Strain Fitness in Shewanella oneidensis MR-1 around SO3254

Experiment: Chloramphenicol 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0002 mg/ml
3,390,695	+				+0.4
3,390,695	+				+0.2
3,390,703	-				+0.0
3,390,705	+				-0.2
3,390,708	+				-0.1
3,390,710	+				-0.3
3,390,718	+				+1.6
3,390,844	-				-0.5
3,390,846	+				+0.5
3,390,864	+				-0.6
3,390,872	-				-0.1
3,390,882	-				-1.0
3,390,974	+				-0.0
3,390,974	+				-0.2
3,390,974	+				+0.4
3,390,976	+		SO3253	0.10	+0.1
3,390,984	-		SO3253	0.11	-0.3
3,390,994	-		SO3253	0.13	+1.6
3,390,996	-		SO3253	0.13	-0.1
3,391,084	-		SO3253	0.25	-0.3
3,391,121	+		SO3253	0.31	+0.1
3,391,155	+		SO3253	0.35	+0.4
3,391,155	+		SO3253	0.35	-0.7
3,391,163	+		SO3253	0.37	+0.0
3,391,196	-		SO3253	0.41	-0.1
3,391,199	+		SO3253	0.42	+0.0
3,391,202	-		SO3253	0.42	+0.4
3,391,202	-		SO3253	0.42	-0.2
3,391,258	+		SO3253	0.50	-0.2
3,391,258	+		SO3253	0.50	+0.5
3,391,263	+		SO3253	0.51	+0.2
3,391,264	-		SO3253	0.51	+0.9
3,391,265	+		SO3253	0.51	-5.6
3,391,265	+		SO3253	0.51	-0.7
3,391,273	-		SO3253	0.52	+0.4
3,391,273	-		SO3253	0.52	+0.4
3,391,289	+		SO3253	0.54	-0.3
3,391,289	+		SO3253	0.54	-0.3
3,391,308	-		SO3253	0.57	+0.3
3,391,337	+		SO3253	0.61	-0.0
3,391,362	+		SO3253	0.65	-0.1
3,391,362	+		SO3253	0.65	+0.6
3,391,370	-		SO3253	0.66	-0.2
3,391,370	-		SO3253	0.66	+0.9
3,391,370	-		SO3253	0.66	-0.4
3,391,370	-		SO3253	0.66	-0.6
3,391,383	+		SO3253	0.68	-0.0
3,391,391	-		SO3253	0.69	+1.3
3,391,422	+		SO3253	0.73	+0.1
3,391,496	+		SO3253	0.84	-0.5
3,391,510	-		SO3253	0.86	-0.0
3,391,616	+				-0.5
3,391,667	+				+0.2
3,391,731	+	flgM	SO3254	0.14	-0.3
3,391,745	+	flgM	SO3254	0.18	+0.0
3,391,745	+	flgM	SO3254	0.18	-0.5
3,391,745	+	flgM	SO3254	0.18	+0.2
3,391,745	+	flgM	SO3254	0.18	-0.2
3,391,745	+	flgM	SO3254	0.18	-0.3
3,391,745	+	flgM	SO3254	0.18	-0.4
3,391,745	+	flgM	SO3254	0.18	+0.0
3,391,745	+	flgM	SO3254	0.18	-0.9
3,391,745	+	flgM	SO3254	0.18	+0.9
3,391,745	+	flgM	SO3254	0.18	+0.9
3,391,845	+	flgM	SO3254	0.49	+1.5
3,391,845	+	flgM	SO3254	0.49	+0.1
3,391,987	+				+0.5
3,392,042	+				+0.2
3,392,253	+	flgN	SO3255	0.55	+0.2
3,392,266	-	flgN	SO3255	0.58	-0.2
3,392,266	-	flgN	SO3255	0.58	+0.4
3,392,336	+	flgN	SO3255	0.75	-0.1
3,392,341	+	flgN	SO3255	0.76	-0.2
3,392,349	-	flgN	SO3255	0.78	-0.2
3,392,394	+	flgN	SO3255	0.88	-0.7
3,392,529	-				-0.1
3,392,530	+				-0.2
3,392,540	+				-0.5
3,392,548	-				-0.1
3,392,548	-				-0.3
3,392,548	-				-0.2
3,392,685	+		SO3256	0.28	-1.2
3,392,742	+		SO3256	0.40	-0.3
3,392,891	-		SO3256	0.74	+0.1
3,392,904	+		SO3256	0.76	+2.3
3,392,912	-		SO3256	0.78	+0.0
3,392,912	-		SO3256	0.78	-0.0
3,392,912	-		SO3256	0.78	-1.2