Strain Fitness in Shewanella amazonensis SB2B around Sama_3385

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
4,011,258	+		Sama_3384	0.46	-1.0
4,011,259	-		Sama_3384	0.46	+2.4
4,011,288	+		Sama_3384	0.48	-0.6
4,011,327	+		Sama_3384	0.50	+0.1
4,011,327	+		Sama_3384	0.50	-1.1
4,011,328	-		Sama_3384	0.50	-1.4
4,011,328	-		Sama_3384	0.50	+0.1
4,011,342	+		Sama_3384	0.51	-0.5
4,011,342	+		Sama_3384	0.51	+0.1
4,011,350	+		Sama_3384	0.52	+0.0
4,011,461	+		Sama_3384	0.58	-0.4
4,011,461	+		Sama_3384	0.58	-0.2
4,011,569	+		Sama_3384	0.65	-0.3
4,011,604	+		Sama_3384	0.67	-0.5
4,011,618	-		Sama_3384	0.68	+0.3
4,011,661	+		Sama_3384	0.70	-0.6
4,011,661	+		Sama_3384	0.70	-0.8
4,011,662	-		Sama_3384	0.70	-0.0
4,011,742	+		Sama_3384	0.75	-0.6
4,011,743	-		Sama_3384	0.75	+0.1
4,011,755	+		Sama_3384	0.76	+0.7
4,011,755	+		Sama_3384	0.76	-1.1
4,011,755	+		Sama_3384	0.76	-0.4
4,011,756	-		Sama_3384	0.76	-1.1
4,011,776	+		Sama_3384	0.77	+0.6
4,011,776	+		Sama_3384	0.77	-0.3
4,011,776	+		Sama_3384	0.77	-2.3
4,011,776	+		Sama_3384	0.77	-0.7
4,011,777	-		Sama_3384	0.77	-0.5
4,011,777	-		Sama_3384	0.77	-0.3
4,011,777	-		Sama_3384	0.77	+0.5
4,011,783	-		Sama_3384	0.78	-0.0
4,011,823	+		Sama_3384	0.80	-1.9
4,011,947	-		Sama_3384	0.88	-0.5
4,011,947	-		Sama_3384	0.88	+0.1
4,012,046	+				-0.7
4,012,047	-				-1.3
4,012,068	+				-0.2
4,012,068	+				+0.0
4,012,068	+				-0.9
4,012,069	-				-0.9
4,012,069	-				+0.3
4,012,069	-				+0.8
4,012,069	-				-1.1
4,012,089	+				-1.1
4,012,090	-				-0.3
4,012,090	-				-0.1
4,012,149	+				-0.5
4,012,157	+				-1.1
4,012,157	+				-0.8
4,012,157	+				-0.7
4,012,157	+				-0.8
4,012,158	-				+0.0
4,012,186	-				-1.2
4,012,186	-				-0.7
4,012,194	+				-0.2
4,012,194	+				+0.9
4,012,195	-				-0.7
4,012,224	+				-1.4
4,012,225	-				+0.4
4,012,225	-				-0.3
4,012,250	+				-0.9
4,012,250	+				-0.1
4,012,250	+				-0.7
4,012,250	+				+1.1
4,012,250	+				-0.1
4,012,250	+				+0.7
4,012,250	+				+0.8
4,012,251	-				-1.3
4,012,251	-				-0.5
4,012,251	-				-0.0
4,012,251	-				+0.4
4,012,251	-				-0.3
4,012,260	-				-0.4
4,012,309	+				+0.4
4,012,309	+				+0.3
4,012,309	+				+0.7
4,012,309	+				-0.9
4,012,310	-				-0.1
4,012,318	+				-0.1
4,012,318	+				-1.3
4,012,318	+				+0.9
4,012,318	+				-0.1
4,012,318	+				-2.0
4,012,318	+				-0.2
4,012,318	+				-0.6
4,012,319	-				+0.2
4,012,319	-				-0.0
4,012,370	+		Sama_3385	0.12	+0.7
4,012,370	+		Sama_3385	0.12	+0.9
4,012,370	+		Sama_3385	0.12	+1.7
4,012,370	+		Sama_3385	0.12	-0.5
4,012,370	+		Sama_3385	0.12	-0.5
