Strain Fitness in Shewanella oneidensis MR-1 around SO0066

Experiment: Chloramphenicol 0.0004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0004 mg/ml
71,384	+	mog	SO0065	0.47	+0.2
71,384	+	mog	SO0065	0.47	-0.5
71,384	+	mog	SO0065	0.47	-0.4
71,392	-	mog	SO0065	0.48	-0.3
71,392	-	mog	SO0065	0.48	-0.8
71,392	-	mog	SO0065	0.48	+0.0
71,392	-	mog	SO0065	0.48	-0.7
71,392	-	mog	SO0065	0.48	-1.5
71,404	-	mog	SO0065	0.51	+0.5
71,447	-	mog	SO0065	0.59	-0.8
71,507	+	mog	SO0065	0.70	-0.8
71,599	-	mog	SO0065	0.87	+0.1
71,609	-	mog	SO0065	0.89	+0.0
71,618	-				-0.4
71,645	-				+0.5
71,661	-				+0.6
71,729	+				+0.6
71,989	+				-1.0
71,997	-				+0.3
72,011	-				-1.2
72,043	+				+1.5
72,082	+				-0.2
72,090	-				+0.3
72,104	-				-0.2
72,151	+				-0.3
72,160	-				-0.3
72,163	+				-0.2
72,246	-				-0.3
72,262	+				-0.0
72,276	+				+0.3
72,294	+				-0.3
72,340	+				+0.1
72,340	+				-0.1
72,363	+				-0.4
72,418	+				-0.0
72,474	+				+0.3
72,479	+				-0.6
72,521	-				-0.4
72,525	+				-0.1
72,525	+				-0.2
72,525	+				-0.5
72,525	+				-0.2
72,533	-				-0.4
72,533	-				+0.0
72,533	-				+0.1
72,533	-				+0.3
72,533	-				-0.1
72,533	-				+0.1
72,535	+				-0.7
72,535	+				+1.2
72,570	+				+0.3
72,585	+				+0.1
72,585	+				-0.8
72,585	+				-0.7
72,585	+				-0.3
72,593	-				+0.2
72,593	-				-0.1
72,593	-				+0.3
72,660	-				+0.0
72,704	+				-0.7
72,718	+				-0.1
72,726	-				+0.1
72,759	+				-0.3
72,800	+				+0.2
72,800	+				+0.5
72,831	+				+0.7
72,831	+				-1.0
72,831	+				+0.1
72,849	-				+0.1
72,873	+				+1.1
72,931	+				-0.2
72,976	+		SO0066	0.11	-0.0
72,984	-		SO0066	0.11	-0.3
72,984	-		SO0066	0.11	-0.5
72,986	-		SO0066	0.11	+0.4
72,995	+		SO0066	0.11	-0.3
72,996	-		SO0066	0.11	+0.1
72,996	-		SO0066	0.11	+0.2
72,996	-		SO0066	0.11	+0.1
72,997	-		SO0066	0.11	+0.0
73,049	-		SO0066	0.12	-0.3
73,086	+		SO0066	0.13	-0.4
73,160	+		SO0066	0.14	-0.1
73,160	+		SO0066	0.14	-0.0
73,160	+		SO0066	0.14	-0.1
73,160	+		SO0066	0.14	-0.8
73,160	+		SO0066	0.14	-0.8
73,160	+		SO0066	0.14	-0.3
73,160	+		SO0066	0.14	-0.0
73,168	-		SO0066	0.14	+0.4
73,168	-		SO0066	0.14	+0.0
73,168	-		SO0066	0.14	-0.2
73,168	-		SO0066	0.14	-0.0
73,168	-		SO0066	0.14	-0.2
73,168	-		SO0066	0.14	+0.2
73,168	-		SO0066	0.14	-0.4
73,168	-		SO0066	0.14	+0.5
73,168	-		SO0066	0.14	-0.5
73,168	-		SO0066	0.14	-1.2
73,168	-		SO0066	0.14	-0.3
73,250	-		SO0066	0.16	+0.1
73,266	-		SO0066	0.16	+0.1
73,299	+		SO0066	0.16	+0.4
73,305	+		SO0066	0.17	-0.2
73,307	-		SO0066	0.17	+0.4
73,313	-		SO0066	0.17	-0.2
73,360	+		SO0066	0.17	+0.8
73,360	+		SO0066	0.17	+0.2
73,368	-		SO0066	0.18	-0.4
73,381	+		SO0066	0.18	-1.0
73,427	-		SO0066	0.19	+0.4
73,433	+		SO0066	0.19	-0.3
73,433	+		SO0066	0.19	-0.5
73,660	-		SO0066	0.23	-0.4
73,667	+		SO0066	0.23	-1.5
73,668	+		SO0066	0.23	+0.0
