Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0262

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0261 and Psest_0262 are separated by 83 nucleotidesPsest_0262 and Psest_0263 are separated by 185 nucleotides Psest_0261: Psest_0261 - alternative sigma factor RpoH, at 275,656 to 276,510 _0261 Psest_0262: Psest_0262 - PAS domain S-box, at 276,594 to 279,164 _0262 Psest_0263: Psest_0263 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 279,350 to 281,278 _0263 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 275.622 kb on + strandat 275.622 kb on + strandat 275.622 kb on + strandat 276.524 kb on - strandat 276.642 kb on + strandat 276.747 kb on - strandat 276.841 kb on + strandat 276.923 kb on + strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 276.924 kb on - strand, within Psest_0262at 277.176 kb on + strand, within Psest_0262at 277.234 kb on - strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.386 kb on + strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.387 kb on - strand, within Psest_0262at 277.768 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.981 kb on + strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 277.982 kb on - strand, within Psest_0262at 278.024 kb on + strand, within Psest_0262at 278.024 kb on + strand, within Psest_0262at 278.025 kb on - strand, within Psest_0262at 278.299 kb on + strand, within Psest_0262at 278.300 kb on - strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.338 kb on + strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.339 kb on - strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.374 kb on + strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.375 kb on - strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.378 kb on + strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.379 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.450 kb on - strand, within Psest_0262at 278.512 kb on + strand, within Psest_0262at 278.520 kb on + strand, within Psest_0262at 278.521 kb on - strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.524 kb on + strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.525 kb on - strand, within Psest_0262at 278.567 kb on + strand, within Psest_0262at 278.568 kb on - strand, within Psest_0262at 278.647 kb on + strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.648 kb on - strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.711 kb on + strand, within Psest_0262at 278.712 kb on - strand, within Psest_0262at 278.713 kb on + strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.714 kb on - strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.872 kb on + strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 278.873 kb on - strand, within Psest_0262at 279.075 kb on + strandat 279.248 kb on + strandat 279.249 kb on - strandat 279.249 kb on - strandat 279.314 kb on + strandat 279.314 kb on + strandat 279.315 kb on - strandat 279.315 kb on - strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.515 kb on + strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.516 kb on - strandat 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.622 kb on + strand, within Psest_0263at 279.623 kb on - strand, within Psest_0263at 279.812 kb on - strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 279.958 kb on + strand, within Psest_0263at 280.074 kb on + strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.075 kb on - strand, within Psest_0263at 280.086 kb on + strand, within Psest_0263

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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275,622 + +2.0
275,622 + +1.3
