Strain Fitness in Shewanella amazonensis SB2B around Sama_3591

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,222,587	+		Sama_3589	0.84	-0.1
4,222,587	+		Sama_3589	0.84	-2.4
4,222,587	+		Sama_3589	0.84	+0.3
4,222,587	+		Sama_3589	0.84	-0.3
4,222,587	+		Sama_3589	0.84	+0.4
4,222,587	+		Sama_3589	0.84	+0.1
4,222,588	-		Sama_3589	0.84	+0.5
4,222,588	-		Sama_3589	0.84	-0.4
4,222,588	-		Sama_3589	0.84	+0.4
4,222,588	-		Sama_3589	0.84	+0.2
4,222,588	-		Sama_3589	0.84	-0.6
4,222,588	-		Sama_3589	0.84	-1.3
4,222,588	-		Sama_3589	0.84	-0.4
4,222,603	-		Sama_3589	0.86	+0.3
4,222,657	+				+0.4
4,222,657	+				-0.6
4,222,657	+				+1.0
4,222,657	+				-0.2
4,222,658	-				-0.8
4,222,658	-				+0.7
4,222,731	+				-0.2
4,222,731	+				-1.0
4,222,732	-				-0.1
4,222,744	+				+0.5
4,222,744	+				+0.2
4,222,744	+				-0.4
4,222,745	-				+0.4
4,222,745	-				-1.3
4,222,768	+				+0.4
4,222,769	-				+0.1
4,222,769	-				+0.5
4,222,769	-				+0.3
4,222,769	-				+0.5
4,222,789	+				+0.3
4,222,789	+				+0.2
4,222,790	-				+0.2
4,222,790	-				+0.2
4,222,790	-				-1.1
4,222,832	+		Sama_3590	0.15	-0.3
4,222,985	+		Sama_3590	0.39	-0.3
4,222,985	+		Sama_3590	0.39	+0.4
4,222,985	+		Sama_3590	0.39	-0.6
4,222,985	+		Sama_3590	0.39	+0.7
4,222,985	+		Sama_3590	0.39	-0.8
4,222,986	-		Sama_3590	0.39	+0.5
4,222,986	-		Sama_3590	0.39	+1.0
4,222,986	-		Sama_3590	0.39	-0.0
4,222,986	-		Sama_3590	0.39	-1.1
4,222,986	-		Sama_3590	0.39	-1.7
4,222,986	-		Sama_3590	0.39	-0.3
4,222,986	-		Sama_3590	0.39	-0.5
4,222,986	-		Sama_3590	0.39	-0.0
4,222,986	-		Sama_3590	0.39	+1.1
4,222,986	-		Sama_3590	0.39	+1.5
4,222,986	-		Sama_3590	0.39	-0.6
4,223,046	-		Sama_3590	0.48	+0.7
4,223,054	+		Sama_3590	0.50	+0.5
4,223,055	-		Sama_3590	0.50	+0.8
4,223,097	+		Sama_3590	0.56	-1.3
4,223,097	+		Sama_3590	0.56	-1.0
4,223,097	+		Sama_3590	0.56	-0.1
4,223,097	+		Sama_3590	0.56	+0.6
4,223,097	+		Sama_3590	0.56	-0.3
4,223,097	+		Sama_3590	0.56	+2.5
4,223,097	+		Sama_3590	0.56	-1.5
4,223,097	+		Sama_3590	0.56	+0.1
4,223,098	-		Sama_3590	0.56	-0.8
4,223,098	-		Sama_3590	0.56	-0.9
4,223,098	-		Sama_3590	0.56	-0.7
4,223,098	-		Sama_3590	0.56	+0.2
4,223,098	-		Sama_3590	0.56	+0.0
4,223,098	-		Sama_3590	0.56	-0.0
4,223,098	-		Sama_3590	0.56	+0.5
4,223,174	+		Sama_3590	0.68	+0.6
4,223,223	+		Sama_3590	0.76	+0.5
4,223,223	+		Sama_3590	0.76	-0.2
4,223,224	-		Sama_3590	0.76	+0.8
4,223,224	-		Sama_3590	0.76	+0.3
4,223,224	-		Sama_3590	0.76	+0.6
4,223,290	-		Sama_3590	0.86	-0.1
4,223,290	-		Sama_3590	0.86	-0.1
4,223,303	-		Sama_3590	0.88	+0.5
4,223,312	+		Sama_3590	0.90	+0.3
4,223,312	+		Sama_3590	0.90	+0.1
4,223,313	-				-1.8
4,223,328	-				-0.1
4,223,328	-				-0.3
4,223,328	-				-0.6
4,223,377	+				-0.5
4,223,377	+				-0.7
4,223,378	-				+1.5
4,223,378	-				-1.2
