Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2372

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2369 and Psest_2370 overlap by 12 nucleotidesPsest_2370 and Psest_2371 are separated by 336 nucleotidesPsest_2371 and Psest_2372 are separated by 128 nucleotidesPsest_2372 and Psest_2373 are separated by 90 nucleotidesPsest_2373 and Psest_2374 overlap by 1 nucleotidesPsest_2374 and Psest_2375 overlap by 1 nucleotides Psest_2369: Psest_2369 - Transcriptional regulator, at 2,523,321 to 2,523,941 _2369 Psest_2370: Psest_2370 - Protein of unknown function (DUF1652)., at 2,523,930 to 2,524,202 _2370 Psest_2371: Psest_2371 - tRNA_Ser_TGA, at 2,524,539 to 2,524,628 _2371 Psest_2372: Psest_2372 - Integral membrane protein, interacts with FtsH, at 2,524,757 to 2,525,425 _2372 Psest_2373: Psest_2373 - sulfur relay protein TusD/DsrE, at 2,525,516 to 2,525,908 _2373 Psest_2374: Psest_2374 - sulfur relay protein TusC/DsrF, at 2,525,908 to 2,526,267 _2374 Psest_2375: Psest_2375 - sulfur relay protein TusB/DsrH, at 2,526,267 to 2,526,569 _2375 Position (kb) 2524 2525 2526Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2523.802 kb on - strand, within Psest_2369at 2524.042 kb on - strand, within Psest_2370at 2524.153 kb on + strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.154 kb on - strand, within Psest_2370at 2524.156 kb on + strand, within Psest_2370at 2524.157 kb on - strand, within Psest_2370at 2524.237 kb on - strandat 2524.237 kb on - strandat 2524.290 kb on + strandat 2524.472 kb on + strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.663 kb on - strandat 2524.684 kb on - strandat 2524.706 kb on - strandat 2524.833 kb on - strand, within Psest_2372at 2524.833 kb on - strand, within Psest_2372at 2524.937 kb on + strand, within Psest_2372at 2524.938 kb on - strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.044 kb on + strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.045 kb on - strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.048 kb on + strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.049 kb on - strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.129 kb on + strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.130 kb on - strand, within Psest_2372at 2525.330 kb on - strand, within Psest_2372at 2525.330 kb on - strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.333 kb on + strand, within Psest_2372at 2525.334 kb on - strand, within Psest_2372at 2525.334 kb on - strand, within Psest_2372at 2525.369 kb on + strandat 2525.370 kb on - strandat 2525.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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2,523,802 - Psest_2369 0.77 +0.2
2,523,802 - Psest_2369 0.77 -1.2
2,523,802 - Psest_2369 0.77 -1.6
2,523,802 - Psest_2369 0.77 +0.3
2,524,042 - Psest_2370 0.41 +1.3
2,524,153 + Psest_2370 0.82 -0.1
2,524,154 - Psest_2370 0.82 +1.3
2,524,154 - Psest_2370 0.82 -0.7
2,524,156 + Psest_2370 0.83 -1.1
2,524,157 - Psest_2370 0.83 +1.3
2,524,237 - -2.1
2,524,237 - -1.3
2,524,290 + -0.8
2,524,472 + +0.5
2,524,663 - -0.3
2,524,663 - -2.0
2,524,663 - -1.3
2,524,663 - -0.0
2,524,663 - -2.5
2,524,663 - -3.9
2,524,663 - -2.6
2,524,663 - -2.4
2,524,663 - -1.0
2,524,684 - -2.9
2,524,706 - -0.9
2,524,833 - Psest_2372 0.11 -1.5
2,524,833 - Psest_2372 0.11 -1.3
2,524,937 + Psest_2372 0.27 +0.3
2,524,938 - Psest_2372 0.27 -1.4
2,525,044 + Psest_2372 0.43 -2.7
2,525,044 + Psest_2372 0.43 -2.8
2,525,044 + Psest_2372 0.43 -0.5
2,525,045 - Psest_2372 0.43 -2.3
2,525,045 - Psest_2372 0.43 -1.5
2,525,045 - Psest_2372 0.43 -1.3
2,525,045 - Psest_2372 0.43 -1.3
2,525,045 - Psest_2372 0.43 -0.0
2,525,045 - Psest_2372 0.43 +2.0
2,525,048 + Psest_2372 0.43 -3.3
2,525,048 + Psest_2372 0.43 -2.9
2,525,048 + Psest_2372 0.43 -1.0
2,525,048 + Psest_2372 0.43 -1.3
2,525,048 + Psest_2372 0.43 -2.8
2,525,048 + Psest_2372 0.43 -1.7
2,525,048 + Psest_2372 0.43 +0.7
2,525,048 + Psest_2372 0.43 -0.6
2,525,048 + Psest_2372 0.43 -1.7
2,525,048 + Psest_2372 0.43 -0.3
2,525,048 + Psest_2372 0.43 -1.4
2,525,048 + Psest_2372 0.43 -2.8
2,525,048 + Psest_2372 0.43 -1.1
2,525,048 + Psest_2372 0.43 -1.0
2,525,048 + Psest_2372 0.43 -2.3
2,525,048 + Psest_2372 0.43 -1.7
2,525,049 - Psest_2372 0.44 -0.3
2,525,049 - Psest_2372 0.44 -1.6
2,525,049 - Psest_2372 0.44 -2.0
2,525,129 + Psest_2372 0.56 -1.4
2,525,129 + Psest_2372 0.56 -3.6
2,525,129 + Psest_2372 0.56 -2.3
2,525,130 - Psest_2372 0.56 -3.4
2,525,130 - Psest_2372 0.56 -0.3
2,525,130 - Psest_2372 0.56 -1.5
2,525,130 - Psest_2372 0.56 -2.5
2,525,330 - Psest_2372 0.86 -2.3
2,525,330 - Psest_2372 0.86 +0.7
2,525,333 + Psest_2372 0.86 -1.3
2,525,333 + Psest_2372 0.86 -2.9
2,525,333 + Psest_2372 0.86 -1.3
2,525,333 + Psest_2372 0.86 -0.3
2,525,334 - Psest_2372 0.86 -3.6
2,525,334 - Psest_2372 0.86 -1.8
2,525,369 + -1.3
2,525,370 - -2.4
2,525,484 + -0.7

Or see this region's nucleotide sequence