Strain Fitness in Shewanella oneidensis MR-1 around SO4732

Experiment: Chloramphenicol 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0002 mg/ml
4,935,801	+	add	SO4731	0.23	+0.3
4,935,804	+	add	SO4731	0.23	-0.2
4,935,858	-	add	SO4731	0.28	+0.2
4,935,881	+	add	SO4731	0.31	+0.1
4,935,881	+	add	SO4731	0.31	+0.3
4,935,889	-	add	SO4731	0.31	+0.6
4,935,920	-	add	SO4731	0.35	-0.0
4,935,996	-	add	SO4731	0.42	+0.9
4,936,015	+	add	SO4731	0.44	-0.2
4,936,023	-	add	SO4731	0.45	-0.2
4,936,058	-	add	SO4731	0.48	-0.1
4,936,116	-	add	SO4731	0.54	-0.3
4,936,123	-	add	SO4731	0.55	+0.7
4,936,136	+	add	SO4731	0.56	+0.1
4,936,144	-	add	SO4731	0.57	-0.6
4,936,144	-	add	SO4731	0.57	+0.2
4,936,159	-	add	SO4731	0.59	-0.3
4,936,159	-	add	SO4731	0.59	+0.1
4,936,166	+	add	SO4731	0.59	-0.2
4,936,166	+	add	SO4731	0.59	+0.1
4,936,198	+	add	SO4731	0.62	-0.5
4,936,198	+	add	SO4731	0.62	+0.4
4,936,198	+	add	SO4731	0.62	+0.1
4,936,198	+	add	SO4731	0.62	-0.5
4,936,206	-	add	SO4731	0.63	+0.2
4,936,244	+	add	SO4731	0.67	+0.5
4,936,447	-	add	SO4731	0.87	+0.2
4,936,582	+				-0.0
4,936,595	-				-0.3
4,936,785	-				-0.2
4,936,790	+				+0.2
4,936,884	-				-0.4
4,936,896	-				+0.4
4,936,917	-				+0.1
4,936,938	+				-0.1
4,936,939	+				+0.4
4,936,957	-		SO4732	0.10	-0.3
4,937,042	-		SO4732	0.15	-0.1
4,937,051	-		SO4732	0.15	-0.6
4,937,092	-		SO4732	0.18	-0.3
4,937,102	-		SO4732	0.18	+0.1
4,937,163	+		SO4732	0.22	-1.2
4,937,179	+		SO4732	0.22	-0.1
4,937,210	+		SO4732	0.24	-0.9
4,937,212	+		SO4732	0.24	-0.5
4,937,222	+		SO4732	0.25	+0.2
4,937,227	+		SO4732	0.25	-0.2
4,937,235	-		SO4732	0.26	-0.7
4,937,235	-		SO4732	0.26	+0.3
4,937,235	-		SO4732	0.26	-0.4
4,937,246	-		SO4732	0.26	+0.1
4,937,285	-		SO4732	0.28	-0.7
4,937,337	-		SO4732	0.31	+0.5
4,937,342	+		SO4732	0.31	+1.2
4,937,360	-		SO4732	0.32	-0.2
4,937,432	+		SO4732	0.36	-2.1
4,937,460	-		SO4732	0.38	-0.7
4,937,493	-		SO4732	0.40	-0.0
4,937,526	-		SO4732	0.42	+0.7
4,937,565	+		SO4732	0.44	-0.2
4,937,572	+		SO4732	0.44	-2.3
4,937,692	-		SO4732	0.51	-0.3
4,937,727	+		SO4732	0.53	+0.1
4,937,735	+		SO4732	0.53	-0.5
4,937,820	+		SO4732	0.58	-0.8
4,937,904	-		SO4732	0.63	-0.4
4,937,949	+		SO4732	0.65	-0.6
4,938,040	+		SO4732	0.70	-0.1
4,938,041	+		SO4732	0.70	-0.3
4,938,041	+		SO4732	0.70	+0.3
4,938,041	+		SO4732	0.70	+0.1
4,938,041	+		SO4732	0.70	+0.0
4,938,046	+		SO4732	0.70	+0.4
4,938,049	-		SO4732	0.71	-0.1
4,938,049	-		SO4732	0.71	-0.2
4,938,143	+		SO4732	0.76	-0.1
4,938,233	+		SO4732	0.81	-0.4
4,938,233	+		SO4732	0.81	-0.8
4,938,241	-		SO4732	0.81	-0.8
4,938,438	+				+0.1
4,938,446	-				-0.6
4,938,456	-				+0.8
4,938,584	+				+0.2
4,938,632	-				-0.4
4,938,635	+				-0.6
4,938,635	+				-0.2
4,938,726	+				-0.2
4,938,839	+	lypA	SO4733	0.16	-0.5
4,938,839	+	lypA	SO4733	0.16	+0.3
4,938,881	-	lypA	SO4733	0.20	+0.3
4,939,056	+	lypA	SO4733	0.38	+0.5
4,939,074	-	lypA	SO4733	0.40	+0.1
4,939,081	+	lypA	SO4733	0.41	-0.4
4,939,110	+	lypA	SO4733	0.43	-0.1
4,939,198	-	lypA	SO4733	0.52	-0.7
4,939,243	+	lypA	SO4733	0.57	-0.4
4,939,270	+	lypA	SO4733	0.60	+0.3
4,939,278	-	lypA	SO4733	0.60	-1.1
4,939,299	-	lypA	SO4733	0.63	-0.4
4,939,333	+	lypA	SO4733	0.66	-0.2
4,939,389	+	lypA	SO4733	0.72	-0.4
4,939,450	+	lypA	SO4733	0.78	-1.4
4,939,463	-	lypA	SO4733	0.79	-0.4
4,939,495	+	lypA	SO4733	0.82	-0.6