Strain Fitness in Shewanella amazonensis SB2B around Sama_1464

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1463 and Sama_1464 are separated by 9 nucleotidesSama_1464 and Sama_1465 are separated by 254 nucleotidesSama_1465 and Sama_1466 are separated by 106 nucleotides Sama_1463: Sama_1463 - hypothetical protein (RefSeq), at 1,772,306 to 1,773,613 _1463 Sama_1464: Sama_1464 - hypothetical protein (RefSeq), at 1,773,623 to 1,774,795 _1464 Sama_1465: Sama_1465 - acetyltransferase (RefSeq), at 1,775,050 to 1,775,670 _1465 Sama_1466: Sama_1466 - hypothetical protein (RefSeq), at 1,775,777 to 1,776,190 _1466 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1772.634 kb on + strand, within Sama_1463at 1772.634 kb on + strand, within Sama_1463at 1772.634 kb on + strand, within Sama_1463at 1772.634 kb on + strand, within Sama_1463at 1772.634 kb on + strand, within Sama_1463at 1772.634 kb on + strand, within Sama_1463at 1772.635 kb on - strand, within Sama_1463at 1772.635 kb on - strand, within Sama_1463at 1772.635 kb on - strand, within Sama_1463at 1772.799 kb on + strand, within Sama_1463at 1772.799 kb on + strand, within Sama_1463at 1772.800 kb on - strand, within Sama_1463at 1772.870 kb on - strand, within Sama_1463at 1772.895 kb on + strand, within Sama_1463at 1772.895 kb on + strand, within Sama_1463at 1772.896 kb on - strand, within Sama_1463at 1772.896 kb on - strand, within Sama_1463at 1772.896 kb on - strand, within Sama_1463at 1772.896 kb on - strand, within Sama_1463at 1772.897 kb on + strand, within Sama_1463at 1772.898 kb on - strand, within Sama_1463at 1772.898 kb on - strand, within Sama_1463at 1772.898 kb on - strand, within Sama_1463at 1772.898 kb on - strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.927 kb on + strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.928 kb on - strand, within Sama_1463at 1772.931 kb on + strand, within Sama_1463at 1772.931 kb on + strand, within Sama_1463at 1772.931 kb on + strand, within Sama_1463at 1772.932 kb on - strand, within Sama_1463at 1772.932 kb on - strand, within Sama_1463at 1772.932 kb on - strand, within Sama_1463at 1772.932 kb on - strand, within Sama_1463at 1772.998 kb on + strand, within Sama_1463at 1772.998 kb on + strand, within Sama_1463at 1772.999 kb on - strand, within Sama_1463at 1773.023 kb on + strand, within Sama_1463at 1773.024 kb on - strand, within Sama_1463at 1773.024 kb on - strand, within Sama_1463at 1773.036 kb on + strand, within Sama_1463at 1773.036 kb on + strand, within Sama_1463at 1773.037 kb on - strand, within Sama_1463at 1773.037 kb on - strand, within Sama_1463at 1773.048 kb on + strand, within Sama_1463at 1773.166 kb on + strand, within Sama_1463at 1773.273 kb on + strand, within