275,622 + +1.7
276,524 - -1.1
276,642 + -1.9
276,747 - +0.3
276,841 + +0.5
276,923 + Psest_0262 0.13 -0.4
276,924 - Psest_0262 0.13 -0.4
276,924 - Psest_0262 0.13 +0.1
276,924 - Psest_0262 0.13 -0.2
276,924 - Psest_0262 0.13 -1.6
276,924 - Psest_0262 0.13 +0.5
276,924 - Psest_0262 0.13 -0.1
277,176 + Psest_0262 0.23 -1.2
277,234 - Psest_0262 0.25 -0.9
277,386 + Psest_0262 0.31 -0.1
277,386 + Psest_0262 0.31 -0.3
277,386 + Psest_0262 0.31 -0.4
277,387 - Psest_0262 0.31 +0.2
277,387 - Psest_0262 0.31 -1.3
277,387 - Psest_0262 0.31 -1.4
277,387 - Psest_0262 0.31 -2.0
277,387 - Psest_0262 0.31 +0.3
277,387 - Psest_0262 0.31 -0.2
277,387 - Psest_0262 0.31 -2.7
277,768 + Psest_0262 0.46 +0.2
277,981 + Psest_0262 0.54 -0.9
277,981 + Psest_0262 0.54 -0.3
277,981 + Psest_0262 0.54 -0.5
277,981 + Psest_0262 0.54 -0.5
277,981 + Psest_0262 0.54 +0.9
277,981 + Psest_0262 0.54 +0.2
277,981 + Psest_0262 0.54 -1.7
277,981 + Psest_0262 0.54 +0.0
277,981 + Psest_0262 0.54 -2.8
277,981 + Psest_0262 0.54 +0.3
277,981 + Psest_0262 0.54 +0.1
277,981 + Psest_0262 0.54 +0.4
277,981 + Psest_0262 0.54 +0.1
277,981 + Psest_0262 0.54 -0.3
277,981 + Psest_0262 0.54 +0.6
277,981 + Psest_0262 0.54 -0.9
277,981 + Psest_0262 0.54 +0.7
277,981 + Psest_0262 0.54 -2.3
277,981 + Psest_0262 0.54 -0.8
277,981 + Psest_0262 0.54 -0.4
277,982 - Psest_0262 0.54 +0.8
277,982 - Psest_0262 0.54 -1.4
277,982 - Psest_0262 0.54 -0.4
277,982 - Psest_0262 0.54 +0.3
277,982 - Psest_0262 0.54 +0.8
277,982 - Psest_0262 0.54 +0.6
277,982 - Psest_0262 0.54 -0.7
277,982 - Psest_0262 0.54 -1.4
277,982 - Psest_0262 0.54 +1.3
278,024 + Psest_0262 0.56 +0.6
278,024 + Psest_0262 0.56 +0.8
278,025 - Psest_0262 0.56 -0.8
278,299 + Psest_0262 0.66 -0.0
278,300 - Psest_0262 0.66 -1.5
278,338 + Psest_0262 0.68 -1.2
278,338 + Psest_0262 0.68 +0.3
278,338 + Psest_0262 0.68 -0.5
278,338 + Psest_0262 0.68 +0.2
278,338 + Psest_0262 0.68 -2.1
278,338 + Psest_0262 0.68 -0.4
278,338 + Psest_0262 0.68 -0.1
278,338 + Psest_0262 0.68 +0.5
278,338 + Psest_0262 0.68 -1.1
278,338 + Psest_0262 0.68 -0.1
278,338 + Psest_0262 0.68 +0.1
278,338 + Psest_0262 0.68 +1.4
278,338 + Psest_0262 0.68 -0.6
278,338 + Psest_0262 0.68 +0.5
278,338 + Psest_0262 0.68 +0.6
278,338 + Psest_0262 0.68 +1.7
278,338 + Psest_0262 0.68 +0.2
278,338 + Psest_0262 0.68 +1.3
278,338 + Psest_0262 0.68 +0.5
278,338 + Psest_0262 0.68 +1.2
278,338 + Psest_0262 0.68 +2.2
278,338 + Psest_0262 0.68 -2.3
278,339 - Psest_0262 0.68 -1.4
278,339 - Psest_0262 0.68 -1.1
278,339 - Psest_0262 0.68 -2.1
278,339 - Psest_0262 0.68 -0.3
278,339 - Psest_0262 0.68 -2.7
278,339 - Psest_0262 0.68 -0.2
278,339 - Psest_0262 0.68 -1.4
278,339 - Psest_0262 0.68 -2.5
278,339 - Psest_0262 0.68 -0.4
278,339 - Psest_0262 0.68 -0.7
278,339 - Psest_0262 0.68 -0.1
278,339 - Psest_0262 0.68 -0.2
278,339 - Psest_0262 0.68 -1.1
278,339 - Psest_0262 0.68 -0.5
278,339 - Psest_0262 0.68 -1.7
278,339 - Psest_0262 0.68 -0.3
278,339 - Psest_0262 0.68 -0.9
278,339 - Psest_0262 0.68 -1.7
278,339 - Psest_0262 0.68 -1.1
278,339 - Psest_0262 0.68 -1.1
278,339 - Psest_0262 0.68 -0.0
278,339 - Psest_0262 0.68 -0.7
278,339 - Psest_0262 0.68 -1.5
278,374 + Psest_0262 0.69 -0.2
278,374 + Psest_0262 0.69 +0.4
278,374 + Psest_0262 0.69 -1.7
278,374 + Psest_0262 0.69 +0.7
278,374 + Psest_0262 0.69 +0.9
278,374 + Psest_0262 0.69 -0.2
278,374 + Psest_0262 0.69 +0.2
278,374 + Psest_0262 0.69 -2.1
278,374 + Psest_0262 0.69 -3.0
278,375 - Psest_0262 0.69 -0.4
278,375 - Psest_0262 0.69 -1.0
278,375 - Psest_0262 0.69 +0.1
278,375 - Psest_0262 0.69 -1.1
278,375 - Psest_0262 0.69 -0.4
278,375 - Psest_0262 0.69 -0.2
278,375 - Psest_0262 0.69 +0.4
