Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2550 and Psest_2551 are separated by 18 nucleotides Psest_2551 and Psest_2552 are separated by 4 nucleotides Psest_2552 and Psest_2553 are separated by 198 nucleotides Psest_2553 and Psest_2554 are separated by 38 nucleotides
Psest_2550: Psest_2550 - Rhodanese-like domain./Cyclic nucleotide-binding domain., at 2,730,385 to 2,731,485
_2550
Psest_2551: Psest_2551 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,731,504 to 2,732,445
_2551
Psest_2552: Psest_2552 - hypothetical protein, at 2,732,450 to 2,733,805
_2552
Psest_2553: Psest_2553 - SnoaL-like polyketide cyclase., at 2,734,004 to 2,734,426
_2553
Psest_2554: Psest_2554 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 2,734,465 to 2,736,495
_2554
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2731.602 kb on - strand, within Psest_2551 at 2731.602 kb on - strand, within Psest_2551 at 2731.641 kb on + strand, within Psest_2551 at 2731.641 kb on + strand, within Psest_2551 at 2731.641 kb on + strand, within Psest_2551 at 2731.642 kb on - strand, within Psest_2551 at 2731.642 kb on - strand, within Psest_2551 at 2731.642 kb on - strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.649 kb on + strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.650 kb on - strand, within Psest_2551 at 2731.758 kb on - strand, within Psest_2551 at 2731.917 kb on + strand, within Psest_2551 at 2731.926 kb on - strand, within Psest_2551 at 2732.131 kb on + strand, within Psest_2551 at 2732.131 kb on + strand, within Psest_2551 at 2732.132 kb on - strand, within Psest_2551 at 2732.132 kb on - strand, within Psest_2551 at 2732.132 kb on - strand, within Psest_2551 at 2732.132 kb on - strand, within Psest_2551 at 2732.132 kb on - strand, within Psest_2551 at 2732.300 kb on - strand, within Psest_2551 at 2732.353 kb on + strand at 2732.354 kb on - strand at 2732.354 kb on - strand at 2732.354 kb on - strand at 2732.357 kb on - strand at 2732.456 kb on - strand at 2732.602 kb on - strand, within Psest_2552 at 2732.623 kb on - strand, within Psest_2552 at 2732.658 kb on + strand, within Psest_2552 at 2732.658 kb on + strand, within Psest_2552 at 2732.659 kb on - strand, within Psest_2552 at 2732.730 kb on + strand, within Psest_2552 at 2732.731 kb on - strand, within Psest_2552 at 2732.741 kb on + strand, within Psest_2552 at 2732.741 kb on + strand, within Psest_2552 at 2732.860 kb on - strand, within Psest_2552 at 2732.898 kb on + strand, within Psest_2552 at 2732.899 kb on - strand, within Psest_2552 at 2733.303 kb on + strand, within Psest_2552 at 2733.304 kb on - strand, within Psest_2552 at 2733.657 kb on + strand, within Psest_2552 at 2733.658 kb on - strand, within Psest_2552 at 2733.658 kb on - strand, within Psest_2552 at 2733.658 kb on - strand, within Psest_2552 at 2733.658 kb on - strand, within Psest_2552 at 2733.658 kb on - strand, within Psest_2552 at 2733.660 kb on - strand, within Psest_2552 at 2733.773 kb on + strand at 2733.774 kb on - strand at 2734.001 kb on - strand at 2734.290 kb on + strand, within Psest_2553 at 2734.388 kb on - strand at 2734.413 kb on - strand at 2734.426 kb on + strand at 2734.427 kb on - strand at 2734.430 kb on + strand at 2734.430 kb on + strand at 2734.431 kb on - strand at 2734.431 kb on - strand at 2734.431 kb on - strand at 2734.431 kb on - strand at 2734.697 kb on + strand, within Psest_2554 at 2734.698 kb on - strand, within Psest_2554