4,223,378	-				-1.1
4,223,378	-				+0.7
4,223,411	+				-0.7
4,223,411	+				-1.2
4,223,411	+				+0.2
4,223,411	+				-0.7
4,223,411	+				-0.5
4,223,411	+				-0.3
4,223,411	+				-0.0
4,223,411	+				+0.0
4,223,411	+				-0.8
4,223,411	+				+0.2
4,223,411	+				+1.1
4,223,411	+				-1.1
4,223,411	+				-0.0
4,223,411	+				-0.2
4,223,411	+				-0.8
4,223,412	-				-0.3
4,223,412	-				+0.5
4,223,412	-				+0.5
4,223,412	-				-0.4
4,223,412	-				-0.2
4,223,414	+				+0.2
4,223,414	+				+0.3
4,223,414	+				+0.6
4,223,414	+				-0.3
4,223,414	+				-0.1
4,223,414	+				-0.4
4,223,414	+				+1.5
4,223,415	-				-0.5
4,223,415	-				-0.1
4,223,415	-				-0.3
4,223,415	-				+0.6
4,223,415	-				-0.2
4,223,415	-				-0.5
4,223,441	-				-1.5
4,223,465	+				-1.3
4,223,466	-				-0.1
4,223,466	-				-0.1
4,223,501	+				+0.5
4,223,502	-				-0.4
4,223,502	-				+0.1
4,223,502	-				-1.0
4,223,503	+				-0.6
4,223,504	-				-0.7
4,223,504	-				-0.1
4,223,504	-				-0.1
4,223,504	-				+0.6
4,223,504	-				+0.7
4,223,563	+				+0.5
4,223,563	+				+0.3
4,223,567	+				+0.0
4,223,567	+				-0.3
4,223,567	+				-0.4
4,223,567	+				+1.8
4,223,567	+				+0.2
4,223,567	+				-0.4
4,223,568	-				+0.2
4,223,602	+				+0.2
4,223,602	+				-1.1
4,223,602	+				-1.7
4,223,602	+				+0.4
4,223,602	+				-0.1
4,223,602	+				+0.1
4,223,602	+				-0.6
4,223,602	+				-0.2
4,223,603	-				-0.4
4,223,603	-				-1.3
4,223,603	-				-0.2
4,223,603	-				-0.3
4,223,603	-				+2.5
4,223,611	+				-2.0
4,223,611	+				+1.8
4,223,611	+				+0.6
4,223,611	+				-0.9
4,223,611	+				+0.5
4,223,611	+				-2.2
4,223,611	+				-0.3
4,223,612	-				-2.0
4,223,627	+		Sama_3591	0.13	+0.5
4,223,627	+		Sama_3591	0.13	+0.7
4,223,627	+		Sama_3591	0.13	-0.7
4,223,627	+		Sama_3591	0.13	-0.2
4,223,628	-		Sama_3591	0.14	+0.2
4,223,628	-		Sama_3591	0.14	-0.0
4,223,633	+		Sama_3591	0.15	+0.3
4,223,664	-		Sama_3591	0.26	-0.1
4,223,683	+		Sama_3591	0.32	+0.6
4,223,684	-		Sama_3591	0.32	-0.7
4,223,691	+		Sama_3591	0.35	-0.4
4,223,691	+		Sama_3591	0.35	+0.3
4,223,691	+		Sama_3591	0.35	+0.5
4,223,691	+		Sama_3591	0.35	+0.8
4,223,691	+		Sama_3591	0.35	+0.2
4,223,691	+		Sama_3591	0.35	-0.5
4,223,691	+		Sama_3591	0.35	+0.1
4,223,691	+		Sama_3591	0.35	+0.0
4,223,691	+		Sama_3591	0.35	+0.6
4,223,692	-		Sama_3591	0.35	-0.4
4,223,692	-		Sama_3591	0.35	+0.2
4,223,692	-		Sama_3591	0.35	+0.5
4,223,692	-		Sama_3591	0.35	-0.3
4,223,692	-		Sama_3591	0.35	-0.4
4,223,692	-		Sama_3591	0.35	-0.6
4,223,692	-		Sama_3591	0.35	+0.0
4,223,692	-		Sama_3591	0.35	+0.0
4,223,692	-		Sama_3591	0.35	-0.4
4,223,707	+		Sama_3591	0.40	+0.2
4,223,707	+		Sama_3591	0.40	-1.0
4,223,707	+		Sama_3591	0.40	+0.2
4,223,707	+		Sama_3591	0.40	-0.8
4,223,709	+		Sama_3591	0.41	+0.1
4,223,709	+		Sama_3591	0.41	-0.4
4,223,709	+		Sama_3591	0.41	-0.3
