Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2933 and Psest_2934 are separated by 44 nucleotides Psest_2934 and Psest_2935 are separated by 12 nucleotides Psest_2935 and Psest_2936 are separated by 110 nucleotides
Psest_2933: Psest_2933 - Signal transduction histidine kinase, at 3,129,820 to 3,132,564
_2933
Psest_2934: Psest_2934 - Uncharacterized protein conserved in bacteria, at 3,132,609 to 3,132,836
_2934
Psest_2935: Psest_2935 - hypothetical protein, at 3,132,849 to 3,133,277
_2935
Psest_2936: Psest_2936 - Cyanate permease, at 3,133,388 to 3,134,545
_2936
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3131.885 kb on - strand, within Psest_2933 at 3132.007 kb on + strand, within Psest_2933 at 3132.007 kb on + strand, within Psest_2933 at 3132.112 kb on + strand, within Psest_2933 at 3132.296 kb on - strand at 3132.380 kb on + strand at 3132.380 kb on + strand at 3132.523 kb on + strand at 3132.523 kb on + strand at 3132.541 kb on + strand at 3132.541 kb on + strand at 3132.541 kb on + strand at 3132.541 kb on + strand at 3132.562 kb on + strand at 3132.562 kb on + strand at 3133.048 kb on + strand, within Psest_2935 at 3133.048 kb on + strand, within Psest_2935 at 3133.256 kb on - strand at 3133.318 kb on + strand at 3133.318 kb on + strand at 3133.319 kb on - strand at 3133.319 kb on - strand at 3133.472 kb on - strand at 3133.472 kb on - strand at 3133.472 kb on - strand at 3133.472 kb on - strand at 3133.472 kb on - strand at 3133.596 kb on + strand, within Psest_2936 at 3133.596 kb on + strand, within Psest_2936 at 3133.597 kb on - strand, within Psest_2936 at 3133.597 kb on - strand, within Psest_2936 at 3133.706 kb on + strand, within Psest_2936 at 3133.706 kb on + strand, within Psest_2936 at 3133.707 kb on - strand, within Psest_2936 at 3133.891 kb on - strand, within Psest_2936 at 3133.891 kb on - strand, within Psest_2936 at 3133.891 kb on - strand, within Psest_2936 at 3133.891 kb on - strand, within Psest_2936 at 3133.917 kb on + strand, within Psest_2936 at 3133.917 kb on + strand, within Psest_2936 at 3133.918 kb on - strand, within Psest_2936 at 3133.918 kb on - strand, within Psest_2936 at 3134.103 kb on - strand, within Psest_2936 at 3134.175 kb on + strand, within Psest_2936 at 3134.175 kb on + strand, within Psest_2936 at 3134.176 kb on - strand, within Psest_2936 at 3134.176 kb on - strand, within Psest_2936
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 3,131,885 - Psest_2933 0.75 -2.1 3,132,007 + Psest_2933 0.80 -3.4 3,132,007 + Psest_2933 0.80 -2.0 3,132,112 + Psest_2933 0.83 -0.8 3,132,296 - +0.1 3,132,380 + -2.5 3,132,380 + -2.0 3,132,523 + -0.8 3,132,523 + -0.0 3,132,541 + -1.6 3,132,541 + -1.7 3,132,541 + -1.4 3,132,541 + -3.1 3,132,562 + -1.5 3,132,562 + -1.0 3,133,048 + Psest_2935 0.46 -4.1 3,133,048 + Psest_2935 0.46 +0.1 3,133,256 - -2.7 3,133,318 + -2.1 3,133,318 + +0.7 3,133,319 - +0.1 3,133,319 - +0.6 3,133,472 - -0.9 3,133,472 - +0.5 3,133,472 - +1.7 3,133,472 - -1.8 3,133,472 - -1.1 3,133,596 + Psest_2936 0.18 -1.2 3,133,596 + Psest_2936 0.18 -0.3 3,133,597 - Psest_2936 0.18 +1.0 3,133,597 - Psest_2936 0.18 -0.7 3,133,706 + Psest_2936 0.27 -0.5 3,133,706 + Psest_2936 0.27 -1.0 3,133,707 - Psest_2936 0.28 -1.5 3,133,891 - Psest_2936 0.43 -0.1 3,133,891 - Psest_2936 0.43 -2.3 3,133,891 - Psest_2936 0.43 +1.1 3,133,891 - Psest_2936 0.43 +0.8 3,133,917 + Psest_2936 0.46 -0.9 3,133,917 + Psest_2936 0.46 -0.7 3,133,918 - Psest_2936 0.46 -1.6 3,133,918 - Psest_2936 0.46 +0.0 3,134,103 - Psest_2936 0.62 +1.0 3,134,175 + Psest_2936 0.68 -1.4 3,134,175 + Psest_2936 0.68 -0.7 3,134,176 - Psest_2936 0.68 -1.7 3,134,176 - Psest_2936 0.68 +1.4
Or see this region's nucleotide sequence