Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2012

Experiment: Gentamicin 0.0016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gentamicin 0.0016 mg/ml
2,128,615	+		Psest_2011	0.36	-1.0
2,128,615	+		Psest_2011	0.36	-3.3
2,128,616	-		Psest_2011	0.36	-2.6
2,128,616	-		Psest_2011	0.36	-0.5
2,128,617	+		Psest_2011	0.36	-3.0
2,128,617	+		Psest_2011	0.36	-3.2
2,128,617	+		Psest_2011	0.36	-3.1
2,128,617	+		Psest_2011	0.36	-2.7
2,128,617	+		Psest_2011	0.36	-2.3
2,128,617	+		Psest_2011	0.36	-0.1
2,128,617	+		Psest_2011	0.36	+1.0
2,128,617	+		Psest_2011	0.36	-1.7
2,128,617	+		Psest_2011	0.36	-4.9
2,128,617	+		Psest_2011	0.36	-2.7
2,128,617	+		Psest_2011	0.36	-0.7
2,128,617	+		Psest_2011	0.36	-2.5
2,128,617	+		Psest_2011	0.36	-3.9
2,128,617	+		Psest_2011	0.36	-2.0
2,128,617	+		Psest_2011	0.36	-2.9
2,128,617	+		Psest_2011	0.36	-1.9
2,128,617	+		Psest_2011	0.36	-2.7
2,128,618	-		Psest_2011	0.36	-1.9
2,128,618	-		Psest_2011	0.36	+0.2
2,128,714	-		Psest_2011	0.43	-1.2
2,128,757	+		Psest_2011	0.47	-0.7
2,128,758	-		Psest_2011	0.47	-2.9
2,128,771	+		Psest_2011	0.48	-2.9
2,128,771	+		Psest_2011	0.48	-1.7
2,128,771	+		Psest_2011	0.48	-3.4
2,128,830	+		Psest_2011	0.52	-1.9
2,128,831	-		Psest_2011	0.52	-0.4
2,129,246	+		Psest_2011	0.84	-0.9
2,129,370	+				-2.7
2,129,370	+				-2.0
2,129,371	-				-2.0
2,129,376	+				-0.9
2,129,377	-				-3.2
2,129,410	+				-2.6
2,129,411	-				-0.7
2,129,411	-				-3.3
2,129,661	-				-2.6
2,129,671	+				-0.5
2,129,671	+				+1.7
2,129,672	-				+0.6
2,129,672	-				+1.2
2,129,732	+		Psest_2012	0.14	+0.2
2,129,732	+		Psest_2012	0.14	+1.0
2,129,733	-		Psest_2012	0.14	-0.3
2,129,733	-		Psest_2012	0.14	+0.6
2,129,857	+		Psest_2012	0.25	-0.7
2,129,858	-		Psest_2012	0.25	+0.1
2,130,228	+		Psest_2012	0.59	-0.2
2,130,228	+		Psest_2012	0.59	-0.6
2,130,228	+		Psest_2012	0.59	-1.4
2,130,228	+		Psest_2012	0.59	+0.3
2,130,267	+		Psest_2012	0.62	-0.8
2,130,267	+		Psest_2012	0.62	-1.2
2,130,267	+		Psest_2012	0.62	-0.7
2,130,267	+		Psest_2012	0.62	-0.1
2,130,267	+		Psest_2012	0.62	+0.5
2,130,267	+		Psest_2012	0.62	-1.3
2,130,379	+		Psest_2012	0.73	+1.2
2,130,379	+		Psest_2012	0.73	-1.0
2,130,380	-		Psest_2012	0.73	-0.7
2,130,380	-		Psest_2012	0.73	+1.4
2,130,505	+		Psest_2012	0.84	-0.0
2,130,505	+		Psest_2012	0.84	+0.2
2,130,505	+		Psest_2012	0.84	+0.7
2,130,506	-		Psest_2012	0.84	+0.8
2,130,564	+		Psest_2012	0.89	+0.1
2,130,597	+				+1.0
2,130,783	+				-2.6
2,130,784	-				+0.3
2,130,784	-				+1.5
2,130,821	-				+0.7
2,130,831	-				+1.3
2,130,996	-		Psest_2013	0.15	-0.5
2,131,107	+		Psest_2013	0.21	-2.1
2,131,107	+		Psest_2013	0.21	+0.5
2,131,108	-		Psest_2013	0.21	-0.1
2,131,169	-		Psest_2013	0.24	+0.8
2,131,245	+		Psest_2013	0.28	-2.8
2,131,458	+		Psest_2013	0.38	-0.7
2,131,458	+		Psest_2013	0.38	-0.8
2,131,458	+		Psest_2013	0.38	-0.3
2,131,459	-		Psest_2013	0.38	-0.6
2,131,459	-		Psest_2013	0.38	+1.1
2,131,459	-		Psest_2013	0.38	-0.1
2,131,459	-		Psest_2013	0.38	+1.8
2,131,506	+		Psest_2013	0.41	-0.3
2,131,507	-		Psest_2013	0.41	-3.8
2,131,524	+		Psest_2013	0.42	+1.1
2,131,524	+		Psest_2013	0.42	-0.2
2,131,525	-		Psest_2013	0.42	-0.1
2,131,525	-		Psest_2013	0.42	+0.8
2,131,525	-		Psest_2013	0.42	+0.6
2,131,525	-		Psest_2013	0.42	-0.1
2,131,525	-		Psest_2013	0.42	-1.4
2,131,525	-		Psest_2013	0.42	+0.9
2,131,525	-		Psest_2013	0.42	-0.4
2,131,530	+		Psest_2013	0.42	-2.0
2,131,530	+		Psest_2013	0.42	-0.6
2,131,530	+		Psest_2013	0.42	-0.3
2,131,530	+		Psest_2013	0.42	-0.4
2,131,531	-		Psest_2013	0.42	+1.9
2,131,531	-		Psest_2013	0.42	-0.2
2,131,531	-		Psest_2013	0.42	-1.4
2,131,536	+		Psest_2013	0.42	+0.9
2,131,537	-		Psest_2013	0.42	-0.3
2,131,537	-		Psest_2013	0.42	-0.4
2,131,537	-		Psest_2013	0.42	-0.9
2,131,674	-		Psest_2013	0.49	+0.1
2,131,674	-		Psest_2013	0.49	+0.1