Strain Fitness in Shewanella amazonensis SB2B around Sama_3489

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,119,718	+				+0.9
4,119,718	+				+0.7
4,119,718	+				-0.8
4,119,718	+				-0.2
4,119,719	-				-0.1
4,119,719	-				+0.5
4,119,719	-				+0.2
4,119,719	-				+0.8
4,119,728	-				-0.2
4,119,728	-				-0.6
4,119,728	-				+0.4
4,119,728	-				-0.1
4,119,728	-				+0.3
4,119,747	+		Sama_3487	0.11	+0.5
4,119,748	-		Sama_3487	0.12	-0.3
4,119,783	+		Sama_3487	0.28	+0.9
4,119,783	+		Sama_3487	0.28	-0.3
4,119,783	+		Sama_3487	0.28	-1.2
4,119,783	+		Sama_3487	0.28	+0.4
4,119,783	+		Sama_3487	0.28	-0.2
4,119,784	-		Sama_3487	0.28	-0.7
4,119,784	-		Sama_3487	0.28	-0.9
4,119,784	-		Sama_3487	0.28	-0.0
4,119,820	+		Sama_3487	0.45	+1.3
4,119,862	+		Sama_3487	0.64	-0.2
4,119,862	+		Sama_3487	0.64	+0.1
4,119,862	+		Sama_3487	0.64	+0.9
4,119,862	+		Sama_3487	0.64	-0.5
4,119,863	-		Sama_3487	0.65	+0.2
4,119,863	-		Sama_3487	0.65	+0.2
4,119,863	-		Sama_3487	0.65	-0.2
4,119,863	-		Sama_3487	0.65	+0.4
4,119,863	-		Sama_3487	0.65	-0.1
4,119,863	-		Sama_3487	0.65	+1.6
4,119,863	-		Sama_3487	0.65	+0.2
4,119,863	-		Sama_3487	0.65	-0.0
4,119,863	-		Sama_3487	0.65	+0.3
4,119,907	-		Sama_3487	0.85	+0.3
4,119,907	-		Sama_3487	0.85	-0.1
4,119,907	-		Sama_3487	0.85	+0.5
4,119,920	+				-0.4
4,119,986	+				+1.3
4,119,986	+				+0.0
4,119,987	-				+0.3
4,120,157	-		Sama_3488	0.25	+0.3
4,120,157	-		Sama_3488	0.25	-1.1
4,120,193	+		Sama_3488	0.30	-0.1
4,120,193	+		Sama_3488	0.30	-0.2
4,120,193	+		Sama_3488	0.30	+0.5
4,120,193	+		Sama_3488	0.30	+0.1
4,120,194	-		Sama_3488	0.30	-0.2
4,120,194	-		Sama_3488	0.30	+0.4
4,120,194	-		Sama_3488	0.30	-0.1
4,120,194	-		Sama_3488	0.30	-0.0
4,120,194	-		Sama_3488	0.30	-0.1
4,120,194	-		Sama_3488	0.30	-1.9
4,120,237	+		Sama_3488	0.36	+0.5
4,120,237	+		Sama_3488	0.36	+0.3
4,120,237	+		Sama_3488	0.36	+0.3
4,120,237	+		Sama_3488	0.36	-0.4
4,120,237	+		Sama_3488	0.36	+0.3
4,120,237	+		Sama_3488	0.36	+0.2
4,120,237	+		Sama_3488	0.36	+0.5
4,120,237	+		Sama_3488	0.36	-0.3
4,120,238	-		Sama_3488	0.36	-0.5
4,120,238	-		Sama_3488	0.36	+1.2
4,120,238	-		Sama_3488	0.36	-0.4
4,120,238	-		Sama_3488	0.36	-0.0
4,120,238	-		Sama_3488	0.36	-0.9
4,120,238	-		Sama_3488	0.36	-0.6
4,120,238	-		Sama_3488	0.36	-0.1
4,120,238	-		Sama_3488	0.36	-0.2
4,120,238	-		Sama_3488	0.36	+0.5
4,120,239	+		Sama_3488	0.36	-0.1
4,120,239	+		Sama_3488	0.36	+0.9
4,120,239	+		Sama_3488	0.36	+0.2
4,120,239	+		Sama_3488	0.36	+0.4
4,120,239	+		Sama_3488	0.36	+0.7
4,120,239	+		Sama_3488	0.36	-0.7
4,120,239	+		Sama_3488	0.36	-0.3
4,120,239	+		Sama_3488	0.36	-0.5