Sama_1463at 1773.292 kb on - strand, within Sama_1463at 1773.292 kb on - strand, within Sama_1463at 1773.340 kb on - strand, within Sama_1463at 1773.405 kb on + strand, within Sama_1463at 1773.405 kb on + strand, within Sama_1463at 1773.406 kb on - strand, within Sama_1463at 1773.406 kb on - strand, within Sama_1463at 1773.408 kb on + strand, within Sama_1463at 1773.408 kb on + strand, within Sama_1463at 1773.409 kb on - strand, within Sama_1463at 1773.409 kb on - strand, within Sama_1463at 1773.458 kb on - strand, within Sama_1463at 1773.476 kb on + strand, within Sama_1463at 1773.528 kb on - strandat 1773.528 kb on - strandat 1773.557 kb on + strandat 1773.557 kb on + strandat 1773.557 kb on + strandat 1773.557 kb on + strandat 1773.557 kb on + strandat 1773.558 kb on - strandat 1773.558 kb on - strandat 1773.558 kb on - strandat 1773.558 kb on - strandat 1773.580 kb on + strandat 1773.580 kb on + strandat 1773.580 kb on + strandat 1773.581 kb on - strandat 1773.581 kb on - strandat 1773.581 kb on - strandat 1773.613 kb on + strandat 1773.624 kb on + strandat 1773.624 kb on + strandat 1773.624 kb on + strandat 1773.624 kb on + strandat 1773.625 kb on - strandat 1773.660 kb on + strandat 1773.684 kb on + strandat 1773.684 kb on + strandat 1773.704 kb on - strandat 1773.733 kb on + strandat 1773.733 kb on + strandat 1773.733 kb on + strandat 1773.769 kb on - strand, within Sama_1464at 1773.873 kb on + strand, within Sama_1464at 1773.882 kb on + strand, within Sama_1464at 1773.883 kb on - strand, within Sama_1464at 1773.901 kb on + strand, within Sama_1464at 1773.902 kb on - strand, within Sama_1464at 1773.921 kb on + strand, within Sama_1464at 1773.922 kb on - strand, within Sama_1464at 1773.925 kb on + strand, within Sama_1464at 1773.925 kb on + strand, within Sama_1464at 1773.925 kb on + strand, within Sama_1464at 1773.926 kb on - strand, within Sama_1464at 1773.926 kb on - strand, within Sama_1464at 1773.926 kb on - strand, within Sama_1464at 1773.926 kb on - strand, within Sama_1464at 1773.926 kb on - strand, within Sama_1464at 1773.998 kb on - strand, within Sama_1464at 1774.016 kb on - strand, within Sama_1464at 1774.016 kb on - strand, within Sama_1464at 1774.026 kb on + strand, within Sama_1464at 1774.026 kb on + strand, within Sama_1464at 1774.027 kb on - strand, within Sama_1464at 1774.031 kb on - strand, within Sama_1464at 1774.031 kb on - strand, within Sama_1464at 1774.059 kb on + strand, within Sama_1464at 1774.060 kb on - strand, within Sama_1464at 1774.060 kb on - strand, within Sama_1464at 1774.060 kb on - strand, within Sama_1464at 1774.112 kb on - strand, within Sama_1464at 1774.135 kb on + strand, within Sama_1464at 1774.135 kb on + strand, within