -1.4 326,256 - Psest_0306 0.64 -2.1 326,256 - Psest_0306 0.64 -0.4 326,256 - Psest_0306 0.64 +1.0
Or see this region's nucleotide sequence