Strain Fitness in Shewanella oneidensis MR-1 around SO4149

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
4,308,642	-		SO4148	0.29	-0.5
4,308,699	-		SO4148	0.33	+0.0
4,308,849	-		SO4148	0.44	+1.1
4,308,851	+		SO4148	0.44	+0.1
4,308,896	+		SO4148	0.48	+0.8
4,309,056	-		SO4148	0.60	-0.3
4,309,163	+		SO4148	0.68	+0.6
4,309,172	+		SO4148	0.69	-0.3
4,309,190	-		SO4148	0.70	-0.0
4,309,190	-		SO4148	0.70	+0.2
4,309,346	-		SO4148	0.82	+0.2
4,309,572	+				+0.5
4,309,573	-				-0.2
4,309,717	+				+0.4
4,309,748	+				+0.8
4,309,748	+				+0.1
4,309,756	-				+0.3
4,309,756	-				-0.5
4,309,756	-				-0.2
4,309,800	-				+0.2
4,309,817	-				+0.1
4,309,923	-				-0.4
4,310,032	-				-0.3
4,310,057	+				+0.0
4,310,067	+				+0.1
4,310,067	+				+0.3
4,310,067	+				+0.4
4,310,067	+				-0.4
4,310,075	-				+0.8
4,310,187	+				+1.0
4,310,195	-				+0.2
4,310,198	-				-0.3
4,310,205	-				+0.1
4,310,205	-				+2.0
4,310,205	-				+0.7
4,310,300	-				+0.4
4,310,306	-				+0.1
4,310,306	-				+0.8
4,310,306	-				+0.4
4,310,306	-				+0.6
4,310,306	-				+0.7
4,310,317	-				+0.6
4,310,325	-				-0.2
4,310,426	-				+0.8
4,310,483	+				+0.8
4,310,485	+				+0.4
4,310,551	-				+0.2
4,310,575	+				+0.1
4,310,641	-				-0.1
4,310,648	-				+1.6
4,310,714	+				+0.2
4,310,729	-				+0.6
4,310,772	+				+0.4
4,310,780	-				-1.2
4,310,834	-				+0.7
4,310,834	-				-0.2
4,310,910	-				+0.1
4,310,956	-				+0.9
4,310,990	-				+0.1
4,310,996	+				+0.2
4,311,037	+				+1.1
4,311,072	+				+0.1
4,311,073	-				+0.1
4,311,080	-				+0.9
4,311,080	-				+0.2
4,311,080	-				+0.3
4,311,240	+		SO4149	0.11	+0.5
4,311,245	+		SO4149	0.11	+0.4
4,311,316	+		SO4149	0.11	+0.6
4,311,414	+		SO4149	0.12	-0.4
4,311,421	-		SO4149	0.12	+0.6
4,311,422	-		SO4149	0.12	+0.8
4,311,457	-		SO4149	0.12	+0.7
4,311,548	+		SO4149	0.13	+0.8
4,311,561	-		SO4149	0.13	-0.4
4,311,665	-		SO4149	0.14	+0.5
4,311,673	+		SO4149	0.14	+1.0
4,311,673	-		SO4149	0.14	+0.1
4,311,673	-		SO4149	0.14	-0.3
4,311,681	-		SO4149	0.14	+0.0
4,311,831	+		SO4149	0.15	+0.4
4,311,831	+		SO4149	0.15	+0.6
4,311,940	-		SO4149	0.16	+0.3
4,311,991	+		SO4149	0.16	-0.5
4,312,067	-		SO4149	0.16	+1.4
4,312,072	-		SO4149	0.16	+0.0
4,312,107	-		SO4149	0.17	-0.4
4,312,176	+		SO4149	0.17	+0.6
4,312,176	+		SO4149	0.17	+0.4
4,312,184	-		SO4149	0.17	+0.3
4,312,233	+		SO4149	0.17	+0.9
4,312,241	-		SO4149	0.18	+1.4
4,312,243	+		SO4149	0.18	-0.0
4,312,280	-		SO4149	0.18	+0.5
4,312,374	+		SO4149	0.18	+0.4
4,312,562	+		SO4149	0.20	-0.7
4,312,572	+		SO4149	0.20	-0.0
4,312,580	-		SO4149	0.20	+0.5
4,312,582	+		SO4149	0.20	+1.2
4,312,670	-		SO4149	0.20	+0.2
4,312,683	+		SO4149	0.20	+0.4
4,312,751	+		SO4149	0.21	+1.1
4,312,751	+		SO4149	0.21	+1.4
4,312,759	-		SO4149	0.21	+0.9