Sama_1464at 1774.257 kb on + strand, within Sama_1464at 1774.279 kb on + strand, within Sama_1464at 1774.280 kb on - strand, within Sama_1464at 1774.324 kb on + strand, within Sama_1464at 1774.325 kb on - strand, within Sama_1464at 1774.344 kb on + strand, within Sama_1464at 1774.419 kb on + strand, within Sama_1464at 1774.419 kb on + strand, within Sama_1464at 1774.419 kb on + strand, within Sama_1464at 1774.420 kb on - strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.422 kb on + strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.423 kb on - strand, within Sama_1464at 1774.427 kb on - strand, within Sama_1464at 1774.427 kb on - strand, within Sama_1464at 1774.427 kb on - strand, within Sama_1464at 1774.427 kb on - strand, within Sama_1464at 1774.467 kb on + strand, within Sama_1464at 1774.467 kb on + strand, within Sama_1464at 1774.599 kb on + strand, within Sama_1464at 1774.600 kb on - strand, within Sama_1464at 1774.812 kb on + strandat 1774.813 kb on - strandat 1774.832 kb on - strandat 1774.914 kb on + strandat 1774.914 kb on + strandat 1774.992 kb on + strandat 1774.992 kb on + strandat 1774.992 kb on + strandat 1775.007 kb on + strandat 1775.007 kb on + strandat 1775.053 kb on + strandat 1775.053 kb on + strandat 1775.053 kb on + strandat 1775.053 kb on + strandat 1775.053 kb on + strandat 1775.054 kb on - strandat 1775.093 kb on + strandat 1775.094 kb on - strandat 1775.129 kb on + strand, within Sama_1465at 1775.216 kb on + strand, within Sama_1465at 1775.216 kb on + strand, within Sama_1465at 1775.216 kb on + strand, within Sama_1465at 1775.217 kb on - strand, within Sama_1465at 1775.225 kb on - strand, within Sama_1465at 1775.225 kb on - strand, within Sama_1465at 1775.292 kb on + strand, within Sama_1465at 1775.293 kb on - strand, within Sama_1465at 1775.319 kb on + strand, within Sama_1465at 1775.320 kb on - strand, within Sama_1465at 1775.325 kb on + strand, within Sama_1465at 1775.431 kb on + strand, within Sama_1465at 1775.432 kb on - strand, within Sama_1465at 1775.667 kb on - strandat 1775.668 kb on + strandat 1775.669 kb on - strandat 1775.669 kb on - strandat 1775.669 kb on - strandat 1775.696 kb on + strandat 1775.696 kb on + strandat 1775.742 kb on + strandat 1775.776 kb on + strandat 1775.777 kb on - strandat 1775.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,772,634 + Sama_1463 0.25 -1.2
1,772,634 + Sama_1463 0.25 -0.7
1,772,634 + Sama_1463 0.25 -0.4
1,772,634 + Sama_1463 0.25 -0.2
1,772,634 + Sama_1463 0.25 +1.1
1,772,634 + Sama_1463 0.25 -1.3
1,772,635 - Sama_1463 0.25 +0.5
1,772,635 - Sama_1463 0.25 -0.6
1,772,635 - Sama_1463 0.25 -0.0
1,772,799 + Sama_1463 0.38 -0.3
1,772,799 + Sama_1463 0.38 +0.1
1,772,800 - Sama_1463 0.38 -0.5