4,223,709	+		Sama_3591	0.41	+0.4
4,223,710	-		Sama_3591	0.41	+0.6
4,223,710	-		Sama_3591	0.41	+0.7
4,223,710	-		Sama_3591	0.41	-0.6
4,223,710	-		Sama_3591	0.41	-1.1
4,223,710	-		Sama_3591	0.41	+0.5
4,223,739	-		Sama_3591	0.51	+1.6
4,223,739	-		Sama_3591	0.51	-0.0
4,223,739	-		Sama_3591	0.51	+0.8
4,223,739	-		Sama_3591	0.51	-0.1
4,223,739	-		Sama_3591	0.51	+0.5
4,223,745	+		Sama_3591	0.53	+0.5
4,223,745	+		Sama_3591	0.53	-0.2
4,223,745	+		Sama_3591	0.53	+0.2
4,223,745	+		Sama_3591	0.53	+0.1
4,223,745	+		Sama_3591	0.53	-0.1
4,223,745	+		Sama_3591	0.53	+0.2
4,223,745	+		Sama_3591	0.53	-1.8
4,223,745	+		Sama_3591	0.53	+0.2
4,223,746	-		Sama_3591	0.53	+0.5
4,223,746	-		Sama_3591	0.53	+0.1
4,223,746	-		Sama_3591	0.53	+1.0
4,223,749	+		Sama_3591	0.54	+1.2
4,223,749	+		Sama_3591	0.54	+2.3
4,223,749	+		Sama_3591	0.54	+0.3
4,223,749	+		Sama_3591	0.54	+0.1
4,223,749	+		Sama_3591	0.54	+0.6
4,223,749	+		Sama_3591	0.54	+0.2
4,223,750	-		Sama_3591	0.54	+0.3
4,223,750	-		Sama_3591	0.54	+0.8
4,223,750	-		Sama_3591	0.54	+0.3
4,223,750	-		Sama_3591	0.54	-0.8
4,223,765	+		Sama_3591	0.59	-0.8
4,223,765	+		Sama_3591	0.59	+0.7
4,223,766	-		Sama_3591	0.60	+0.1
4,223,766	-		Sama_3591	0.60	-1.7
4,223,796	+		Sama_3591	0.70	-0.4
4,223,796	+		Sama_3591	0.70	+0.2
4,223,796	+		Sama_3591	0.70	+0.1
4,223,797	-		Sama_3591	0.70	+0.7
4,223,797	-		Sama_3591	0.70	+0.4
4,223,812	+		Sama_3591	0.75	+0.0
4,223,855	+		Sama_3591	0.89	+0.4
4,223,855	+		Sama_3591	0.89	+0.0
4,223,873	+				+0.7
4,223,873	+				+0.9
4,223,873	+				-0.4
4,223,874	-				+0.1
4,223,874	-				-1.8
4,223,874	-				+0.8
4,223,874	-				+0.1
4,223,919	+				+0.8
4,223,919	+				-0.5
4,223,919	+				+0.6
4,223,919	+				-0.5
4,223,919	+				+0.5
4,223,919	+				-1.1
4,223,919	+				-1.3
4,223,919	+				-0.1
4,223,920	-				+1.3
4,223,920	-				-1.1
4,223,920	-				-0.4
4,223,920	-				+0.1
4,223,973	-				-0.2
4,223,973	-				-0.1
4,223,998	+				-0.3
4,223,999	-				+0.2
4,224,024	+		Sama_3592	0.13	+0.8
4,224,024	+		Sama_3592	0.13	-0.0
4,224,039	-		Sama_3592	0.15	+0.3
4,224,145	+		Sama_3592	0.29	+0.6
4,224,145	+		Sama_3592	0.29	-0.2
4,224,145	+		Sama_3592	0.29	-0.8
4,224,145	+		Sama_3592	0.29	-0.3
4,224,145	+		Sama_3592	0.29	-0.1
4,224,145	+		Sama_3592	0.29	+0.7
4,224,145	+		Sama_3592	0.29	+0.2
4,224,145	+		Sama_3592	0.29	-0.4
4,224,145	+		Sama_3592	0.29	-1.3
4,224,145	+		Sama_3592	0.29	+0.3
4,224,146	-		Sama_3592	0.29	-0.1
4,224,146	-		Sama_3592	0.29	+1.5
4,224,146	-		Sama_3592	0.29	-0.3
4,224,146	-		Sama_3592	0.29	-1.3
4,224,146	-		Sama_3592	0.29	-0.7
4,224,146	-		Sama_3592	0.29	+0.0
4,224,146	-		Sama_3592	0.29	+1.2
4,224,160	+		Sama_3592	0.31	-0.4
4,224,160	+		Sama_3592	0.31	-0.8
4,224,160	+		Sama_3592	0.31	-0.8
4,224,160	+		Sama_3592	0.31	+0.8
4,224,160	+		Sama_3592	0.31	-1.3
4,224,161	-		Sama_3592	0.31	+0.5