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 2,731,602 - Psest_2551 0.10 +1.3 2,731,602 - Psest_2551 0.10 +1.5 2,731,641 + Psest_2551 0.15 -1.2 2,731,641 + Psest_2551 0.15 -3.2 2,731,641 + Psest_2551 0.15 +0.2 2,731,642 - Psest_2551 0.15 +1.3 2,731,642 - Psest_2551 0.15 +0.3 2,731,642 - Psest_2551 0.15 +1.2 2,731,649 + Psest_2551 0.15 +1.2 2,731,649 + Psest_2551 0.15 -0.1 2,731,649 + Psest_2551 0.15 -0.9 2,731,649 + Psest_2551 0.15 +0.4 2,731,649 + Psest_2551 0.15 -0.3 2,731,649 + Psest_2551 0.15 +0.4 2,731,649 + Psest_2551 0.15 -2.9 2,731,649 + Psest_2551 0.15 -0.4 2,731,649 + Psest_2551 0.15 +0.5 2,731,649 + Psest_2551 0.15 -1.8 2,731,649 + Psest_2551 0.15 -0.8 2,731,649 + Psest_2551 0.15 +0.5 2,731,649 + Psest_2551 0.15 +1.1 2,731,649 + Psest_2551 0.15 -0.2 2,731,649 + Psest_2551 0.15 +0.3 2,731,650 - Psest_2551 0.15 -1.0 2,731,650 - Psest_2551 0.15 +1.6 2,731,650 - Psest_2551 0.15 +0.3 2,731,650 - Psest_2551 0.15 +1.4 2,731,650 - Psest_2551 0.15 +1.7 2,731,650 - Psest_2551 0.15 +1.1 2,731,650 - Psest_2551 0.15 +0.4 2,731,650 - Psest_2551 0.15 +0.5 2,731,650 - Psest_2551 0.15 +0.4 2,731,650 - Psest_2551 0.15 +1.2 2,731,650 - Psest_2551 0.15 +1.9 2,731,650 - Psest_2551 0.15 +0.9 2,731,650 - Psest_2551 0.15 +0.9 2,731,650 - Psest_2551 0.15 +1.2 2,731,650 - Psest_2551 0.15 -0.8 2,731,650 - Psest_2551 0.15 +0.3 2,731,650 - Psest_2551 0.15 +0.2 2,731,650 - Psest_2551 0.15 +0.7 2,731,650 - Psest_2551 0.15 +1.4 2,731,758 - Psest_2551 0.27 +1.5 2,731,917 + Psest_2551 0.44 -1.0 2,731,926 - Psest_2551 0.45 +1.7 2,732,131 + Psest_2551 0.67 +0.7 2,732,131 + Psest_2551 0.67 +0.4 2,732,132 - Psest_2551 0.67 -0.5 2,732,132 - Psest_2551 0.67 +0.9 2,732,132 - Psest_2551 0.67 +0.6 2,732,132 - Psest_2551 0.67 +0.5 2,732,132 - Psest_2551 0.67 +0.9 2,732,300 - Psest_2551 0.85 +1.3 2,732,353 + -3.7 2,732,354 - +1.1 2,732,354 - +1.7 2,732,354 - +1.1 2,732,357 - +1.9 2,732,456 - +0.1 2,732,602 - Psest_2552 0.11 +0.6 2,732,623 - Psest_2552 0.13 +0.2 2,732,658 + Psest_2552 0.15 -1.7 2,732,658 + Psest_2552 0.15 -2.0 2,732,659 - Psest_2552 0.15 -0.1 2,732,730 + Psest_2552 0.21 -0.7 2,732,731 - Psest_2552 0.21 +0.2 2,732,741 + Psest_2552 0.21 -0.8 2,732,741 + Psest_2552 0.21 -0.7 2,732,860 - Psest_2552 0.30 +0.8 2,732,898 + Psest_2552 0.33 -0.2 2,732,899 - Psest_2552 0.33 +1.1 2,733,303 + Psest_2552 0.63 +0.0 2,733,304 - Psest_2552 0.63 +0.8 2,733,657 + Psest_2552 0.89 +0.0 2,733,658 - Psest_2552 0.89 +1.9 2,733,658 - Psest_2552 0.89 +0.3 2,733,658 - Psest_2552 0.89 -0.1 2,733,658 - Psest_2552 0.89 +1.2 2,733,658 - Psest_2552 0.89 -0.1 2,733,660 - Psest_2552 0.89 +0.7 2,733,773 + -0.4 2,733,774 - +0.9 2,734,001 - -1.2 2,734,290 + Psest_2553 0.68 -0.9 2,734,388 - -0.2 2,734,413 - +0.3 2,734,426 + +0.2 2,734,427 - -0.4 2,734,430 + -0.3 2,734,430 + +0.4 2,734,431 - -0.3 2,734,431 - +1.2 2,734,431 - +0.4 2,734,431 - -1.2 2,734,697 + Psest_2554 0.11 +0.1 2,734,698 - Psest_2554 0.11 +0.2
Or see this region's nucleotide sequence