4,312,759	-		SO4149	0.21	+0.6
4,312,810	-		SO4149	0.21	+0.5
4,312,904	+		SO4149	0.22	+0.7
4,312,966	+		SO4149	0.22	+0.6
4,312,974	-		SO4149	0.22	+0.5
4,312,974	-		SO4149	0.22	+0.8
4,313,002	-		SO4149	0.23	+0.8
4,313,032	-		SO4149	0.23	-0.6
4,313,078	+		SO4149	0.23	+0.0
4,313,086	-		SO4149	0.23	+0.4
4,313,172	-		SO4149	0.24	+1.6
4,313,261	+		SO4149	0.24	+0.5
4,313,280	-		SO4149	0.24	+0.2
4,313,290	-		SO4149	0.24	+0.1
4,313,427	+		SO4149	0.25	-0.0
4,313,434	+		SO4149	0.25	+0.7
4,313,563	+		SO4149	0.26	+0.2
4,313,584	+		SO4149	0.26	+1.1
4,313,584	+		SO4149	0.26	+0.4
4,313,584	+		SO4149	0.26	+0.5
4,313,594	+		SO4149	0.27	+0.8
4,313,602	-		SO4149	0.27	+0.0
4,313,602	-		SO4149	0.27	+0.4
4,313,623	+		SO4149	0.27	+1.0
4,313,647	+		SO4149	0.27	+0.8
4,313,666	+		SO4149	0.27	+0.0
4,313,794	-		SO4149	0.28	+0.1
4,313,913	-		SO4149	0.29	-0.3
4,313,919	+		SO4149	0.29	+0.8
4,313,926	+		SO4149	0.29	+1.0
4,313,926	+		SO4149	0.29	+0.9
4,313,927	-		SO4149	0.29	-0.5
4,313,961	-		SO4149	0.29	+0.1
4,313,967	-		SO4149	0.29	+0.8
4,313,985	-		SO4149	0.29	+1.9
4,314,011	-		SO4149	0.29	+0.7
4,314,030	-		SO4149	0.29	+1.1
4,314,030	-		SO4149	0.29	-0.3
4,314,034	+		SO4149	0.29	+1.1
4,314,070	+		SO4149	0.30	+0.7
4,314,071	+		SO4149	0.30	+1.1
4,314,078	-		SO4149	0.30	+1.1
4,314,107	-		SO4149	0.30	-0.6
4,314,107	-		SO4149	0.30	+1.2
4,314,129	+		SO4149	0.30	+0.7
4,314,130	-		SO4149	0.30	+0.1
4,314,137	-		SO4149	0.30	+0.8
4,314,148	-		SO4149	0.30	+1.0
4,314,218	+		SO4149	0.31	+0.5
4,314,221	-		SO4149	0.31	+0.1
4,314,327	-		SO4149	0.31	+1.5
4,314,330	+		SO4149	0.31	+0.2
4,314,408	+		SO4149	0.32	+0.2
4,314,408	+		SO4149	0.32	+0.3
4,314,416	-		SO4149	0.32	+0.6
4,314,416	-		SO4149	0.32	+0.0
4,314,510	+		SO4149	0.33	+0.1
4,314,518	-		SO4149	0.33	+0.3
4,314,528	+		SO4149	0.33	+0.8
4,314,560	-		SO4149	0.33	+0.2
4,314,560	-		SO4149	0.33	+0.2
4,314,560	-		SO4149	0.33	+0.5
4,314,578	+		SO4149	0.33	+0.8
4,314,586	-		SO4149	0.33	+2.4
4,314,586	-		SO4149	0.33	+0.6
4,314,646	+		SO4149	0.33	+0.8
4,314,654	-		SO4149	0.34	+0.1
4,314,706	+		SO4149	0.34	-0.4
4,314,707	+		SO4149	0.34	-0.6
4,314,714	-		SO4149	0.34	+0.2
4,314,714	-		SO4149	0.34	+0.5
4,314,987	-		SO4149	0.36	+0.4
4,314,987	-		SO4149	0.36	+1.4
4,315,126	+		SO4149	0.37	+0.6
4,315,126	+		SO4149	0.37	+0.7
4,315,189	+		SO4149	0.37	-0.0
4,315,212	+		SO4149	0.37	+0.4
4,315,214	+		SO4149	0.37	-0.2
4,315,222	-		SO4149	0.37	+0.6
4,315,224	+		SO4149	0.37	-0.0
4,315,238	+		SO4149	0.37	+0.6
4,315,239	+		SO4149	0.37	+1.2
4,315,246	-		SO4149	0.37	+0.2
4,315,246	-		SO4149	0.37	+0.2
4,315,246	-		SO4149	0.37	-0.0
4,315,246	-		SO4149	0.37	+0.5
4,315,357	+		SO4149	0.38	+1.1
4,315,363	-		SO4149	0.38	-0.3
4,315,380	+		SO4149	0.38	-0.7
4,315,381	+		SO4149	0.38	+1.0