4,120,239	+		Sama_3488	0.36	+0.5
4,120,239	+		Sama_3488	0.36	-0.5
4,120,239	+		Sama_3488	0.36	+0.2
4,120,239	+		Sama_3488	0.36	-0.1
4,120,239	+		Sama_3488	0.36	+0.4
4,120,239	+		Sama_3488	0.36	+0.7
4,120,239	+		Sama_3488	0.36	-1.0
4,120,239	+		Sama_3488	0.36	-0.2
4,120,239	+		Sama_3488	0.36	+0.2
4,120,240	-		Sama_3488	0.37	+0.8
4,120,240	-		Sama_3488	0.37	+0.1
4,120,240	-		Sama_3488	0.37	-0.4
4,120,240	-		Sama_3488	0.37	+0.3
4,120,240	-		Sama_3488	0.37	+0.3
4,120,240	-		Sama_3488	0.37	-1.6
4,120,240	-		Sama_3488	0.37	-0.6
4,120,240	-		Sama_3488	0.37	+0.3
4,120,240	-		Sama_3488	0.37	+0.2
4,120,240	-		Sama_3488	0.37	-0.7
4,120,240	-		Sama_3488	0.37	+0.3
4,120,240	-		Sama_3488	0.37	-1.1
4,120,240	-		Sama_3488	0.37	-0.6
4,120,240	-		Sama_3488	0.37	+0.5
4,120,240	-		Sama_3488	0.37	-0.3
4,120,240	-		Sama_3488	0.37	+0.8
4,120,240	-		Sama_3488	0.37	+0.2
4,120,240	-		Sama_3488	0.37	+0.9
4,120,361	+		Sama_3488	0.54	-0.1
4,120,361	+		Sama_3488	0.54	+0.0
4,120,362	-		Sama_3488	0.54	-0.4
4,120,362	-		Sama_3488	0.54	+0.2
4,120,362	-		Sama_3488	0.54	+0.1
4,120,362	-		Sama_3488	0.54	-0.2
4,120,381	+		Sama_3488	0.57	-0.8
4,120,460	+		Sama_3488	0.68	-0.7
4,120,460	+		Sama_3488	0.68	-0.8
4,120,460	+		Sama_3488	0.68	-0.1
4,120,460	+		Sama_3488	0.68	-0.1
4,120,461	-		Sama_3488	0.68	+0.9
4,120,461	-		Sama_3488	0.68	-0.8
4,120,496	+		Sama_3488	0.73	-0.4
4,120,496	+		Sama_3488	0.73	+0.1
4,120,508	+		Sama_3488	0.75	-0.3
4,120,508	+		Sama_3488	0.75	-0.6
4,120,509	-		Sama_3488	0.75	-0.7
4,120,539	-		Sama_3488	0.79	+0.7
4,120,563	+		Sama_3488	0.82	-0.8
4,120,563	+		Sama_3488	0.82	-0.8
4,120,563	+		Sama_3488	0.82	+0.2
4,120,563	+		Sama_3488	0.82	-0.1
4,120,564	-		Sama_3488	0.83	-0.5
4,120,629	-				+0.3
4,120,629	-				-1.1
4,120,629	-				-1.0
4,120,642	+				+0.4
4,120,642	+				-0.3
4,120,643	-				-0.4
4,120,684	+				+0.9
4,120,685	-				-0.7
4,120,685	-				+0.6
4,120,685	-				+1.1
4,120,685	-				-1.8
4,120,685	-				-1.7
4,120,694	+				-1.1
4,120,694	+				-0.5
4,120,694	+				-0.8
4,120,694	+				+0.4
4,120,694	+				+0.3
4,120,695	-				-0.3
4,120,695	-				-0.3
4,120,695	-				-0.5
4,120,695	-				+0.0
4,120,695	-				+0.1
4,120,695	-				-0.3
4,120,695	-				-0.7
4,120,695	-				+0.3
4,120,695	-				+0.7
4,120,695	-				-0.5
4,120,700	+				-0.7
4,120,700	+				+0.9
4,120,701	-				+0.8
4,120,750	+				-0.8
4,120,750	+				+0.6
4,120,750	+				-0.1
4,120,750	+				+0.6
4,120,750	+				-0.8
4,120,750	+				-0.4
4,120,750	+				-0.2
4,120,751	-				-0.7
4,120,751	-				+0.5
4,120,751	-				-1.4
4,120,751	-				+0.6
4,120,751	-				+0.2
4,120,751	-				+1.9
4,120,751	-				-0.2
