Strain Fitness in Shewanella oneidensis MR-1 around SO4366

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
4,560,770	+		SO4365	0.31	-0.3
4,560,786	-		SO4365	0.32	-0.1
4,560,858	-		SO4365	0.40	+0.3
4,560,909	-		SO4365	0.46	-0.5
4,560,953	-		SO4365	0.51	-1.2
4,560,981	-		SO4365	0.54	-0.1
4,561,094	+		SO4365	0.67	+0.4
4,561,094	+		SO4365	0.67	+0.2
4,561,094	+		SO4365	0.67	+0.4
4,561,102	-		SO4365	0.68	+0.1
4,561,106	+		SO4365	0.68	+0.0
4,561,106	+		SO4365	0.68	-0.1
4,561,106	+		SO4365	0.68	+0.1
4,561,106	+		SO4365	0.68	+0.2
4,561,106	+		SO4365	0.68	-0.0
4,561,132	+		SO4365	0.71	-0.1
4,561,132	+		SO4365	0.71	+0.5
4,561,132	+		SO4365	0.71	+0.0
4,561,142	+		SO4365	0.72	+0.9
4,561,150	-		SO4365	0.73	-0.4
4,561,150	-		SO4365	0.73	+0.5
4,561,150	-		SO4365	0.73	+0.1
4,561,152	+		SO4365	0.73	+0.4
4,561,152	+		SO4365	0.73	-0.6
4,561,153	+		SO4365	0.73	-0.7
4,561,161	-		SO4365	0.74	-0.0
4,561,288	+		SO4365	0.89	+0.6
4,561,296	-		SO4365	0.89	+0.6
4,561,296	-		SO4365	0.89	-0.6
4,561,332	-				-0.2
4,561,359	+				-0.4
4,561,459	+				+0.9
4,561,478	+				-0.7
4,561,492	+				+0.1
4,561,511	-				-0.2
4,561,616	-				-0.3
4,561,734	+				+0.3
4,561,742	-				-0.3
4,561,760	+				-0.1
4,561,791	-				-0.4
4,562,021	+		SO4366	0.35	-1.4
4,562,034	+		SO4366	0.37	-0.6
4,562,034	+		SO4366	0.37	-0.6
4,562,034	+		SO4366	0.37	-0.2
4,562,034	+		SO4366	0.37	-0.8
4,562,034	+		SO4366	0.37	+1.0
4,562,042	-		SO4366	0.38	-0.2
4,562,042	-		SO4366	0.38	-2.4
4,562,042	-		SO4366	0.38	-0.3
4,562,071	+		SO4366	0.42	-0.7
4,562,085	+		SO4366	0.44	-1.1
4,562,101	+		SO4366	0.46	-0.5
4,562,109	-		SO4366	0.47	-0.2
4,562,109	-		SO4366	0.47	-0.7
4,562,115	-		SO4366	0.48	-0.5
4,562,175	+		SO4366	0.56	-0.6
4,562,175	+		SO4366	0.56	+0.9
4,562,305	+		SO4366	0.74	-0.7
4,562,313	-		SO4366	0.75	-0.7
4,562,338	+		SO4366	0.78	+0.3
4,562,390	+		SO4366	0.85	+0.6
4,562,408	-		SO4366	0.87	-0.1
4,562,408	-		SO4366	0.87	-0.2
4,562,418	-		SO4366	0.89	+0.1
4,562,459	-				+0.5
4,562,471	-				+0.1
4,562,484	+				-0.3
4,562,492	-				+0.5
4,562,492	-				+0.9
4,562,503	-				-0.1
4,562,508	+				-0.5
4,562,520	-				+0.2
4,562,522	+				+0.1
4,562,522	+				+0.8
4,562,522	+				+0.7
4,562,522	+				+0.2
4,562,522	+				+0.1
4,562,522	+				+0.2
4,562,530	-				-2.3
4,562,530	-				-0.3
4,562,530	-				-0.5
4,562,530	-				+0.3
4,562,541	-				+0.1
4,562,567	+				+0.5
4,562,611	+		SO4367	0.14	-0.1
4,562,652	-		SO4367	0.19	+0.0
4,562,674	+		SO4367	0.21	+0.1
4,562,679	+		SO4367	0.22	-0.3
4,562,692	-		SO4367	0.23	-0.7
4,562,755	-		SO4367	0.31	-0.3
4,562,816	+		SO4367	0.38	-0.5
4,562,843	-		SO4367	0.41	-0.0
4,562,926	+		SO4367	0.51	+0.0
4,562,926	+		SO4367	0.51	-0.5
4,562,928	+		SO4367	0.51	+0.7
4,562,934	-		SO4367	0.52	-0.6
4,562,936	-		SO4367	0.52	-1.0
4,562,936	-		SO4367	0.52	+0.5
4,562,986	+		SO4367	0.58	+0.0
4,563,002	-		SO4367	0.60	-0.4
4,563,183	+		SO4367	0.81	+0.0
4,563,228	+		SO4367	0.86	+0.2
4,563,246	+		SO4367	0.88	-0.0
4,563,451	-		SO4368	0.48	-0.3