1,772,870 - Sama_1463 0.43 -0.9
1,772,895 + Sama_1463 0.45 +0.3
1,772,895 + Sama_1463 0.45 +0.6
1,772,896 - Sama_1463 0.45 -0.6
1,772,896 - Sama_1463 0.45 -0.2
1,772,896 - Sama_1463 0.45 +0.1
1,772,896 - Sama_1463 0.45 +0.2
1,772,897 + Sama_1463 0.45 +0.1
1,772,898 - Sama_1463 0.45 -1.9
1,772,898 - Sama_1463 0.45 -0.6
1,772,898 - Sama_1463 0.45 +0.5
1,772,898 - Sama_1463 0.45 -0.6
1,772,927 + Sama_1463 0.47 +0.6
1,772,927 + Sama_1463 0.47 -0.2
1,772,927 + Sama_1463 0.47 -0.2
1,772,927 + Sama_1463 0.47 -0.3
1,772,927 + Sama_1463 0.47 +1.4
1,772,927 + Sama_1463 0.47 +0.3
1,772,927 + Sama_1463 0.47 -0.7
1,772,927 + Sama_1463 0.47 -0.6
1,772,927 + Sama_1463 0.47 -2.9
1,772,928 - Sama_1463 0.48 +0.3
1,772,928 - Sama_1463 0.48 +0.1
1,772,928 - Sama_1463 0.48 +0.7
1,772,928 - Sama_1463 0.48 -0.6
1,772,928 - Sama_1463 0.48 +1.1
1,772,928 - Sama_1463 0.48 -0.3
1,772,931 + Sama_1463 0.48 +0.0
1,772,931 + Sama_1463 0.48 +0.0
1,772,931 + Sama_1463 0.48 +1.2
1,772,932 - Sama_1463 0.48 -0.3
1,772,932 - Sama_1463 0.48 -1.6
1,772,932 - Sama_1463 0.48 +0.1
1,772,932 - Sama_1463 0.48 -0.4
1,772,998 + Sama_1463 0.53 -0.1
1,772,998 + Sama_1463 0.53 -0.3
1,772,999 - Sama_1463 0.53 -0.7
1,773,023 + Sama_1463 0.55 +2.1
1,773,024 - Sama_1463 0.55 -0.2
1,773,024 - Sama_1463 0.55 -0.1
1,773,036 + Sama_1463 0.56 -0.4
1,773,036 + Sama_1463 0.56 -0.7
1,773,037 - Sama_1463 0.56 -0.6
1,773,037 - Sama_1463 0.56 -0.5
1,773,048 + Sama_1463 0.57 -0.7
1,773,166 + Sama_1463 0.66 -0.2
1,773,273 + Sama_1463 0.74 -0.9
1,773,292 - Sama_1463 0.75 -0.3
1,773,292 - Sama_1463 0.75 +0.6
1,773,340 - Sama_1463 0.79 +0.5
1,773,405 + Sama_1463 0.84 -0.3
1,773,405 + Sama_1463 0.84 +0.5
1,773,406 - Sama_1463 0.84 +0.4
1,773,406 - Sama_1463 0.84 -0.7
1,773,408 + Sama_1463 0.84 -0.6
1,773,408 + Sama_1463 0.84 -0.5
1,773,409 - Sama_1463 0.84 +0.3
1,773,409 - Sama_1463 0.84 -0.4
1,773,458 - Sama_1463 0.88 -0.7
1,773,476 + Sama_1463 0.89 -0.5
1,773,528 - -0.2
1,773,528 - -0.5
1,773,557 + +0.5
1,773,557 + +1.3
1,773,557 + -0.7
1,773,557 + -1.0
1,773,557 + -0.3
1,773,558 - -0.2
1,773,558 - -0.1
1,773,558 - -1.6
1,773,558 - -1.7
1,773,580 + -1.7
1,773,580 + -1.9
1,773,580 + +0.5
1,773,581 - -0.7
1,773,581 - +1.2
1,773,581 - +0.4
1,773,613 + -0.6
1,773,624 + +0.3
1,773,624 + +1.2
1,773,624 + -0.2
1,773,624 + +0.0
1,773,625 - +0.1
1,773,660 + -0.6
1,773,684 + -0.2
1,773,684 + +1.4
1,773,704 - -1.0
1,773,733 + -0.0
1,773,733 + +0.1
1,773,733 + -0.2
1,773,769 - Sama_1464 0.12 -0.7
1,773,873 + Sama_1464 0.21 +0.2
1,773,882 + Sama_1464 0.22 -1.5
1,773,883 - Sama_1464 0.22 +0.4
1,773,901 + Sama_1464 0.24 -1.0
1,773,902 - Sama_1464 0.24 -1.0
1,773,921 + Sama_1464 0.25 +0.7
1,773,922 - Sama_1464 0.25 +0.3
1,773,925 + Sama_1464 0.26 -0.7