4,315,398	+		SO4149	0.38	+0.4
4,315,406	-		SO4149	0.39	+0.6
4,315,408	+		SO4149	0.39	+0.4
4,315,454	+		SO4149	0.39	+0.6
4,315,462	-		SO4149	0.39	+0.8
4,315,536	-		SO4149	0.39	+0.4
4,315,570	+		SO4149	0.40	+1.0
4,315,581	+		SO4149	0.40	+0.5
4,315,581	+		SO4149	0.40	+0.4
4,315,599	-		SO4149	0.40	+0.3
4,315,622	+		SO4149	0.40	+0.8
4,315,779	+		SO4149	0.41	+0.1
4,315,787	-		SO4149	0.41	+0.1
4,315,787	-		SO4149	0.41	+0.7
4,315,794	+		SO4149	0.41	+0.8
4,315,856	-		SO4149	0.42	+0.5
4,315,867	+		SO4149	0.42	+0.2
4,315,881	-		SO4149	0.42	+0.7
4,315,925	-		SO4149	0.42	+1.5
4,316,012	-		SO4149	0.43	+1.4
4,316,105	+		SO4149	0.43	+0.6
4,316,147	+		SO4149	0.43	+0.6
4,316,147	+		SO4149	0.43	+0.9
4,316,152	+		SO4149	0.43	+0.4
4,316,186	+		SO4149	0.44	+1.4
4,316,354	+		SO4149	0.45	+0.5
4,316,362	-				+2.0
4,316,382	+		SO4149	0.45	+0.2
4,316,390	+		SO4149	0.45	-0.5
4,316,392	+		SO4149	0.45	+0.5
4,316,392	+		SO4149	0.45	+1.1
4,316,392	+		SO4149	0.45	+0.4
4,316,397	+		SO4149	0.45	+0.5
4,316,399	+		SO4149	0.45	-0.3
4,316,400	-		SO4149	0.45	+0.8
4,316,405	-		SO4149	0.45	+0.8
4,316,405	-		SO4149	0.45	-0.1
4,316,405	-		SO4149	0.45	-0.2
4,316,412	-		SO4149	0.45	+0.7
4,316,419	-		SO4149	0.45	+0.1
4,316,433	+		SO4149	0.45	+1.0
4,316,474	-		SO4149	0.46	+0.7
4,316,497	-		SO4149	0.46	-0.6
4,316,563	+		SO4149	0.46	+0.4
4,316,608	+		SO4149	0.47	+0.5
4,316,632	+		SO4149	0.47	+0.5
4,316,734	-		SO4149	0.47	+1.0
4,316,753	-		SO4149	0.47	+1.9
4,316,759	+		SO4149	0.48	+0.8
4,316,785	-		SO4149	0.48	+0.4
4,316,802	-		SO4149	0.48	+0.4
4,316,891	-		SO4149	0.48	+0.7
4,316,932	-		SO4149	0.49	+2.4
4,316,942	+		SO4149	0.49	+0.2
4,316,993	-		SO4149	0.49	+0.4
4,317,085	-		SO4149	0.50	+0.8
4,317,102	-		SO4149	0.50	+1.4
4,317,115	-		SO4149	0.50	+0.3
4,317,128	+		SO4149	0.50	+0.6
4,317,147	+		SO4149	0.50	+0.0
4,317,170	+		SO4149	0.50	-0.0
4,317,183	+		SO4149	0.50	+1.5
4,317,250	+		SO4149	0.51	+0.1
4,317,267	+		SO4149	0.51	+0.4
4,317,292	-		SO4149	0.51	+0.6
4,317,292	-		SO4149	0.51	+0.7
4,317,292	-		SO4149	0.51	+1.8
4,317,308	+		SO4149	0.51	+2.1
4,317,316	-		SO4149	0.51	-0.9
4,317,316	-		SO4149	0.51	+0.2
4,317,367	+		SO4149	0.52	-0.7
4,317,662	+		SO4149	0.54	+0.2
4,317,662	+		SO4149	0.54	+1.1
4,317,768	-		SO4149	0.54	+1.3
4,317,783	-		SO4149	0.54	+0.3
4,317,807	+		SO4149	0.54	+0.8
4,317,827	+		SO4149	0.55	+0.4
4,317,853	-		SO4149	0.55	+0.5
4,317,885	+		SO4149	0.55	+1.0
4,317,919	-		SO4149	0.55	+0.7
4,317,982	-		SO4149	0.56	+1.4
4,318,044	-		SO4149	0.56	+0.2
4,318,080	+		SO4149	0.56	+1.3
4,318,108	-		SO4149	0.56	+1.3
4,318,130	+		SO4149	0.57	-0.3
4,318,145	+		SO4149	0.57	-2.2
4,318,146	+		SO4149	0.57	+0.2
4,318,161	+		SO4149	0.57	+1.5
4,318,166	+		SO4149	0.57	+0.7
4,318,174	-				+3.4
