Strain Fitness in Shewanella amazonensis SB2B around Sama_3429

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,058,383	-				-1.3
4,058,383	-				-0.3
4,058,394	+				-1.9
4,058,395	-				+0.5
4,058,431	-				-0.9
4,058,471	-				-0.1
4,058,471	-				+0.2
4,058,566	+				+0.2
4,058,567	-				+0.0
4,058,567	-				-1.8
4,058,567	-				-0.2
4,058,567	-				-0.4
4,058,593	+		Sama_3428	0.10	+0.2
4,058,593	+		Sama_3428	0.10	-0.1
4,058,593	+		Sama_3428	0.10	-0.9
4,058,593	+		Sama_3428	0.10	-0.7
4,058,594	-		Sama_3428	0.10	+1.5
4,058,594	-		Sama_3428	0.10	+0.2
4,058,594	-		Sama_3428	0.10	+0.5
4,058,594	-		Sama_3428	0.10	-0.4
4,058,638	+		Sama_3428	0.18	-1.2
4,058,638	+		Sama_3428	0.18	-0.0
4,058,638	+		Sama_3428	0.18	-0.1
4,058,639	-		Sama_3428	0.18	-0.6
4,058,639	-		Sama_3428	0.18	+0.0
4,058,639	-		Sama_3428	0.18	-0.5
4,058,639	-		Sama_3428	0.18	-0.5
4,058,643	+		Sama_3428	0.19	-1.3
4,058,644	-		Sama_3428	0.19	+0.4
4,058,675	+		Sama_3428	0.25	-0.1
4,058,675	+		Sama_3428	0.25	-0.6
4,058,675	+		Sama_3428	0.25	-0.9
4,058,676	-		Sama_3428	0.25	-0.2
4,058,676	-		Sama_3428	0.25	+0.1
4,058,679	+		Sama_3428	0.26	+0.4
4,058,679	+		Sama_3428	0.26	-0.5
4,058,679	+		Sama_3428	0.26	+0.4
4,058,679	+		Sama_3428	0.26	-1.1
4,058,679	+		Sama_3428	0.26	+0.3
4,058,680	-		Sama_3428	0.26	-0.3
4,058,680	-		Sama_3428	0.26	+0.6
4,058,680	-		Sama_3428	0.26	-0.3
4,058,680	-		Sama_3428	0.26	-0.1
4,058,680	-		Sama_3428	0.26	+0.2
4,058,680	-		Sama_3428	0.26	-1.4
4,058,699	-		Sama_3428	0.29	-0.8
4,058,713	+		Sama_3428	0.32	+0.1
4,058,713	+		Sama_3428	0.32	+0.3
4,058,713	+		Sama_3428	0.32	+0.0
4,058,713	+		Sama_3428	0.32	+0.5
4,058,714	-		Sama_3428	0.32	+0.1
4,058,752	+		Sama_3428	0.39	+0.1
4,058,752	+		Sama_3428	0.39	+0.9
4,058,753	-		Sama_3428	0.39	-1.3
4,058,753	-		Sama_3428	0.39	+1.1
4,058,753	-		Sama_3428	0.39	-0.8
4,058,773	+		Sama_3428	0.43	-1.1
4,058,773	+		Sama_3428	0.43	+0.0
4,058,773	+		Sama_3428	0.43	-0.1
4,058,773	+		Sama_3428	0.43	-0.1
4,058,774	-		Sama_3428	0.43	+0.7
4,058,774	-		Sama_3428	0.43	+1.5
4,058,774	-		Sama_3428	0.43	+0.4
4,058,774	-		Sama_3428	0.43	-0.2
4,058,774	-		Sama_3428	0.43	-0.4
4,058,774	-		Sama_3428	0.43	-0.7
4,058,774	-		Sama_3428	0.43	-0.7
4,058,856	-		Sama_3428	0.58	+1.1
4,058,910	-		Sama_3428	0.68	-0.4
4,058,910	-		Sama_3428	0.68	+0.7
4,058,920	+		Sama_3428	0.70	-0.1
4,058,963	+		Sama_3428	0.78	-0.7
4,059,132	+				-0.9
4,059,133	-				+0.5
4,059,159	-				-0.4
4,059,165	+				-0.3
4,059,165	+				+0.1
4,059,165	+				-0.5