4,120,751	-				-0.2
4,120,751	-				-1.1
4,120,751	-				-1.1
4,120,751	-				+0.7
4,120,770	+		Sama_3489	0.10	+0.8
4,120,814	+		Sama_3489	0.18	+0.9
4,120,815	-		Sama_3489	0.18	+1.2
4,120,815	-		Sama_3489	0.18	+0.1
4,120,865	+		Sama_3489	0.28	+0.8
4,120,865	+		Sama_3489	0.28	+0.5
4,120,865	+		Sama_3489	0.28	+0.2
4,120,866	-		Sama_3489	0.28	+1.9
4,120,916	+		Sama_3489	0.37	+0.6
4,120,916	+		Sama_3489	0.37	+0.3
4,120,917	-		Sama_3489	0.37	+0.2
4,120,917	-		Sama_3489	0.37	+0.0
4,120,961	+		Sama_3489	0.45	+0.4
4,120,961	+		Sama_3489	0.45	+0.5
4,120,961	+		Sama_3489	0.45	-0.1
4,120,961	+		Sama_3489	0.45	-0.7
4,120,961	+		Sama_3489	0.45	+0.1
4,120,961	+		Sama_3489	0.45	-0.4
4,120,961	+		Sama_3489	0.45	+0.4
4,120,961	+		Sama_3489	0.45	+0.0
4,120,961	+		Sama_3489	0.45	-0.4
4,120,961	+		Sama_3489	0.45	-0.4
4,120,961	+		Sama_3489	0.45	+1.1
4,120,962	-		Sama_3489	0.45	+0.1
4,120,962	-		Sama_3489	0.45	+0.5
4,120,962	-		Sama_3489	0.45	+0.1
4,120,962	-		Sama_3489	0.45	-1.5
4,120,962	-		Sama_3489	0.45	-1.0
4,120,962	-		Sama_3489	0.45	-0.7
4,120,962	-		Sama_3489	0.45	+0.5
4,121,012	-		Sama_3489	0.55	-0.0
4,121,125	+		Sama_3489	0.76	+0.5
4,121,126	-		Sama_3489	0.76	+0.4
4,121,126	-		Sama_3489	0.76	+1.5
4,121,191	+		Sama_3489	0.88	-0.5
4,121,192	-		Sama_3489	0.88	-1.1
4,121,227	+				+0.5
4,121,227	+				-0.4
4,121,228	-				+0.6
4,121,228	-				-1.2
4,121,236	+				-0.2
4,121,236	+				-0.6
4,121,237	-				-0.1
4,121,237	-				+0.6
4,121,323	+				-0.1
4,121,323	+				-1.2
4,121,323	+				-0.5
4,121,323	+				+0.6
4,121,324	-				+0.6
4,121,324	-				+0.1
4,121,324	-				-1.1
4,121,324	-				-0.0
4,121,324	-				-0.2
4,121,324	-				+0.0
4,121,325	+				+1.3
4,121,325	+				+1.0
4,121,325	+				+0.2
4,121,326	-				+0.7
4,121,326	-				-0.2
4,121,374	+		Sama_3490	0.12	-0.1
4,121,375	-		Sama_3490	0.12	-0.4
4,121,375	-		Sama_3490	0.12	+1.3
4,121,375	-		Sama_3490	0.12	+0.6
4,121,375	-		Sama_3490	0.12	+0.9
4,121,385	+		Sama_3490	0.13	-0.7
4,121,385	+		Sama_3490	0.13	-0.6
4,121,386	-		Sama_3490	0.13	+0.2
4,121,442	+		Sama_3490	0.19	+0.1
4,121,442	+		Sama_3490	0.19	+0.5
4,121,443	-		Sama_3490	0.19	+0.1
4,121,443	-		Sama_3490	0.19	-0.0
4,121,443	-		Sama_3490	0.19	-1.2
4,121,443	-		Sama_3490	0.19	+2.5
4,121,443	-		Sama_3490	0.19	-0.1
4,121,485	+		Sama_3490	0.23	+0.7
4,121,485	+		Sama_3490	0.23	-0.1
4,121,486	-		Sama_3490	0.23	+0.5
4,121,486	-		Sama_3490	0.23	-0.3
4,121,486	-		Sama_3490	0.23	-0.1
4,121,486	-		Sama_3490	0.23	-0.4
4,121,507	+		Sama_3490	0.25	+0.2
4,121,507	+		Sama_3490	0.25	-0.3
4,121,508	-		Sama_3490	0.26	+2.5
4,121,528	+		Sama_3490	0.28	+0.0
4,121,528	+		Sama_3490	0.28	-0.3
