Strain Fitness in Shewanella oneidensis MR-1 around SO1192

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
1,234,332	-				-1.4
1,234,332	-				+0.3
1,234,366	-				+0.8
1,234,434	-				-0.4
1,234,451	-				-0.4
1,234,463	+	greA	SO1191	0.10	-2.0
1,234,474	+	greA	SO1191	0.12	-0.4
1,234,577	-	greA	SO1191	0.34	-0.7
1,234,928	-				+0.5
1,234,982	+				-2.0
1,235,040	-				+0.2
1,235,244	+		SO1192	0.14	+0.2
1,235,246	+		SO1192	0.15	-0.2
1,235,338	+		SO1192	0.32	+0.6
1,235,392	+		SO1192	0.42	+0.1
1,235,438	-		SO1192	0.51	+0.2
1,235,473	+		SO1192	0.58	+1.0
1,235,500	+		SO1192	0.63	-0.1
1,235,517	+		SO1192	0.66	-0.7
1,235,539	-		SO1192	0.70	-0.0
1,235,691	+				+0.5
1,235,691	+				+1.0
1,235,699	-				+0.2
1,235,699	-				-0.0
1,235,871	+				-0.0
1,235,898	-				+0.2
1,235,948	-				-0.4
1,236,070	-				-0.1
1,236,073	+				-0.3
1,236,126	-				+0.0
1,236,163	-				-0.0
1,236,181	+	secD-1	SO1193	0.10	-0.5
1,236,188	+	secD-1	SO1193	0.11	-0.5
1,236,280	+	secD-1	SO1193	0.16	+0.6
1,236,287	+	secD-1	SO1193	0.16	+0.7
1,236,311	+	secD-1	SO1193	0.17	-0.0
1,236,336	+	secD-1	SO1193	0.19	-0.3
1,236,453	+	secD-1	SO1193	0.25	+0.5
1,236,459	+	secD-1	SO1193	0.25	+0.1
1,236,462	-	secD-1	SO1193	0.25	-0.1
1,236,468	-	secD-1	SO1193	0.26	-0.3
1,236,537	-	secD-1	SO1193	0.29	-0.2
1,236,576	+	secD-1	SO1193	0.31	+0.7
1,236,576	+	secD-1	SO1193	0.31	+1.0
1,236,584	-	secD-1	SO1193	0.32	-0.1
1,236,636	+	secD-1	SO1193	0.35	+0.6