4,012,370	+		Sama_3385	0.12	+0.4
4,012,371	-		Sama_3385	0.12	+0.4
4,012,371	-		Sama_3385	0.12	+1.0
4,012,371	-		Sama_3385	0.12	-0.6
4,012,371	-		Sama_3385	0.12	+0.1
4,012,375	+		Sama_3385	0.12	-1.3
4,012,375	+		Sama_3385	0.12	+0.7
4,012,376	-		Sama_3385	0.12	-1.3
4,012,383	-		Sama_3385	0.12	+2.0
4,012,418	+		Sama_3385	0.15	-0.0
4,012,418	+		Sama_3385	0.15	-0.1
4,012,492	-		Sama_3385	0.19	+0.2
4,012,492	-		Sama_3385	0.19	+0.9
4,012,492	-		Sama_3385	0.19	-0.5
4,012,596	+		Sama_3385	0.26	-0.1
4,012,597	-		Sama_3385	0.26	-0.3
4,012,670	-		Sama_3385	0.31	+0.9
4,012,670	-		Sama_3385	0.31	-1.4
4,012,670	-		Sama_3385	0.31	-0.6
4,012,689	-		Sama_3385	0.32	-0.3
4,012,755	+		Sama_3385	0.36	+0.2
4,012,755	+		Sama_3385	0.36	-0.4
4,012,755	+		Sama_3385	0.36	+2.9
4,012,756	-		Sama_3385	0.36	-0.2
4,012,756	-		Sama_3385	0.36	+0.8
4,012,756	-		Sama_3385	0.36	-0.4
4,012,840	+		Sama_3385	0.42	+1.4
4,012,840	+		Sama_3385	0.42	+0.2
4,012,840	+		Sama_3385	0.42	+0.5
4,012,840	+		Sama_3385	0.42	+0.4
4,012,840	+		Sama_3385	0.42	-0.0
4,012,840	+		Sama_3385	0.42	-0.6
4,012,840	+		Sama_3385	0.42	-0.7
4,012,840	+		Sama_3385	0.42	-0.4
4,012,840	+		Sama_3385	0.42	-0.4
4,012,841	-		Sama_3385	0.42	+0.5
4,012,841	-		Sama_3385	0.42	-0.4
4,012,841	-		Sama_3385	0.42	+1.2
4,012,841	-		Sama_3385	0.42	-0.6
4,012,841	-		Sama_3385	0.42	+0.5
4,012,855	+		Sama_3385	0.43	+1.8
4,012,855	+		Sama_3385	0.43	-1.4
4,012,855	+		Sama_3385	0.43	+0.7
4,012,855	+		Sama_3385	0.43	+0.1
4,012,856	-		Sama_3385	0.43	+0.2
4,012,856	-		Sama_3385	0.43	+0.5
4,012,856	-		Sama_3385	0.43	+1.4
4,013,040	+		Sama_3385	0.55	-0.3
4,013,040	+		Sama_3385	0.55	+0.0
4,013,041	-		Sama_3385	0.55	-0.7
4,013,041	-		Sama_3385	0.55	-0.7
4,013,041	-		Sama_3385	0.55	-0.1
4,013,044	+		Sama_3385	0.55	-0.4
4,013,044	+		Sama_3385	0.55	-0.5
4,013,044	+		Sama_3385	0.55	-0.3
4,013,045	-		Sama_3385	0.55	-0.3
4,013,045	-		Sama_3385	0.55	-0.5
4,013,045	-		Sama_3385	0.55	+0.4
4,013,045	-		Sama_3385	0.55	+0.7
4,013,045	-		Sama_3385	0.55	+0.6
4,013,045	-		Sama_3385	0.55	+0.4
4,013,045	-		Sama_3385	0.55	-0.7
4,013,068	-		Sama_3385	0.56	-0.5
4,013,068	-		Sama_3385	0.56	-0.3
4,013,072	+		Sama_3385	0.57	-1.0
4,013,072	+		Sama_3385	0.57	-0.4
4,013,072	+		Sama_3385	0.57	-0.5
4,013,072	+		Sama_3385	0.57	+0.4
4,013,073	-		Sama_3385	0.57	+1.9
4,013,073	-		Sama_3385	0.57	-0.2
4,013,073	-		Sama_3385	0.57	-0.0
4,013,073	-		Sama_3385	0.57	+1.4
4,013,073	-		Sama_3385	0.57	+1.0
4,013,113	-		Sama_3385	0.59	+1.4
4,013,127	+		Sama_3385	0.60	-0.5
