Strain Fitness in Shewanella oneidensis MR-1 around SO2978

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,105,821	-				-0.2
3,105,924	-		SO2976	0.19	-0.3
3,105,931	-		SO2976	0.22	-0.1
3,105,962	+		SO2976	0.31	+0.5
3,105,962	+		SO2976	0.31	-0.2
3,105,962	+		SO2976	0.31	-0.0
3,105,962	+		SO2976	0.31	+0.1
3,105,962	+		SO2976	0.31	+0.0
3,105,970	-		SO2976	0.34	-0.1
3,105,970	-		SO2976	0.34	-0.8
3,105,970	-		SO2976	0.34	+0.3
3,106,035	+		SO2976	0.54	-0.3
3,106,069	+		SO2976	0.64	-1.4
3,106,082	-		SO2976	0.68	+0.0
3,106,114	+		SO2976	0.78	-0.2
3,106,364	+				+0.6
3,106,418	-				-0.4
3,106,425	+				+0.7
3,106,425	+				-0.2
3,106,425	+				+0.1
3,106,433	-				-0.1
3,106,433	-				+0.2
3,106,433	-				-1.5
3,106,537	+		SO2977	0.31	+0.2
3,106,613	-		SO2977	0.56	+0.0
3,106,635	-		SO2977	0.63	+0.0
3,106,637	+		SO2977	0.64	-0.1
3,106,637	+		SO2977	0.64	-0.2
3,106,637	+		SO2977	0.64	+0.7
3,106,637	+		SO2977	0.64	-1.2
3,106,637	+		SO2977	0.64	-0.1
3,106,645	-		SO2977	0.67	-0.2
3,106,645	-		SO2977	0.67	-0.1
3,106,645	-		SO2977	0.67	-0.5
3,106,645	-		SO2977	0.67	-0.3
3,106,690	-		SO2977	0.81	-0.2
3,106,750	+				+0.3
3,106,750	+				+0.2
3,106,758	-				-0.5
3,106,973	-		SO2978	0.14	+0.2
3,106,988	-		SO2978	0.16	-0.1
3,107,057	-		SO2978	0.21	+0.0
3,107,134	+		SO2978	0.28	-1.0
3,107,135	+		SO2978	0.28	-1.3
3,107,172	-		SO2978	0.31	-2.0
3,107,287	+		SO2978	0.41	-0.3
3,107,295	-		SO2978	0.41	+0.2
3,107,424	+		SO2978	0.52	-0.0
3,107,432	-		SO2978	0.53	-0.5
3,107,446	+		SO2978	0.54	-0.2
3,107,482	-		SO2978	0.57	+0.0
3,107,497	+		SO2978	0.58	-0.2
3,107,497	+		SO2978	0.58	-2.9
3,107,497	+		SO2978	0.58	-0.1
3,107,505	-		SO2978	0.59	+0.0
3,107,505	-		SO2978	0.59	-0.3
3,107,505	-		SO2978	0.59	+0.3
3,107,505	-		SO2978	0.59	-0.3
3,107,601	-		SO2978	0.67	+0.0
3,107,601	-		SO2978	0.67	+0.3
3,107,616	+		SO2978	0.68	-0.3
3,107,675	+		SO2978	0.73	+0.3
3,107,708	-		SO2978	0.76	-0.3
3,107,800	-		SO2978	0.83	-1.2
3,107,865	-		SO2978	0.89	+0.7
3,107,895	-				+0.3
3,107,909	-				-0.5
3,108,081	+		SO2979	0.14	+0.1
3,108,081	+		SO2979	0.14	+0.1
3,108,081	+		SO2979	0.14	-0.0
3,108,089	-		SO2979	0.15	-0.3
3,108,089	-		SO2979	0.15	+0.2
3,108,089	-		SO2979	0.15	-0.6
3,108,115	+		SO2979	0.19	+0.9
3,108,123	-		SO2979	0.21	-0.3
3,108,303	-		SO2979	0.50	+0.1
3,108,307	+		SO2979	0.51	-0.5
3,108,312	+		SO2979	0.52	-0.1
3,108,313	-		SO2979	0.52	+0.5
3,108,313	-		SO2979	0.52	+0.3
3,108,315	-		SO2979	0.52	+0.8
3,108,320	-		SO2979	0.53	-0.8
3,108,327	-		SO2979	0.54	-0.2
3,108,340	+		SO2979	0.57	-0.7
3,108,340	+		SO2979	0.57	-1.3
3,108,348	-		SO2979	0.58	+1.1
3,108,492	-		SO2979	0.82	-0.4
3,108,510	+		SO2979	0.85	-0.3
3,108,520	+		SO2979	0.86	-0.3
3,108,523	-		SO2979	0.87	+0.0
3,108,566	-				+0.3
3,108,586	-				-0.3
3,108,684	+		SO2980	0.15	-0.1
3,108,695	+		SO2980	0.17	+1.1
3,108,696	+		SO2980	0.17	+1.2
3,108,788	+		SO2980	0.34	+0.6
3,108,900	+		SO2980	0.53	-0.0
3,108,900	+		SO2980	0.53	+0.5
3,108,922	+		SO2980	0.57	+0.5
3,108,930	-		SO2980	0.59	-0.0