278,375 - Psest_0262 0.69 -1.4
278,375 - Psest_0262 0.69 -2.7
278,375 - Psest_0262 0.69 -2.2
278,375 - Psest_0262 0.69 -2.8
278,375 - Psest_0262 0.69 -0.7
278,375 - Psest_0262 0.69 -1.8
278,375 - Psest_0262 0.69 -1.6
278,375 - Psest_0262 0.69 -0.8
278,378 + Psest_0262 0.69 -0.9
278,378 + Psest_0262 0.69 -0.5
278,378 + Psest_0262 0.69 -0.8
278,378 + Psest_0262 0.69 +0.2
278,378 + Psest_0262 0.69 -2.5
278,378 + Psest_0262 0.69 +0.5
278,378 + Psest_0262 0.69 +0.3
278,378 + Psest_0262 0.69 -0.7
278,378 + Psest_0262 0.69 -1.4
278,378 + Psest_0262 0.69 -2.1
278,378 + Psest_0262 0.69 -0.3
278,378 + Psest_0262 0.69 +0.1
278,379 - Psest_0262 0.69 -0.3
278,379 - Psest_0262 0.69 -0.6
278,379 - Psest_0262 0.69 -2.4
278,379 - Psest_0262 0.69 -2.0
278,379 - Psest_0262 0.69 +0.5
278,379 - Psest_0262 0.69 -0.6
278,379 - Psest_0262 0.69 -2.8
278,379 - Psest_0262 0.69 -1.2
278,379 - Psest_0262 0.69 -1.6
278,379 - Psest_0262 0.69 -0.4
278,379 - Psest_0262 0.69 -1.3
278,379 - Psest_0262 0.69 -0.3
278,379 - Psest_0262 0.69 -1.4
278,379 - Psest_0262 0.69 -3.0
278,379 - Psest_0262 0.69 -1.1
278,379 - Psest_0262 0.69 -0.1
278,379 - Psest_0262 0.69 -0.7
278,379 - Psest_0262 0.69 +0.1
278,379 - Psest_0262 0.69 +0.2
278,379 - Psest_0262 0.69 -1.1
278,379 - Psest_0262 0.69 -0.7
278,379 - Psest_0262 0.69 -1.8
278,450 - Psest_0262 0.72 -0.9
278,450 - Psest_0262 0.72 -0.7
278,450 - Psest_0262 0.72 -0.3
278,512 + Psest_0262 0.75 -1.2
278,520 + Psest_0262 0.75 -0.4
278,521 - Psest_0262 0.75 +0.2
278,524 + Psest_0262 0.75 -0.7
278,524 + Psest_0262 0.75 -0.4
278,524 + Psest_0262 0.75 +0.1
278,524 + Psest_0262 0.75 -0.1
278,524 + Psest_0262 0.75 -0.1
278,524 + Psest_0262 0.75 -0.6
278,524 + Psest_0262 0.75 +0.4
278,525 - Psest_0262 0.75 -2.8
278,525 - Psest_0262 0.75 -0.7
278,525 - Psest_0262 0.75 -0.4
278,525 - Psest_0262 0.75 -1.6
278,525 - Psest_0262 0.75 -0.1
278,525 - Psest_0262 0.75 +0.2
278,567 + Psest_0262 0.77 +0.2
278,568 - Psest_0262 0.77 -2.1
278,647 + Psest_0262 0.80 +0.1
278,648 - Psest_0262 0.80 -0.9
278,648 - Psest_0262 0.80 -3.3
278,648 - Psest_0262 0.80 -1.4
278,648 - Psest_0262 0.80 -1.0
278,648 - Psest_0262 0.80 -2.3
278,648 - Psest_0262 0.80 -1.3
278,648 - Psest_0262 0.80 -1.3
278,711 + Psest_0262 0.82 +0.0
278,711 + Psest_0262 0.82 -2.1
278,711 + Psest_0262 0.82 +0.4
278,712 - Psest_0262 0.82 -0.5
278,713 + Psest_0262 0.82 +0.2
278,714 - Psest_0262 0.82 -0.2
278,714 - Psest_0262 0.82 -2.4
278,714 - Psest_0262 0.82 -2.9
278,714 - Psest_0262 0.82 -1.7
278,714 - Psest_0262 0.82 -0.1
278,872 + Psest_0262 0.89 +0.8
278,872 + Psest_0262 0.89 +0.6
278,872 + Psest_0262 0.89 -3.5
278,872 + Psest_0262 0.89 +0.8
278,872 + Psest_0262 0.89 -0.7
278,873 - Psest_0262 0.89 -0.7
278,873 - Psest_0262 0.89 -1.4
278,873 - Psest_0262 0.89 +0.3
278,873 - Psest_0262 0.89 -0.7
278,873 - Psest_0262 0.89 -2.4
278,873 - Psest_0262 0.89 -2.5
278,873 - Psest_0262 0.89 -0.5
278,873 - Psest_0262 0.89 -3.3
279,075 + +0.0
279,248 + +0.2
279,249 - -0.5
279,249 - +0.3
279,314 + +0.2
279,314 + +0.5
279,315 - +0.5
279,315 - -0.0
279,515 + -0.3
279,515 + -0.9
279,515 + +0.5
279,515 + -1.1
279,515 + +0.2
279,516 - -1.6
279,516 - -0.1
279,516 - +0.3
279,622 + Psest_0263 0.14 -1.5
279,622 + Psest_0263 0.14 +0.3
279,622 + Psest_0263 0.14 -4.0
279,623 - Psest_0263 0.14 +0.3
279,812 - Psest_0263 0.24 +1.5
279,958 + Psest_0263 0.32 -1.3
279,958 + Psest_0263 0.32 +0.9
279,958 + Psest_0263 0.32 -1.1
279,958 + Psest_0263 0.32 +0.2
280,074 + Psest_0263 0.38 +0.8
280,075 - Psest_0263 0.38 -1.5
280,075 - Psest_0263 0.38 -1.3
280,075 - Psest_0263 0.38 +0.1
280,086 + Psest_0263 0.38 +1.6

Or see this region's nucleotide sequence