Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0207

Experiment: Gentamicin 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0206 and Psest_0207 are separated by 78 nucleotidesPsest_0207 and Psest_0208 are separated by 1 nucleotides Psest_0206: Psest_0206 - Uncharacterized protein conserved in bacteria, at 206,341 to 207,315 _0206 Psest_0207: Psest_0207 - hypothetical protein, at 207,394 to 207,837 _0207 Psest_0208: Psest_0208 - Uncharacterized protein conserved in bacteria, at 207,839 to 209,353 _0208 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.708 kb on - strand, within Psest_0206at 206.888 kb on - strand, within Psest_0206at 207.077 kb on - strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.278 kb on - strandat 207.278 kb on - strandat 207.314 kb on - strandat 207.344 kb on - strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.397 kb on + strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.398 kb on - strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.401 kb on + strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.402 kb on - strandat 207.640 kb on + strand, within Psest_0207at 207.640 kb on + strand, within Psest_0207at 207.640 kb on + strand, within Psest_0207at 207.641 kb on - strand, within Psest_0207at 207.641 kb on - strand, within Psest_0207at 207.770 kb on - strand, within Psest_0207at 207.785 kb on - strand, within Psest_0207at 208.047 kb on - strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.283 kb on + strand, within Psest_0208at 208.416 kb on - strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml
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206,533 + Psest_0206 0.20 +1.3
206,533 + Psest_0206 0.20 +0.6
206,533 + Psest_0206 0.20 +0.7
206,533 + Psest_0206 0.20 +0.5
206,533 + Psest_0206 0.20 +1.9
206,533 + Psest_0206 0.20 +2.1
206,533 + Psest_0206 0.20 +1.0
206,533 + Psest_0206 0.20 +0.8
206,533 + Psest_0206 0.20 +0.5
206,533 + Psest_0206 0.20 +0.0
206,534 - Psest_0206 0.20 +0.6
206,534 - Psest_0206 0.20 +1.5
206,534 - Psest_0206 0.20 +1.9
206,534 - Psest_0206 0.20 +0.6
206,534 - Psest_0206 0.20 +0.8
206,534 - Psest_0206 0.20 +0.3
206,534 - Psest_0206 0.20 +0.2
206,563 + Psest_0206 0.23 -0.9
206,563 + Psest_0206 0.23 +1.0
206,662 + Psest_0206 0.33 -0.1
206,662 + Psest_0206 0.33 +0.9
206,708 - Psest_0206 0.38 -0.1
206,888 - Psest_0206 0.56 -0.7
207,077 - Psest_0206 0.75 +0.9
207,109 + Psest_0206 0.79 +1.6
207,109 + Psest_0206 0.79 -0.1
207,109 + Psest_0206 0.79 +0.3
207,109 + Psest_0206 0.79 +0.5
207,109 + Psest_0206 0.79 +1.1
207,109 + Psest_0206 0.79 -0.9
207,109 + Psest_0206 0.79 +0.7
207,109 + Psest_0206 0.79 -0.3
207,109 + Psest_0206 0.79 +0.9
207,109 + Psest_0206 0.79 +1.9
207,109 + Psest_0206 0.79 +0.9
207,109 + Psest_0206 0.79 -0.2
207,110 - Psest_0206 0.79 +1.9
207,110 - Psest_0206 0.79 -0.4
207,110 - Psest_0206 0.79 +0.3
207,110 - Psest_0206 0.79 +0.1
207,110 - Psest_0206 0.79 +0.0
207,110 - Psest_0206 0.79 -0.1
207,110 - Psest_0206 0.79 +1.9
207,110 - Psest_0206 0.79 +0.4
207,110 - Psest_0206 0.79 +0.9
207,110 - Psest_0206 0.79 +0.9
207,110 - Psest_0206 0.79 -0.3
207,110 - Psest_0206 0.79 -0.1
207,110 - Psest_0206 0.79 +0.9
207,110 - Psest_0206 0.79 -0.7
207,277 + +0.9
207,277 + +0.6
207,277 + +0.9
207,277 + +1.9
207,277 + +1.3
207,277 + +0.4
207,278 - +0.1
207,278 - +0.5
207,314 - +0.9
207,344 - +0.2
207,397 + -0.7
207,397 + -0.7
207,397 + -1.5
207,397 + -1.1
207,397 + -0.5
207,397 + +0.3
207,397 + -0.7
207,397 + -0.1
207,398 - +0.9
207,398 - +0.6
207,398 - -0.9
207,398 - +0.1
207,398 - -1.5
207,398 - +0.6
207,398 - -0.1
207,398 - +0.6
207,398 - +0.5
207,398 - -1.1
207,398 - +0.3
207,398 - +0.3
207,398 - +0.9
207,398 - -0.4
207,398 - +0.9
207,398 - -2.6
207,398 - -0.0
207,398 - +0.6
207,401 + -0.4
207,401 + -0.1
207,401 + -0.1
207,401 + -1.9
207,401 + -1.5
207,401 + -0.5
207,401 + -2.3
207,401 + -1.9
207,401 + -0.7
207,401 + +0.1
207,401 + +0.2
207,401 + +1.6
207,402 - +1.1
207,402 - +1.1
207,402 - +1.5
207,402 - -0.7
207,402 - -0.5
207,402 - -1.1
207,402 - +0.9
207,402 - +0.7
207,402 - -0.5
207,402 - +2.4
207,402 - +1.6
207,402 - +0.4
207,402 - +1.3
207,402 - -0.1
207,402 - -0.4
207,402 - -1.5
207,640 + Psest_0207 0.55 -1.7
207,640 + Psest_0207 0.55 -0.7
207,640 + Psest_0207 0.55 +1.3
207,641 - Psest_0207 0.56 -2.7
207,641 - Psest_0207 0.56 -1.1
207,770 - Psest_0207 0.85 -0.1
207,785 - Psest_0207 0.88 +0.3
208,047 - Psest_0208 0.14 -0.5
208,283 + Psest_0208 0.29 -0.7
208,283 + Psest_0208 0.29 -0.6
208,283 + Psest_0208 0.29 -1.5
208,283 + Psest_0208 0.29 -0.1
208,416 - Psest_0208 0.38 -0.2
208,679 + Psest_0208 0.55 +2.9
208,679 + Psest_0208 0.55 +0.3
208,679 + Psest_0208 0.55 -0.1
208,679 + Psest_0208 0.55 -0.1
208,679 + Psest_0208 0.55 -0.7
208,679 + Psest_0208 0.55 +1.6
208,679 + Psest_0208 0.55 +1.0
208,679 + Psest_0208 0.55 +0.9
208,679 + Psest_0208 0.55 +1.8
208,679 + Psest_0208 0.55 +0.7
208,679 + Psest_0208 0.55 +1.3
208,680 - Psest_0208 0.56 -0.9
208,680 - Psest_0208 0.56 -1.7
208,680 - Psest_0208 0.56 -1.7
208,680 - Psest_0208 0.56 -0.5
208,680 - Psest_0208 0.56 -0.3

Or see this region's nucleotide sequence