4,318,174	-		SO4149	0.57	+0.6
4,318,193	+		SO4149	0.57	+0.1
4,318,284	+		SO4149	0.58	-0.3
4,318,291	+		SO4149	0.58	+1.4
4,318,350	-		SO4149	0.58	+0.7
4,318,412	+		SO4149	0.58	+0.3
4,318,453	-		SO4149	0.59	+0.5
4,318,453	-		SO4149	0.59	-0.0
4,318,545	+		SO4149	0.59	+0.6
4,318,596	+		SO4149	0.60	+0.1
4,318,604	-		SO4149	0.60	+1.2
4,318,604	-		SO4149	0.60	-0.1
4,318,604	-		SO4149	0.60	+0.3
4,318,710	-		SO4149	0.60	+0.6
4,318,725	-		SO4149	0.61	-0.1
4,318,754	+		SO4149	0.61	+0.2
4,318,869	+		SO4149	0.62	+1.6
4,318,870	-		SO4149	0.62	+1.6
4,318,924	+		SO4149	0.62	+0.9
4,318,944	-		SO4149	0.62	+0.4
4,318,991	+		SO4149	0.62	-0.0
4,319,012	+		SO4149	0.62	-0.4
4,319,012	+		SO4149	0.62	+0.1
4,319,067	+		SO4149	0.63	-0.6
4,319,071	+		SO4149	0.63	+0.8
4,319,161	+		SO4149	0.63	+0.4
4,319,169	-		SO4149	0.64	+0.7
4,319,172	+		SO4149	0.64	+0.7
4,319,172	+		SO4149	0.64	+1.9
4,319,172	+		SO4149	0.64	+0.9
4,319,172	+		SO4149	0.64	+1.0
4,319,180	-				-0.2
4,319,180	-				-0.4
4,319,218	+				+0.0
4,319,238	-				+0.9
4,319,324	+				+0.0
4,319,325	-				+0.4
4,319,327	-				+1.4
4,319,332	-				+0.3
4,319,332	-				+1.0
4,319,339	-				+1.6
4,319,375	+				+1.0
4,319,485	-				+1.6
4,319,485	-				+0.7
4,319,500	+				+0.5
4,319,500	+				+0.8
4,319,508	-				+1.9
4,319,508	-				+0.6
4,319,508	-				-0.2
4,319,508	-				+0.1
4,319,531	-				-0.3
4,319,536	-				+0.7
4,319,574	+				+0.9
4,319,632	-				+0.8
4,319,687	+				+0.3
4,319,695	-				+1.7
4,319,759	-				+1.2
4,319,786	+				+0.1
4,319,869	+				+0.1
4,319,905	+				+1.5
4,319,908	-				+0.8
4,320,024	-				+0.4
4,320,026	+				+0.8
4,320,039	+				+0.7
4,320,039	+				-0.2
4,320,039	+				+1.0
4,320,047	-				+0.3
4,320,108	+				+1.1
4,320,108	+				+1.4
4,320,108	+				+0.8
4,320,116	-				+0.2
4,320,158	-				+1.1
4,320,160	-				-0.0
4,320,183	+				+1.1
4,320,234	+				+0.2
4,320,234	+				-0.8
4,320,242	-				+0.7
4,320,264	+				+0.9
4,320,282	-				+0.1
4,320,519	+				-1.0
4,320,603	+				+1.7
4,320,610	-				+0.2
4,320,615	-				+0.9
4,320,617	-				-1.5
4,320,635	+				+1.3
4,320,660	+				+0.6
4,320,678	-				+0.7
4,320,801	+				+0.7
4,320,833	+				+1.4
4,320,841	-				+0.9
4,320,841	-				-0.1
4,320,846	-				+0.6
4,320,846	-				+0.8
4,320,899	-				-0.3
4,320,924	+				+0.7
4,321,023	-				+0.6
4,321,042	+				+1.2
4,321,127	-				+1.5
4,321,184	-				+0.5
4,321,228	+				+0.0
4,321,236	-				+0.3
4,321,236	-				+1.4
4,321,236	-				+0.1
4,321,311	+				+0.4
4,321,321	+				+0.4
4,321,412	+				+0.2
4,321,511	-				+0.8
4,321,573	-				+0.8
4,321,576	+				+0.4
4,321,585	+				+1.8
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4,325,213	-		SO4150	0.33	+0.9
4,325,348	-		SO4150	0.43	+0.3
4,325,539	+		SO4150	0.58	+1.1
4,325,643	+		SO4150	0.66	-0.4