73,675	-		SO0066	0.23	-0.5
74,002	+		SO0066	0.29	-0.4
74,003	-		SO0066	0.29	-0.4
74,010	-		SO0066	0.29	-0.5
74,107	+		SO0066	0.31	-0.1
74,214	-		SO0066	0.32	-0.4
74,287	+		SO0066	0.34	-0.2
74,326	+		SO0066	0.34	+0.0
74,387	-		SO0066	0.36	+0.1
74,400	-		SO0066	0.36	-0.8
74,504	+		SO0066	0.38	+0.1
74,512	-		SO0066	0.38	-0.6
74,524	+		SO0066	0.38	-0.0
74,528	+		SO0066	0.38	-0.4
74,534	-		SO0066	0.38	-0.1
74,583	-		SO0066	0.39	-0.1
74,591	+		SO0066	0.39	-0.1
74,599	-		SO0066	0.39	-1.0
74,628	+		SO0066	0.40	-0.6
74,628	+		SO0066	0.40	+0.0
74,636	-		SO0066	0.40	+0.2
74,639	+		SO0066	0.40	+0.3
74,650	+		SO0066	0.40	-0.2
74,658	-		SO0066	0.40	-0.6
74,676	+		SO0066	0.41	-0.4
74,719	+		SO0066	0.41	-0.3
74,803	+		SO0066	0.43	+0.0
74,836	-		SO0066	0.43	-0.1
74,878	-		SO0066	0.44	+0.0
74,986	+		SO0066	0.46	-0.3
74,997	-		SO0066	0.46	-0.1
75,129	+		SO0066	0.49	-0.6
75,239	-		SO0066	0.50	-0.4
75,361	+		SO0066	0.53	-1.0
75,390	+		SO0066	0.53	-0.4
75,390	+		SO0066	0.53	+0.3
75,469	+		SO0066	0.55	-0.4
75,469	+		SO0066	0.55	-0.3
75,471	+		SO0066	0.55	+0.2
75,528	+		SO0066	0.56	-0.2
75,586	-		SO0066	0.57	-0.3
75,617	-		SO0066	0.57	-0.8
75,649	+		SO0066	0.58	-0.2
75,664	-		SO0066	0.58	-0.1
75,704	-		SO0066	0.59	+0.4
75,716	-		SO0066	0.59	-2.3
75,738	+		SO0066	0.59	-0.1
75,757	+		SO0066	0.60	-1.0
75,844	+		SO0066	0.61	+0.2
76,038	-		SO0066	0.64	-0.5
76,118	+		SO0066	0.66	+0.3
76,118	+		SO0066	0.66	-0.2
76,118	+		SO0066	0.66	-0.2
76,118	+		SO0066	0.66	-0.6
76,126	-		SO0066	0.66	-0.3
76,126	-		SO0066	0.66	+0.1
76,126	-		SO0066	0.66	+0.2
76,184	+		SO0066	0.67	-0.3
76,184	+		SO0066	0.67	+1.1
76,242	+		SO0066	0.68	-0.2
76,242	+		SO0066	0.68	-0.1
76,242	+		SO0066	0.68	-0.5
76,242	+		SO0066	0.68	-0.6
76,242	+		SO0066	0.68	-0.1
76,242	+		SO0066	0.68	+0.1
76,250	-		SO0066	0.68	-0.2
76,250	-		SO0066	0.68	-0.2
76,306	+		SO0066	0.69	-0.1
76,353	-		SO0066	0.70	-0.1
76,354	-		SO0066	0.70	-0.1
76,376	+		SO0066	0.70	-0.1
76,396	-		SO0066	0.71	+0.1
76,398	+		SO0066	0.71	-0.4
76,416	+		SO0066	0.71	-0.4
76,467	+		SO0066	0.72	+0.5
76,478	-		SO0066	0.72	-0.3
76,504	+		SO0066	0.73	-0.8
76,504	+		SO0066	0.73	+0.0
76,509	+		SO0066	0.73	-0.2
76,512	-		SO0066	0.73	+0.2
76,514	+		SO0066	0.73	+0.7
76,579	+		SO0066	0.74	+0.1
76,579	+		SO0066	0.74	-0.6
76,579	+		SO0066	0.74	-0.2
76,579	+		SO0066	0.74	-0.2
76,587	-		SO0066	0.74	+0.1
76,587	-		SO0066	0.74	-0.2
76,587	-		SO0066	0.74	-1.1
76,587	-		SO0066	0.74	+0.2
76,591	+		SO0066	0.74	-0.5
76,591	+		SO0066	0.74	+0.2
76,591	+		SO0066	0.74	-0.5
76,599	-		SO0066	0.74	-0.1
76,599	-		SO0066	0.74	-1.0
76,599	-		SO0066	0.74	-0.3
76,599	-		SO0066	0.74	+0.2
76,608	+		SO0066	0.74	-0.3
76,608	+		SO0066	0.74	-1.1
76,616	+		SO0066	0.75	+0.5
76,616	-		SO0066	0.75	-0.5
76,616	-		SO0066	0.75	+0.4
76,697	-		SO0066	0.76	+0.2