4,059,188	+				+1.0
4,059,188	+				+0.3
4,059,188	+				+0.0
4,059,189	-				-0.6
4,059,189	-				+0.3
4,059,218	-				+0.6
4,059,237	+				+0.5
4,059,237	+				+0.3
4,059,237	+				-0.1
4,059,237	+				-0.2
4,059,238	-				+0.6
4,059,238	-				+0.4
4,059,238	-				-0.4
4,059,269	+				-0.7
4,059,310	-				+1.4
4,059,310	-				+0.7
4,059,329	+				+0.5
4,059,329	+				+1.5
4,059,349	+				-0.1
4,059,403	+		Sama_3429	0.11	-0.5
4,059,403	+		Sama_3429	0.11	-0.0
4,059,403	+		Sama_3429	0.11	-0.8
4,059,403	+		Sama_3429	0.11	-0.9
4,059,404	-		Sama_3429	0.11	-1.2
4,059,404	-		Sama_3429	0.11	-1.0
4,059,404	-		Sama_3429	0.11	+0.5
4,059,404	-		Sama_3429	0.11	+0.1
4,059,404	-		Sama_3429	0.11	+0.2
4,059,404	-		Sama_3429	0.11	-0.6
4,059,404	-		Sama_3429	0.11	-0.8
4,059,404	-		Sama_3429	0.11	+1.2
4,059,407	-		Sama_3429	0.12	-1.7
4,059,407	-		Sama_3429	0.12	-0.5
4,059,407	-		Sama_3429	0.12	-0.1
4,059,407	-		Sama_3429	0.12	-0.6
4,059,460	+		Sama_3429	0.21	+1.2
4,059,460	+		Sama_3429	0.21	+0.5
4,059,460	+		Sama_3429	0.21	+0.1
4,059,461	-		Sama_3429	0.21	+0.9
4,059,461	-		Sama_3429	0.21	-0.5
4,059,461	-		Sama_3429	0.21	-0.0
4,059,461	-		Sama_3429	0.21	-0.7
4,059,507	+		Sama_3429	0.29	-1.1
4,059,507	+		Sama_3429	0.29	-0.7
4,059,508	-		Sama_3429	0.30	+0.0
4,059,519	+		Sama_3429	0.32	-1.7
4,059,535	+		Sama_3429	0.34	-0.2
4,059,536	-		Sama_3429	0.35	-0.3
4,059,557	-		Sama_3429	0.38	+0.8
4,059,557	-		Sama_3429	0.38	-0.5
4,059,557	-		Sama_3429	0.38	-0.4
4,059,557	-		Sama_3429	0.38	-0.5
4,059,557	-		Sama_3429	0.38	+0.5
4,059,611	+		Sama_3429	0.48	-1.2
4,059,611	+		Sama_3429	0.48	-1.3
4,059,611	+		Sama_3429	0.48	-0.1
4,059,611	+		Sama_3429	0.48	-0.1
4,059,612	-		Sama_3429	0.48	+0.5
4,059,612	-		Sama_3429	0.48	-0.8
4,059,625	+		Sama_3429	0.50	-0.3
4,059,625	+		Sama_3429	0.50	-0.4
4,059,625	+		Sama_3429	0.50	-0.9
4,059,625	+		Sama_3429	0.50	+0.3
4,059,625	+		Sama_3429	0.50	-1.1
4,059,625	+		Sama_3429	0.50	+0.3
4,059,626	-		Sama_3429	0.50	-0.9
4,059,626	-		Sama_3429	0.50	+0.5
4,059,629	+		Sama_3429	0.51	-0.2
4,059,630	-		Sama_3429	0.51	-0.2
4,059,740	-		Sama_3429	0.70	-0.7
4,059,740	-		Sama_3429	0.70	-1.6
4,059,749	-		Sama_3429	0.72	+1.0
4,059,763	-		Sama_3429	0.74	+0.9
4,059,826	+		Sama_3429	0.85	-0.0
4,059,826	+		Sama_3429	0.85	+0.3
4,059,826	+		Sama_3429	0.85	+0.3
4,059,826	+		Sama_3429	0.85	+0.3
4,059,827	-		Sama_3429	0.86	-0.8
4,059,827	-		Sama_3429	0.86	-1.9
4,059,939	-				-0.9
4,059,939	-				-0.1
4,059,984	-				-0.1
4,059,989	+				-1.3
