Strain Fitness in Shewanella oneidensis MR-1 around SO1986

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
2,088,102	-				-0.2
2,088,102	-				-1.2
2,088,241	+				-0.2
2,088,249	-				-0.2
2,088,266	+				-0.3
2,088,266	+				-0.2
2,088,274	-				+0.3
2,088,276	-				-0.2
2,088,295	+				-0.4
2,088,301	-				-0.1
2,088,301	-				-0.2
2,088,393	+				+0.2
2,088,402	-				+0.1
2,088,430	+				+0.0
2,088,430	+				-0.3
2,088,436	+				-0.2
2,088,436	+				-0.3
2,088,446	-				+0.5
2,088,446	-				-0.1
2,088,446	-				-0.4
2,088,488	-		SO1985	0.11	-0.8
2,088,507	+		SO1985	0.13	-0.5
2,088,538	-		SO1985	0.18	-1.2
2,088,614	+		SO1985	0.29	-0.7
2,088,615	+		SO1985	0.29	-0.1
2,088,617	-		SO1985	0.29	-0.4
2,088,617	-		SO1985	0.29	-1.2
2,088,622	-		SO1985	0.30	+0.8
2,088,623	+		SO1985	0.30	+0.4
2,088,631	-		SO1985	0.31	-1.5
2,088,631	-		SO1985	0.31	-0.4
2,088,651	-		SO1985	0.34	-0.2
2,088,720	-		SO1985	0.44	-0.8
2,088,811	-		SO1985	0.57	+0.3
2,088,831	-		SO1985	0.60	+0.2
2,088,880	-		SO1985	0.67	-1.1
2,088,904	-		SO1985	0.71	+1.5
2,088,926	-		SO1985	0.74	-0.0
2,088,937	-		SO1985	0.75	-0.7
2,088,937	-		SO1985	0.75	-1.6
2,089,030	+		SO1985	0.89	-0.3
2,089,038	-				-0.7
2,089,065	-				-0.2
2,089,200	-		SO1986	0.15	-0.0
2,089,246	-		SO1986	0.22	-0.3
2,089,256	-		SO1986	0.23	-0.3
2,089,263	-		SO1986	0.25	-0.5
2,089,263	-		SO1986	0.25	+0.3
2,089,263	-		SO1986	0.25	+0.1
2,089,263	-		SO1986	0.25	-0.4
2,089,388	-		SO1986	0.43	+0.2
2,089,421	+		SO1986	0.48	+0.3
2,089,467	-		SO1986	0.55	+0.3
2,089,467	-		SO1986	0.55	-0.2
2,089,486	+		SO1986	0.58	-0.9
2,089,503	-		SO1986	0.60	-0.4
2,089,535	-		SO1986	0.65	-0.1
2,089,728	-				-0.7
2,089,788	+				+0.2
2,089,788	+				+0.7
2,089,796	-				+1.0
2,089,796	-				-0.1
2,089,932	+				-0.9
2,089,939	+				+0.9
2,089,958	-		SO1987	0.12	+0.1
2,090,152	+		SO1987	0.47	+0.6
2,090,152	+		SO1987	0.47	-0.5
2,090,152	+		SO1987	0.47	+0.1
2,090,160	-		SO1987	0.49	+0.2
2,090,161	-		SO1987	0.49	+0.1
2,090,300	-		SO1987	0.74	+0.1
2,090,305	+		SO1987	0.75	-0.4
2,090,305	+		SO1987	0.75	-0.7
2,090,305	+		SO1987	0.75	-0.0
2,090,305	-		SO1987	0.75	+0.4
2,090,313	-		SO1987	0.77	+0.6
2,090,313	-		SO1987	0.77	-0.3
2,090,313	-		SO1987	0.77	+0.4
2,090,315	+		SO1987	0.77	+0.3
2,090,315	+		SO1987	0.77	-0.3
2,090,315	+		SO1987	0.77	+0.6
2,090,315	+		SO1987	0.77	+0.1
2,090,315	+		SO1987	0.77	-0.5
2,090,315	+		SO1987	0.77	+0.1
2,090,315	+		SO1987	0.77	+0.1
2,090,323	-		SO1987	0.78	-0.5
2,090,323	-		SO1987	0.78	-0.1
2,090,323	-		SO1987	0.78	-0.2
2,090,323	-		SO1987	0.78	-0.9
2,090,323	-		SO1987	0.78	+0.4
2,090,323	-		SO1987	0.78	+0.1
2,090,323	-		SO1987	0.78	-0.2
2,090,388	+				-0.7
2,090,478	-				-0.7
2,090,502	+				-0.0
2,090,542	+				+0.6
2,090,550	-				+0.0
2,090,645	+		SO1988	0.17	-0.2
2,090,660	-		SO1988	0.20	+0.5
2,090,664	+		SO1988	0.20	+0.3
2,090,700	-		SO1988	0.26	-0.2
2,090,767	-		SO1988	0.37	+0.1