76,755	-		SO0066	0.77	+0.2
76,759	+		SO0066	0.77	-0.2
76,783	+		SO0066	0.78	+0.1
76,809	-		SO0066	0.78	-0.5
76,851	+		SO0066	0.79	-0.3
76,859	-		SO0066	0.79	+0.0
76,859	-		SO0066	0.79	+0.1
76,873	+		SO0066	0.79	-0.1
76,873	+		SO0066	0.79	-0.4
76,873	+		SO0066	0.79	-0.0
76,881	-		SO0066	0.79	-0.2
76,881	-		SO0066	0.79	+0.3
76,881	-		SO0066	0.79	-0.2
76,906	-		SO0066	0.80	-0.1
76,923	-		SO0066	0.80	-0.1
76,927	+		SO0066	0.80	+0.0
76,930	-		SO0066	0.80	-0.2
76,976	+		SO0066	0.81	-0.2
76,984	+		SO0066	0.81	-0.3
76,984	+		SO0066	0.81	-0.1
76,989	+		SO0066	0.81	-0.5
76,989	+		SO0066	0.81	-0.5
76,992	-		SO0066	0.81	-0.1
76,992	-		SO0066	0.81	-0.0
76,992	-		SO0066	0.81	+0.3
76,997	-		SO0066	0.81	-0.0
76,997	-		SO0066	0.81	+0.4
77,002	-		SO0066	0.81	+0.3
77,092	-		SO0066	0.83	-1.1
77,121	+		SO0066	0.84	+0.7
77,121	+		SO0066	0.84	+0.8
77,129	-		SO0066	0.84	-1.4
77,129	-		SO0066	0.84	-0.2
77,242	-		SO0066	0.86	-0.2
77,301	+		SO0066	0.87	+0.4
77,301	+		SO0066	0.87	+0.3
77,301	+		SO0066	0.87	-0.6
77,304	-		SO0066	0.87	-0.1
77,309	-		SO0066	0.87	+0.6
77,309	-		SO0066	0.87	-0.4
77,309	-		SO0066	0.87	+0.5
77,309	-		SO0066	0.87	-0.2
77,309	-		SO0066	0.87	-0.2
77,310	-		SO0066	0.87	-0.5
77,364	+		SO0066	0.88	-1.1
77,424	+		SO0066	0.89	-1.0
77,424	+		SO0066	0.89	-0.3
77,432	-		SO0066	0.89	+0.3
77,549	+				-0.8
77,549	+				+0.2
77,549	+				-0.2
77,557	-				-0.0
77,592	+				-1.6
77,592	+				-0.1
77,600	-				-0.0
77,619	-				-0.3
77,630	+				+0.5
77,630	+				-0.4
77,630	+				-0.3
77,630	+				-0.2
77,630	+				-0.3
77,651	+				-0.7
77,699	+				-0.4
77,699	+				-0.1
77,820	-				+0.0
77,987	+				+0.0
77,987	+				+0.4
78,000	+				-0.3
78,000	+				-0.9
78,106	+				+0.0
78,106	+				-0.1
78,106	+				-0.7
78,106	+				-0.2
78,106	+				-0.4
78,113	+				+0.3
78,113	+				+0.1
78,114	-				-0.2
78,114	-				+0.4
78,114	-				-0.2
78,121	-				-1.0
78,121	-				-0.3
78,159	-				-0.1
78,169	-				+0.1
78,195	+				-0.5
78,195	+				+0.8
78,195	+				+0.3
78,203	-				-0.4
78,203	-				-0.3
78,203	-				+0.2
78,223	-				-0.4
78,301	+		SO0067	0.11	+0.2
78,307	+		SO0067	0.11	+0.2
78,322	+		SO0067	0.12	-1.5
78,429	+		SO0067	0.16	+0.1
78,432	-		SO0067	0.16	+0.2
78,442	-		SO0067	0.17	+0.6
78,452	-		SO0067	0.17	+0.1
78,497	+		SO0067	0.19	+0.3
78,505	-		SO0067	0.20	-0.1
78,509	+		SO0067	0.20	-0.3
78,515	-		SO0067	0.20	-1.4
78,515	-		SO0067	0.20	-0.3
78,601	-		SO0067	0.24	+0.3
78,601	-		SO0067	0.24	+0.0
78,606	+		SO0067	0.24	-0.5
78,614	-		SO0067	0.24	+0.1
78,614	-		SO0067	0.24	-0.1
78,753	+		SO0067	0.30	-0.5
78,768	-		SO0067	0.31	-0.2
78,841	+		SO0067	0.34	-0.0
78,841	+		SO0067	0.34	-1.0
78,849	-		SO0067	0.35	+0.3
78,876	-		SO0067	0.36	-0.2
78,910	+		SO0067	0.37	-0.1
78,923	-		SO0067	0.38	+0.1
79,016	+		SO0067	0.42	-0.5
79,050	-		SO0067	0.43	-0.5