Strain Fitness in Shewanella oneidensis MR-1 around SO1392

Experiment: Tetracycline 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.0004 mg/ml
1,448,741	-		SO1391	0.35	+0.2
1,448,759	-		SO1391	0.36	-0.9
1,448,777	-		SO1391	0.37	+0.2
1,448,795	-		SO1391	0.39	+0.2
1,448,923	+		SO1391	0.48	-0.0
1,448,923	+		SO1391	0.48	+0.3
1,448,948	-		SO1391	0.50	+0.5
1,448,952	+		SO1391	0.50	-0.1
1,448,957	+		SO1391	0.51	+0.6
1,448,965	-		SO1391	0.51	+0.8
1,449,039	-		SO1391	0.57	+0.4
1,449,051	-		SO1391	0.58	-0.5
1,449,051	-		SO1391	0.58	+0.4
1,449,056	+		SO1391	0.58	+1.0
1,449,086	-		SO1391	0.61	+0.5
1,449,099	-		SO1391	0.61	+0.3
1,449,160	+		SO1391	0.66	+0.6
1,449,168	-		SO1391	0.67	+2.1
1,449,291	+		SO1391	0.76	+0.6
1,449,299	-		SO1391	0.77	-0.3
1,449,505	-				+0.1
1,449,531	-				-1.3
1,449,553	+				+0.0
1,449,589	+				-0.4
1,449,589	-				+0.9
1,449,798	+		SO1392	0.22	-0.0
1,449,856	+		SO1392	0.34	-0.3
1,449,901	+		SO1392	0.44	-0.3
1,449,901	+		SO1392	0.44	+0.2
1,449,901	+		SO1392	0.44	-0.2
1,449,909	-		SO1392	0.45	-0.0
1,449,909	-		SO1392	0.45	-0.1
1,449,909	-		SO1392	0.45	-0.5
1,449,909	-		SO1392	0.45	-0.3
1,449,909	-		SO1392	0.45	-0.4
1,449,909	-		SO1392	0.45	-0.1
1,449,909	-		SO1392	0.45	-1.2
1,449,909	-		SO1392	0.45	-0.6
1,450,116	+		SO1392	0.88	-0.6
1,450,124	-				-0.0
1,450,124	-				+0.2
1,450,236	-				+1.5
1,450,289	-				-0.4
1,450,463	-				+0.3
1,450,471	-				+0.6
1,450,628	+		SO1393	0.29	+0.2
1,450,844	+		SO1393	0.64	-0.1
1,450,844	+		SO1393	0.64	+0.6
1,450,844	+		SO1393	0.64	+1.2
1,450,844	+		SO1393	0.64	-0.1
1,450,852	-		SO1393	0.66	-0.5
1,450,852	-		SO1393	0.66	-0.2
1,450,907	-		SO1393	0.75	+0.7
1,450,907	-		SO1393	0.75	-0.1
1,450,996	-		SO1393	0.89	-0.3
1,451,007	+				+0.4