Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0298

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0296 and Psest_0297 are separated by 236 nucleotidesPsest_0297 and Psest_0298 are separated by 43 nucleotidesPsest_0298 and Psest_0299 are separated by 41 nucleotidesPsest_0299 and Psest_0300 are separated by 76 nucleotides Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092 _0296 Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736 _0297 Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145 _0298 Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723 _0299 Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848 _0300 Position (kb) 311 312 313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.800 kb on + strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.960 kb on - strand, within Psest_0296at 310.978 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 311.206 kb on + strandat 311.229 kb on + strandat 311.229 kb on + strandat 311.230 kb on - strandat 311.288 kb on + strandat 311.289 kb on - strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.300 kb on - strandat 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.418 kb on - strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.768 kb on + strandat 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.926 kb on - strand, within Psest_0298at 312.080 kb on + strand, within Psest_0298at 312.081 kb on - strand, within Psest_0298at 312.232 kb on - strandat 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.707 kb on + strandat 312.708 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.811 kb on - strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.818 kb on - strandat 312.825 kb on + strandat 312.891 kb on + strandat 312.891 kb on + strandat 312.892 kb on - strandat 312.892 kb on - strandat 312.914 kb on + strandat 312.915 kb on - strandat 312.923 kb on - strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.975 kb on + strandat 312.976 kb on - strandat 312.976 kb on - strandat 313.083 kb on - strand, within Psest_0300

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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310,791 + Psest_0296 0.68 -2.8
310,791 + Psest_0296 0.68 -4.0
310,791 + Psest_0296 0.68 -2.2
310,791 + Psest_0296 0.68 -0.6
310,800 + Psest_0296 0.69 -1.6
310,801 - Psest_0296 0.69 -1.3
310,801 - Psest_0296 0.69 -0.6
310,801 - Psest_0296 0.69 -2.2
310,801 - Psest_0296 0.69 -1.8
310,806 + Psest_0296 0.70 -2.9
310,806 + Psest_0296 0.70 -4.5
310,806 + Psest_0296 0.70 +0.2
310,806 + Psest_0296 0.70 -1.0
310,806 + Psest_0296 0.70 -4.7
310,806 + Psest_0296 0.70 -3.5
310,807 - Psest_0296 0.70 -2.7
310,807 - Psest_0296 0.70 -1.3
310,807 - Psest_0296 0.70 -2.0
310,960 - Psest_0296 0.86 -1.6
310,978 + Psest_0296 0.88 +1.0
310,980 + Psest_0296 0.88 -1.6
310,980 + Psest_0296 0.88 -2.5
310,980 + Psest_0296 0.88 -4.2
310,980 + Psest_0296 0.88 -1.8
310,980 + Psest_0296 0.88 -1.8
310,980 + Psest_0296 0.88 -2.2
310,980 + Psest_0296 0.88 -2.6
310,981 - Psest_0296 0.88 -2.6
310,981 - Psest_0296 0.88 -2.8
310,981 - Psest_0296 0.88 -0.6
310,981 - Psest_0296 0.88 -1.3
310,981 - Psest_0296 0.88 -3.8
310,981 - Psest_0296 0.88 -2.2
310,981 - Psest_0296 0.88 -2.8
310,981 - Psest_0296 0.88 -2.4
310,981 - Psest_0296 0.88 -1.0
310,981 - Psest_0296 0.88 -2.7
310,981 - Psest_0296 0.88 -1.8
311,206 + -1.8
311,229 + +0.0
311,229 + -1.0
311,230 - -1.5
311,288 + -4.3
311,289 - +0.0
311,299 + -0.6
311,299 + -1.4
311,299 + -1.1
311,299 + -0.8
311,300 - +0.2
311,417 + Psest_0297 0.22 -0.6
311,417 + Psest_0297 0.22 -2.0
311,417 + Psest_0297 0.22 -2.9
311,417 + Psest_0297 0.22 +1.4
311,417 + Psest_0297 0.22 +0.7
311,418 - Psest_0297 0.22 -1.3
311,505 + Psest_0297 0.43 -1.8
311,505 + Psest_0297 0.43 -1.5
311,505 + Psest_0297 0.43 -2.0
311,505 + Psest_0297 0.43 -1.6
311,506 - Psest_0297 0.43 -1.9
311,506 - Psest_0297 0.43 -2.1
311,629 - Psest_0297 0.74 -3.6
311,629 - Psest_0297 0.74 -1.6
311,768 + -2.0
311,822 + Psest_0298 0.11 -3.7
311,822 + Psest_0298 0.11 -3.0
311,822 + Psest_0298 0.11 -1.8
311,822 + Psest_0298 0.11 -3.0
311,822 + Psest_0298 0.11 -3.8
311,822 + Psest_0298 0.11 -4.0
311,822 + Psest_0298 0.11 -1.1
311,822 + Psest_0298 0.11 -0.4
311,823 - Psest_0298 0.12 -1.6
311,823 - Psest_0298 0.12 -3.1
311,823 - Psest_0298 0.12 -3.5
311,823 - Psest_0298 0.12 -4.5
311,926 - Psest_0298 0.40 -1.6
312,080 + Psest_0298 0.82 -4.2
312,081 - Psest_0298 0.82 -3.0
312,232 - -2.9
312,630 + Psest_0299 0.82 +0.4
312,630 + Psest_0299 0.82 -1.3
312,630 + Psest_0299 0.82 -0.5
312,630 + Psest_0299 0.82 -0.6
312,630 + Psest_0299 0.82 +0.0
312,630 + Psest_0299 0.82 -1.6
312,630 + Psest_0299 0.82 -0.3
312,630 + Psest_0299 0.82 -2.0
312,630 + Psest_0299 0.82 -1.7
312,631 - Psest_0299 0.83 -3.3
312,631 - Psest_0299 0.83 +0.0
312,707 + +1.6
312,708 - +1.0
312,722 - +0.4
312,722 - -0.9
312,722 - -1.4
312,727 + -0.6
312,727 + -0.5
312,727 + +0.0
312,727 + +0.8
312,727 + +1.1
312,727 + +0.1
312,728 - -1.3
312,728 - -1.4
312,728 - -1.8
312,728 - +1.2
312,728 - -3.1
312,728 - -3.6
312,728 - -3.0
312,728 - -3.2
312,810 + -1.9
312,810 + -1.9
312,810 + -1.4
312,810 + -1.3
312,811 - -1.0
312,817 + -1.1
312,817 + -1.2
312,817 + -1.8
312,818 - -2.0
312,825 + -2.3
312,891 + -2.1
312,891 + -1.0
312,892 - +0.2
312,892 - -1.4
312,914 + +1.6
312,915 - -3.2
312,923 - -0.8
312,947 + -0.4
312,947 + -3.0
312,947 + -0.8
312,947 + -2.5
312,947 + +1.4
312,947 + -1.6
312,948 - -0.4
312,948 - -3.5
312,948 - -1.2
312,948 - -2.4
312,975 + -1.3
312,976 - +0.0
312,976 - -2.9
313,083 - Psest_0300 0.14 -2.2

Or see this region's nucleotide sequence