4,013,127	+		Sama_3385	0.60	+0.9
4,013,128	-		Sama_3385	0.60	-1.3
4,013,128	-		Sama_3385	0.60	-0.4
4,013,128	-		Sama_3385	0.60	-0.7
4,013,128	-		Sama_3385	0.60	-0.1
4,013,194	+		Sama_3385	0.65	-0.3
4,013,195	-		Sama_3385	0.65	-0.6
4,013,195	-		Sama_3385	0.65	-0.5
4,013,299	-		Sama_3385	0.71	+0.4
4,013,299	-		Sama_3385	0.71	-0.4
4,013,385	-		Sama_3385	0.77	-0.3
4,013,418	+		Sama_3385	0.79	+0.2
4,013,418	+		Sama_3385	0.79	-0.4
4,013,445	+		Sama_3385	0.81	-0.4
4,013,446	-		Sama_3385	0.81	-1.6
4,013,565	+		Sama_3385	0.88	-0.7
4,013,826	+		Sama_3386	0.19	-2.3
4,013,826	+		Sama_3386	0.19	-0.0
4,013,826	+		Sama_3386	0.19	-0.5
4,013,826	+		Sama_3386	0.19	-1.7
4,013,826	+		Sama_3386	0.19	-1.0
4,013,827	-		Sama_3386	0.20	-0.7
4,013,827	-		Sama_3386	0.20	-0.3
4,013,827	-		Sama_3386	0.20	+0.2
4,013,827	-		Sama_3386	0.20	-0.1
4,013,827	-		Sama_3386	0.20	-1.4
4,013,827	-		Sama_3386	0.20	-0.5
4,013,835	+		Sama_3386	0.22	-0.6
4,013,835	+		Sama_3386	0.22	-1.4
4,013,836	-		Sama_3386	0.22	+0.7
4,013,836	-		Sama_3386	0.22	-0.5
4,013,836	-		Sama_3386	0.22	-0.0
4,013,877	+		Sama_3386	0.31	-0.6
4,013,877	+		Sama_3386	0.31	-0.9
4,013,877	+		Sama_3386	0.31	-0.2
4,013,877	+		Sama_3386	0.31	-1.2
4,013,877	+		Sama_3386	0.31	+0.0
4,013,877	+		Sama_3386	0.31	+0.5
4,013,877	+		Sama_3386	0.31	+0.3
4,013,878	-		Sama_3386	0.31	+0.3
4,013,878	-		Sama_3386	0.31	-0.4
4,013,878	-		Sama_3386	0.31	-0.3
4,013,878	-		Sama_3386	0.31	-0.9
4,013,883	+		Sama_3386	0.33	+0.2
4,013,883	+		Sama_3386	0.33	+0.0
4,013,884	-		Sama_3386	0.33	+0.8
4,013,940	+		Sama_3386	0.46	+0.1
4,013,940	+		Sama_3386	0.46	-0.1
4,013,940	+		Sama_3386	0.46	+0.2
4,013,940	+		Sama_3386	0.46	-1.4
4,013,941	-		Sama_3386	0.46	+0.7
4,013,941	-		Sama_3386	0.46	-0.8
4,013,941	-		Sama_3386	0.46	-1.2
4,013,941	-		Sama_3386	0.46	-0.1
4,014,022	-		Sama_3386	0.65	-0.5
4,014,022	-		Sama_3386	0.65	-1.1
4,014,066	+		Sama_3386	0.75	-0.8
4,014,066	+		Sama_3386	0.75	-0.2
4,014,095	+		Sama_3386	0.82	-0.8
4,014,095	+		Sama_3386	0.82	-1.2
4,014,095	+		Sama_3386	0.82	-0.2
4,014,095	+		Sama_3386	0.82	+0.3
4,014,095	+		Sama_3386	0.82	-0.9
4,014,096	-		Sama_3386	0.82	+0.1
4,014,096	-		Sama_3386	0.82	-1.1
4,014,096	-		Sama_3386	0.82	+0.9
4,014,096	-		Sama_3386	0.82	+2.0
4,014,096	-		Sama_3386	0.82	+0.4
4,014,096	-		Sama_3386	0.82	-0.4
4,014,127	+		Sama_3386	0.89	-0.7
4,014,127	+		Sama_3386	0.89	-0.8
4,014,127	+		Sama_3386	0.89	+0.4
4,014,128	-		Sama_3386	0.89	+0.2
4,014,208	+				+0.6
4,014,208	+				-0.9
4,014,208	+				-0.3