1,773,925 + Sama_1464 0.26 -0.1
1,773,925 + Sama_1464 0.26 -1.5
1,773,926 - Sama_1464 0.26 -0.0
1,773,926 - Sama_1464 0.26 -0.5
1,773,926 - Sama_1464 0.26 +0.1
1,773,926 - Sama_1464 0.26 +0.3
1,773,926 - Sama_1464 0.26 +0.1
1,773,998 - Sama_1464 0.32 -0.3
1,774,016 - Sama_1464 0.34 -1.5
1,774,016 - Sama_1464 0.34 +0.1
1,774,026 + Sama_1464 0.34 +0.3
1,774,026 + Sama_1464 0.34 +1.2
1,774,027 - Sama_1464 0.34 -0.6
1,774,031 - Sama_1464 0.35 +0.1
1,774,031 - Sama_1464 0.35 -2.0
1,774,059 + Sama_1464 0.37 +0.0
1,774,060 - Sama_1464 0.37 -0.3
1,774,060 - Sama_1464 0.37 +1.4
1,774,060 - Sama_1464 0.37 -0.4
1,774,112 - Sama_1464 0.42 +0.4
1,774,135 + Sama_1464 0.44 -0.4
1,774,135 + Sama_1464 0.44 -0.5
1,774,257 + Sama_1464 0.54 -0.5
1,774,279 + Sama_1464 0.56 +0.8
1,774,280 - Sama_1464 0.56 +0.8
1,774,324 + Sama_1464 0.60 -1.5
1,774,325 - Sama_1464 0.60 -0.8
1,774,344 + Sama_1464 0.61 -0.2
1,774,419 + Sama_1464 0.68 +1.1
1,774,419 + Sama_1464 0.68 -0.3
1,774,419 + Sama_1464 0.68 +0.8
1,774,420 - Sama_1464 0.68 -0.4
1,774,422 + Sama_1464 0.68 +0.4
1,774,422 + Sama_1464 0.68 -0.3
1,774,422 + Sama_1464 0.68 -0.4
1,774,422 + Sama_1464 0.68 +0.1
1,774,422 + Sama_1464 0.68 -0.2
1,774,422 + Sama_1464 0.68 -0.2
1,774,422 + Sama_1464 0.68 -0.6
1,774,422 + Sama_1464 0.68 -0.4
1,774,422 + Sama_1464 0.68 -1.0
1,774,423 - Sama_1464 0.68 +0.2
1,774,423 - Sama_1464 0.68 +0.0
1,774,423 - Sama_1464 0.68 +0.3
1,774,423 - Sama_1464 0.68 -0.4
1,774,423 - Sama_1464 0.68 -0.4
1,774,423 - Sama_1464 0.68 -0.5
1,774,427 - Sama_1464 0.69 -0.1
1,774,427 - Sama_1464 0.69 +0.7
1,774,427 - Sama_1464 0.69 -0.5
1,774,427 - Sama_1464 0.69 -0.9
1,774,467 + Sama_1464 0.72 -0.1
1,774,467 + Sama_1464 0.72 +0.8
1,774,599 + Sama_1464 0.83 -0.8
1,774,600 - Sama_1464 0.83 +1.0
1,774,812 + +0.3
1,774,813 - +0.3
1,774,832 - +0.4
1,774,914 + -0.6
1,774,914 + +0.3
1,774,992 + +0.4
1,774,992 + +0.3
1,774,992 + -0.7
1,775,007 + +1.6
1,775,007 + -0.1
1,775,053 + +0.4
1,775,053 + -1.1
1,775,053 + -0.9
1,775,053 + -0.0
1,775,053 + +0.6
1,775,054 - -0.2
1,775,093 + +0.2
1,775,094 - +0.0
1,775,129 + Sama_1465 0.13 +0.8
1,775,216 + Sama_1465 0.27 -1.0
1,775,216 + Sama_1465 0.27 +0.2
1,775,216 + Sama_1465 0.27 -0.4
1,775,217 - Sama_1465 0.27 +0.3
1,775,225 - Sama_1465 0.28 -1.6
1,775,225 - Sama_1465 0.28 +0.9
1,775,292 + Sama_1465 0.39 -0.8
1,775,293 - Sama_1465 0.39 -0.4
1,775,319 + Sama_1465 0.43 -0.8
1,775,320 - Sama_1465 0.43 -0.7
1,775,325 + Sama_1465 0.44 -0.1
1,775,431 + Sama_1465 0.61 -1.0
1,775,432 - Sama_1465 0.62 -0.7
1,775,667 - +0.5
1,775,668 + +0.5
1,775,669 - -0.1
1,775,669 - +0.3
1,775,669 - -0.1
1,775,696 + +0.4
1,775,696 + +0.5
1,775,742 + +1.0
1,775,776 + -0.9
1,775,777 - -1.2
1,775,777 - +0.1

Or see this region's nucleotide sequence