4,224,161	-		Sama_3592	0.31	-2.0
4,224,161	-		Sama_3592	0.31	-0.0
4,224,161	-		Sama_3592	0.31	-1.1
4,224,163	+		Sama_3592	0.32	-0.3
4,224,163	+		Sama_3592	0.32	+0.2
4,224,163	+		Sama_3592	0.32	-0.5
4,224,163	+		Sama_3592	0.32	-0.6
4,224,265	+		Sama_3592	0.45	+0.1
4,224,265	+		Sama_3592	0.45	-0.2
4,224,266	-		Sama_3592	0.45	+0.6
4,224,266	-		Sama_3592	0.45	+0.0
4,224,266	-		Sama_3592	0.45	+0.6
4,224,266	-		Sama_3592	0.45	-0.7
4,224,285	+		Sama_3592	0.48	-0.4
4,224,285	+		Sama_3592	0.48	-0.4
4,224,285	+		Sama_3592	0.48	-0.5
4,224,286	-		Sama_3592	0.48	-0.3
4,224,286	-		Sama_3592	0.48	-0.1
4,224,286	-		Sama_3592	0.48	-0.8
4,224,286	-		Sama_3592	0.48	-0.7
4,224,286	-		Sama_3592	0.48	+0.2
4,224,368	-		Sama_3592	0.59	+0.3
4,224,368	-		Sama_3592	0.59	-0.2
4,224,385	+		Sama_3592	0.61	+1.3
4,224,386	-		Sama_3592	0.61	+0.2
4,224,386	-		Sama_3592	0.61	-0.8
4,224,386	-		Sama_3592	0.61	+1.3
4,224,387	-		Sama_3592	0.61	-0.2
4,224,392	+		Sama_3592	0.62	+0.6
4,224,392	+		Sama_3592	0.62	+0.5
4,224,392	+		Sama_3592	0.62	+0.7
4,224,393	-		Sama_3592	0.62	+0.5
4,224,393	-		Sama_3592	0.62	+1.0
4,224,393	-		Sama_3592	0.62	-0.4
4,224,432	+		Sama_3592	0.67	-0.9
4,224,438	+		Sama_3592	0.68	-0.1
4,224,438	+		Sama_3592	0.68	-0.2
4,224,438	+		Sama_3592	0.68	-0.2
4,224,438	+		Sama_3592	0.68	-0.1
4,224,439	-		Sama_3592	0.68	+1.5
4,224,439	-		Sama_3592	0.68	+1.0
4,224,450	+		Sama_3592	0.70	-0.1
4,224,450	+		Sama_3592	0.70	-0.4
4,224,450	+		Sama_3592	0.70	+0.6
4,224,473	+		Sama_3592	0.73	+0.2
4,224,502	+		Sama_3592	0.77	-1.7
4,224,502	+		Sama_3592	0.77	+0.6
4,224,502	+		Sama_3592	0.77	+0.7
4,224,503	-		Sama_3592	0.77	-0.3
4,224,503	-		Sama_3592	0.77	-1.0
4,224,503	-		Sama_3592	0.77	+0.6
4,224,563	+		Sama_3592	0.85	-0.1
4,224,564	-		Sama_3592	0.85	-0.1
4,224,564	-		Sama_3592	0.85	+0.2
4,224,609	+				-1.5
4,224,609	+				-0.3
4,224,609	+				-0.1
4,224,610	-				+0.3
4,224,610	-				+0.5
4,224,610	-				-1.1
4,224,613	-				+0.7
4,224,613	-				-0.8
4,224,657	-				-0.8
4,224,657	-				-0.4
4,224,694	+				-0.7
4,224,695	-				+0.2
4,224,695	-				+0.2
4,224,695	-				+0.2
4,224,695	-				+0.0
4,224,709	-				+0.8
4,224,709	-				+0.5
4,224,784	+				+0.6
4,224,791	+				-0.4
4,224,791	+				-0.8
4,224,791	+				-1.2
4,224,791	+				-0.2
4,224,791	+				+0.1
4,224,791	+				+1.1
4,224,791	+				+0.6
4,224,792	-				-0.1
4,224,792	-				-0.1
4,224,792	-				+0.1
4,224,792	-				-1.1
4,224,824	+				+0.2
4,224,824	+				+0.3
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4,224,826	+				-1.1
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4,224,826	+				-1.6
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4,224,827	-				+0.5
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4,224,836	+				-1.2
4,224,837	-				-0.6
4,224,837	-				+0.9