4,121,529	-		Sama_3490	0.28	-0.4
4,121,529	-		Sama_3490	0.28	+1.6
4,121,529	-		Sama_3490	0.28	-0.6
4,121,536	+		Sama_3490	0.28	-1.1
4,121,570	+		Sama_3490	0.32	+0.2
4,121,570	+		Sama_3490	0.32	+0.1
4,121,570	+		Sama_3490	0.32	+0.1
4,121,570	+		Sama_3490	0.32	+1.0
4,121,571	-		Sama_3490	0.32	+0.2
4,121,571	-		Sama_3490	0.32	+0.7
4,121,571	-		Sama_3490	0.32	-0.4
4,121,571	-		Sama_3490	0.32	-0.1
4,121,571	-		Sama_3490	0.32	+0.5
4,121,574	+		Sama_3490	0.32	+0.6
4,121,574	+		Sama_3490	0.32	-0.1
4,121,575	-		Sama_3490	0.32	-0.3
4,121,575	-		Sama_3490	0.32	+0.3
4,121,645	+		Sama_3490	0.39	-0.6
4,121,645	+		Sama_3490	0.39	+0.4
4,121,646	-		Sama_3490	0.40	+0.4
4,121,646	-		Sama_3490	0.40	+0.8
4,121,646	-		Sama_3490	0.40	-0.4
4,121,673	+		Sama_3490	0.42	-0.6
4,121,674	-		Sama_3490	0.42	-0.2
4,121,678	+		Sama_3490	0.43	+3.8
4,121,678	+		Sama_3490	0.43	+0.5
4,121,680	-		Sama_3490	0.43	+1.5
4,121,701	+		Sama_3490	0.45	-0.5
4,121,701	+		Sama_3490	0.45	+1.1
4,121,701	+		Sama_3490	0.45	+1.1
4,121,702	-		Sama_3490	0.45	-0.4
4,121,702	-		Sama_3490	0.45	-0.0
4,121,755	+		Sama_3490	0.51	-0.8
4,121,756	-		Sama_3490	0.51	-2.1
4,121,922	+		Sama_3490	0.68	-0.1
4,121,923	-		Sama_3490	0.68	+1.2
4,121,957	-		Sama_3490	0.71	-0.1
4,121,957	-		Sama_3490	0.71	-0.6
4,121,957	-		Sama_3490	0.71	+0.5
4,121,975	+		Sama_3490	0.73	+0.3
4,121,975	+		Sama_3490	0.73	+0.4
4,121,975	+		Sama_3490	0.73	-0.6
4,121,975	+		Sama_3490	0.73	-1.9
4,121,975	+		Sama_3490	0.73	-0.2
4,121,975	+		Sama_3490	0.73	+0.1
4,121,975	+		Sama_3490	0.73	-0.8
4,121,975	+		Sama_3490	0.73	-0.6
4,121,976	-		Sama_3490	0.73	-0.4
4,121,976	-		Sama_3490	0.73	+0.8
4,121,976	-		Sama_3490	0.73	-0.2
4,121,976	-		Sama_3490	0.73	-1.2
4,121,976	-		Sama_3490	0.73	+0.1
4,121,976	-		Sama_3490	0.73	+0.2
4,121,976	-		Sama_3490	0.73	+1.1
4,121,976	-		Sama_3490	0.73	-0.5
4,121,976	-		Sama_3490	0.73	-0.2
4,122,006	+		Sama_3490	0.76	+0.3
4,122,044	+		Sama_3490	0.80	-0.1
4,122,044	+		Sama_3490	0.80	+0.3
4,122,057	+		Sama_3490	0.81	-0.2
4,122,058	-		Sama_3490	0.81	-0.2
4,122,058	-		Sama_3490	0.81	-2.0
4,122,058	-		Sama_3490	0.81	+1.5
4,122,058	-		Sama_3490	0.81	+0.0
4,122,123	+		Sama_3490	0.88	+0.1
4,122,210	+				-1.1
4,122,211	-				+0.7
4,122,211	-				+2.5
4,122,211	-				-0.0
4,122,213	+				-0.3
4,122,213	+				+0.5
4,122,213	+				-0.7
4,122,213	+				+0.1
4,122,217	+				-0.8
4,122,217	+				+0.3
4,122,217	+				+0.7
4,122,217	+				-1.3
4,122,218	-				-1.2
4,122,218	-				-0.0
4,122,231	+				-0.3
4,122,232	-				+0.4
4,122,232	-				-0.5
4,122,254	+				-0.1
4,122,254	+				-0.7
4,122,255	-				+0.3
4,122,255	-				-0.1