4,014,209	-				+0.6
4,014,209	-				-1.7
4,014,209	-				+0.2
4,014,209	-				+0.1
4,014,213	+				-1.3
4,014,213	+				-0.2
4,014,213	+				-1.3
4,014,213	+				+0.6
4,014,213	+				-1.4
4,014,214	-				-0.8
4,014,214	-				-0.5
4,014,214	-				+0.7
4,014,214	-				+0.7
4,014,214	-				-0.2
4,014,214	-				-1.1
4,014,214	-				-0.9
4,014,214	-				-1.9
4,014,214	-				-0.6
4,014,214	-				-0.8
4,014,214	-				+0.1
4,014,214	-				-2.3
4,014,214	-				-0.9
4,014,215	+				-0.2
4,014,215	+				-1.9
4,014,215	+				-0.0
4,014,215	+				-0.6
4,014,215	+				-0.5
4,014,215	+				-0.1
4,014,215	+				-0.3
4,014,215	+				+0.0
4,014,215	+				+0.1
4,014,215	+				-0.4
4,014,215	+				-1.6
4,014,216	-				+0.1
4,014,216	-				+0.0
4,014,216	-				-1.5
4,014,216	-				+0.4
4,014,216	-				+0.6
4,014,216	-				-1.8
4,014,216	-				-2.5
4,014,216	-				-1.9
4,014,216	-				-0.1
4,014,216	-				+0.4
4,014,223	+				+0.3
4,014,223	+				-0.1
4,014,223	+				-2.0
4,014,223	+				+0.8
4,014,223	+				-0.8
4,014,223	+				-0.9
4,014,223	+				-0.0
4,014,223	+				-1.0
4,014,224	-				-1.3
4,014,224	-				+0.4
4,014,224	-				-0.0
4,014,224	-				+0.4
4,014,224	-				-0.3
4,014,224	-				-1.6
4,014,224	-				-1.1
4,014,227	+				+0.2
4,014,227	+				-0.8
4,014,227	+				+0.0
4,014,227	+				-0.8
4,014,227	+				-0.6
4,014,227	+				-0.6
4,014,227	+				+1.2
4,014,227	+				-0.7
4,014,227	+				+0.2
4,014,228	-				+0.9
4,014,228	-				+0.0
4,014,228	-				-0.6
4,014,228	-				-2.1
4,014,228	-				+0.1
4,014,228	-				-0.2
4,014,228	-				-1.0
4,014,260	-				-1.1
4,014,269	+				-2.3
4,014,269	+				-0.6
4,014,269	+				-0.7
4,014,269	+				-0.1
4,014,269	+				-1.3
4,014,269	+				-0.4
4,014,269	+				+0.8
4,014,269	+				-0.1
4,014,269	+				-0.2
4,014,269	+				+0.8
4,014,269	+				-0.4
4,014,269	+				-0.1
4,014,269	+				-0.1
4,014,269	+				-0.9
4,014,269	+				-2.3
4,014,269	+				-1.0
4,014,269	+				-0.1
4,014,269	+				-0.0
4,014,270	-				+0.1
4,014,270	-				-0.5
4,014,270	-				-0.6
4,014,270	-				-2.0
4,014,270	-				-0.6
4,014,308	-		Sama_3387	0.11	-1.6
4,014,320	+		Sama_3387	0.13	-1.7
4,014,320	+		Sama_3387	0.13	+0.6
4,014,424	+		Sama_3387	0.27	-1.1
4,014,424	+		Sama_3387	0.27	+0.4
4,014,511	+		Sama_3387	0.39	+0.4
4,014,521	-		Sama_3387	0.40	+0.3
4,014,599	+		Sama_3387	0.51	-1.1
4,014,599	+		Sama_3387	0.51	+1.1
4,014,600	-		Sama_3387	0.51	+0.2
4,014,600	-		Sama_3387	0.51	+2.0
4,014,604	+		Sama_3387	0.51	-0.6
4,014,641	+		Sama_3387	0.56	-1.0
4,014,642	-		Sama_3387	0.57	+0.4
4,014,728	+		Sama_3387	0.68	+0.2
4,014,730	+		Sama_3387	0.69	-0.3