4,059,989	+				+1.2
4,059,989	+				+0.1
4,059,989	+				+1.3
4,059,990	-				-0.6
4,059,990	-				+0.6
4,059,990	-				-1.1
4,059,990	-				-0.3
4,059,990	-				-0.1
4,059,995	-				-0.1
4,059,995	-				-0.9
4,060,018	+				+0.1
4,060,018	+				-0.6
4,060,019	-				+0.7
4,060,028	+				-0.5
4,060,091	+				+0.5
4,060,091	+				+0.1
4,060,092	-				-0.8
4,060,092	-				-0.2
4,060,092	-				-0.1
4,060,144	-				-0.2
4,060,221	+		Sama_3430	0.15	-0.4
4,060,222	-		Sama_3430	0.15	-0.7
4,060,222	-		Sama_3430	0.15	-0.2
4,060,227	+		Sama_3430	0.16	-0.5
4,060,227	+		Sama_3430	0.16	+0.4
4,060,227	+		Sama_3430	0.16	-2.4
4,060,227	+		Sama_3430	0.16	+2.3
4,060,228	-		Sama_3430	0.16	-0.8
4,060,228	-		Sama_3430	0.16	-0.3
4,060,228	-		Sama_3430	0.16	-0.6
4,060,228	-		Sama_3430	0.16	+0.1
4,060,228	-		Sama_3430	0.16	-0.2
4,060,386	+		Sama_3430	0.34	+0.8
4,060,387	-		Sama_3430	0.34	+1.5
4,060,388	+		Sama_3430	0.34	+0.1
4,060,388	+		Sama_3430	0.34	-0.4
4,060,388	+		Sama_3430	0.34	+1.8
4,060,388	+		Sama_3430	0.34	+0.5
4,060,388	+		Sama_3430	0.34	+0.9
4,060,388	+		Sama_3430	0.34	-0.7
4,060,388	+		Sama_3430	0.34	+0.5
4,060,388	+		Sama_3430	0.34	+0.1
4,060,388	+		Sama_3430	0.34	-0.1
4,060,388	+		Sama_3430	0.34	+0.0
4,060,388	+		Sama_3430	0.34	-0.0
4,060,389	-		Sama_3430	0.34	+0.1
4,060,389	-		Sama_3430	0.34	+0.2
4,060,389	-		Sama_3430	0.34	-0.4
4,060,389	-		Sama_3430	0.34	-1.3
4,060,389	-		Sama_3430	0.34	+0.0
4,060,389	-		Sama_3430	0.34	-0.0
4,060,389	-		Sama_3430	0.34	+0.1
4,060,389	-		Sama_3430	0.34	-0.1
4,060,389	-		Sama_3430	0.34	+0.5
4,060,389	-		Sama_3430	0.34	-2.0
4,060,389	-		Sama_3430	0.34	+0.3
4,060,389	-		Sama_3430	0.34	-0.6
4,060,389	-		Sama_3430	0.34	-0.5
4,060,396	+		Sama_3430	0.35	-0.5
4,060,436	+		Sama_3430	0.40	-1.3
4,060,437	-		Sama_3430	0.40	-1.0
4,060,493	+		Sama_3430	0.46	-0.4
4,060,493	+		Sama_3430	0.46	-0.5
4,060,493	+		Sama_3430	0.46	+0.7
4,060,493	+		Sama_3430	0.46	+0.6
4,060,494	-		Sama_3430	0.46	-0.5
4,060,494	-		Sama_3430	0.46	-0.1
4,060,494	-		Sama_3430	0.46	+0.3
4,060,494	-		Sama_3430	0.46	-0.1
4,060,494	-		Sama_3430	0.46	-0.1
4,060,494	-		Sama_3430	0.46	+0.3
4,060,494	-		Sama_3430	0.46	+0.1
4,060,494	-		Sama_3430	0.46	-0.2
4,060,552	+		Sama_3430	0.53	+0.6
4,060,553	-		Sama_3430	0.53	+0.3
4,060,603	-		Sama_3430	0.59	-0.4
4,060,726	-		Sama_3430	0.73	-0.2
4,060,824	+		Sama_3430	0.84	+0.8
4,060,839	+		Sama_3430	0.86	+0.2
4,060,839	+		Sama_3430	0.86	+0.2
4,060,840	-		Sama_3430	0.86	+0.1
4,060,876	+				+0.5
4,060,877	-				+0.1