Strain Fitness in Shewanella oneidensis MR-1 around SO2099

Experiment: Chloramphenicol 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloramphenicol 0.0002 mg/ml
2,195,883	+	hyaB	SO2098	0.42	+0.1
2,195,891	-	hyaB	SO2098	0.43	+0.5
2,195,913	-	hyaB	SO2098	0.44	+0.3
2,196,063	+	hyaB	SO2098	0.53	+0.8
2,196,112	+	hyaB	SO2098	0.56	-0.1
2,196,167	+	hyaB	SO2098	0.59	+0.2
2,196,202	+	hyaB	SO2098	0.61	+0.4
2,196,280	+	hyaB	SO2098	0.66	-0.7
2,196,333	-	hyaB	SO2098	0.69	-0.3
2,196,389	+	hyaB	SO2098	0.72	+0.3
2,196,401	+	hyaB	SO2098	0.73	-0.2
2,196,403	+	hyaB	SO2098	0.73	+0.2
2,196,409	-	hyaB	SO2098	0.73	+0.5
2,196,409	-	hyaB	SO2098	0.73	+0.4
2,196,409	-	hyaB	SO2098	0.73	+0.1
2,196,409	-	hyaB	SO2098	0.73	+0.6
2,196,411	+	hyaB	SO2098	0.73	+0.4
2,196,513	+	hyaB	SO2098	0.79	-0.1
2,196,516	-	hyaB	SO2098	0.79	-1.1
2,196,517	+	hyaB	SO2098	0.80	-0.0
2,196,540	-	hyaB	SO2098	0.81	-0.2
2,196,555	-	hyaB	SO2098	0.82	-0.7
2,196,577	+	hyaB	SO2098	0.83	-1.6
2,196,585	-	hyaB	SO2098	0.84	-1.4
2,196,585	-	hyaB	SO2098	0.84	-0.0
2,196,686	-	hyaB	SO2098	0.89	+0.3
2,196,715	+				-1.1
2,196,723	-				-0.8
2,196,736	+				-0.2
2,196,736	+				-0.7
2,196,783	+				-0.4
2,196,832	+				-0.2
2,196,959	+				-0.0
2,196,996	-	hoxK	SO2099	0.11	-0.3
2,197,039	+	hoxK	SO2099	0.15	+0.4
2,197,039	+	hoxK	SO2099	0.15	-0.2
2,197,047	-	hoxK	SO2099	0.16	-0.9
2,197,093	-	hoxK	SO2099	0.20	-0.0
2,197,163	+	hoxK	SO2099	0.26	-0.7
2,197,218	-	hoxK	SO2099	0.31	+0.3
2,197,390	-	hoxK	SO2099	0.46	+0.9
2,197,401	+	hoxK	SO2099	0.47	+0.6
2,197,401	+	hoxK	SO2099	0.47	-0.3
2,197,401	+	hoxK	SO2099	0.47	+0.4
2,197,409	-	hoxK	SO2099	0.47	-0.4
2,197,409	-	hoxK	SO2099	0.47	+0.7
2,197,409	-	hoxK	SO2099	0.47	+0.5
2,197,409	-	hoxK	SO2099	0.47	-0.1
2,197,409	-	hoxK	SO2099	0.47	-0.2
2,197,416	+	hoxK	SO2099	0.48	+0.3
2,197,416	+	hoxK	SO2099	0.48	-0.1
2,197,416	+	hoxK	SO2099	0.48	-0.7
2,197,416	+	hoxK	SO2099	0.48	-0.6
2,197,508	+	hoxK	SO2099	0.56	-1.4
2,197,516	-	hoxK	SO2099	0.57	-0.0
2,197,775	+	hoxK	SO2099	0.80	-0.1
2,197,834	+	hoxK	SO2099	0.85	-0.0
2,197,947	-				-0.8
2,197,954	+				-0.3
2,197,996	-				-0.7
2,198,261	-				+0.1
2,198,388	+				+0.1
2,198,388	+				+0.5
2,198,506	+		SO2100	0.32	-0.3
2,198,506	+		SO2100	0.32	+0.1
2,198,681	+		SO2100	0.70	-0.3
2,198,792	-				+0.6
2,198,823	-				-0.3
2,198,894	-		SO2101	0.31	+0.0
2,199,003	-		SO2101	0.80	+0.4