Experiment: Gentamicin 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1512 and Psest_1513 are separated by 33 nucleotides Psest_1513 and Psest_1514 are separated by 21 nucleotides Psest_1514 and Psest_1515 are separated by 227 nucleotides
Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727
_1512
Psest_1513: Psest_1513 - Peroxiredoxin, at 1,612,761 to 1,613,234
_1513
Psest_1514: Psest_1514 - Glycine cleavage system regulatory protein, at 1,613,256 to 1,613,816
_1514
Psest_1515: Psest_1515 - dihydrodipicolinate synthase, at 1,614,044 to 1,614,922
_1515
Position (kb)
1613
1614 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.284 kb on + strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.285 kb on - strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.362 kb on + strand, within Psest_1512 at 1612.363 kb on - strand, within Psest_1512 at 1612.363 kb on - strand, within Psest_1512 at 1612.411 kb on - strand, within Psest_1512 at 1612.411 kb on - strand, within Psest_1512 at 1612.488 kb on + strand, within Psest_1512 at 1612.489 kb on - strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.588 kb on + strand, within Psest_1512 at 1612.892 kb on - strand, within Psest_1513 at 1612.892 kb on - strand, within Psest_1513 at 1612.903 kb on + strand, within Psest_1513 at 1612.904 kb on - strand, within Psest_1513 at 1613.100 kb on - strand, within Psest_1513 at 1613.131 kb on + strand, within Psest_1513 at 1613.131 kb on + strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.132 kb on - strand, within Psest_1513 at 1613.417 kb on - strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.512 kb on + strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.513 kb on - strand, within Psest_1514 at 1613.521 kb on + strand, within Psest_1514 at 1613.522 kb on - strand, within Psest_1514 at 1614.002 kb on + strand at 1614.002 kb on + strand at 1614.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.0016 mg/ml remove 1,612,284 + Psest_1512 0.59 +0.4 1,612,284 + Psest_1512 0.59 -0.5 1,612,284 + Psest_1512 0.59 -0.2 1,612,284 + Psest_1512 0.59 +1.6 1,612,284 + Psest_1512 0.59 -0.3 1,612,284 + Psest_1512 0.59 -0.9 1,612,284 + Psest_1512 0.59 -1.0 1,612,284 + Psest_1512 0.59 -1.5 1,612,284 + Psest_1512 0.59 +0.7 1,612,285 - Psest_1512 0.59 -2.6 1,612,285 - Psest_1512 0.59 -0.9 1,612,285 - Psest_1512 0.59 -3.4 1,612,285 - Psest_1512 0.59 -2.9 1,612,362 + Psest_1512 0.66 -1.0 1,612,362 + Psest_1512 0.66 +0.0 1,612,362 + Psest_1512 0.66 +0.7 1,612,362 + Psest_1512 0.66 -1.2 1,612,363 - Psest_1512 0.66 -0.4 1,612,363 - Psest_1512 0.66 +0.2 1,612,411 - Psest_1512 0.71 -0.2 1,612,411 - Psest_1512 0.71 -1.9 1,612,488 + Psest_1512 0.78 +1.3 1,612,489 - Psest_1512 0.78 -3.0 1,612,588 + Psest_1512 0.87 -1.6 1,612,588 + Psest_1512 0.87 +0.4 1,612,588 + Psest_1512 0.87 +0.7 1,612,588 + Psest_1512 0.87 -1.5 1,612,588 + Psest_1512 0.87 -0.1 1,612,892 - Psest_1513 0.28 +1.5 1,612,892 - Psest_1513 0.28 +0.2 1,612,903 + Psest_1513 0.30 -1.1 1,612,904 - Psest_1513 0.30 +1.5 1,613,100 - Psest_1513 0.72 -1.2 1,613,131 + Psest_1513 0.78 +0.3 1,613,131 + Psest_1513 0.78 -3.2 1,613,132 - Psest_1513 0.78 +0.6 1,613,132 - Psest_1513 0.78 +0.5 1,613,132 - Psest_1513 0.78 +0.0 1,613,132 - Psest_1513 0.78 -1.1 1,613,132 - Psest_1513 0.78 -0.2 1,613,132 - Psest_1513 0.78 -0.1 1,613,132 - Psest_1513 0.78 -0.0 1,613,132 - Psest_1513 0.78 +0.1 1,613,132 - Psest_1513 0.78 +0.4 1,613,132 - Psest_1513 0.78 -0.8 1,613,132 - Psest_1513 0.78 +0.1 1,613,132 - Psest_1513 0.78 +0.7 1,613,417 - Psest_1514 0.29 -2.6 1,613,512 + Psest_1514 0.46 -1.7 1,613,512 + Psest_1514 0.46 -1.6 1,613,512 + Psest_1514 0.46 -1.4 1,613,512 + Psest_1514 0.46 -1.9 1,613,512 + Psest_1514 0.46 -0.4 1,613,513 - Psest_1514 0.46 -0.8 1,613,513 - Psest_1514 0.46 -1.1 1,613,513 - Psest_1514 0.46 -2.1 1,613,513 - Psest_1514 0.46 -1.3 1,613,513 - Psest_1514 0.46 -1.6 1,613,521 + Psest_1514 0.47 -3.6 1,613,522 - Psest_1514 0.47 -0.8 1,614,002 + -0.7 1,614,002 + -0.6 1,614,002 + -1.3
Or see this region's nucleotide sequence