Strain Fitness in Shewanella amazonensis SB2B around Sama_3338

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,966,086	-		Sama_3337	0.38	-0.3
3,966,121	+		Sama_3337	0.40	+0.1
3,966,121	+		Sama_3337	0.40	-0.4
3,966,121	+		Sama_3337	0.40	+0.0
3,966,121	+		Sama_3337	0.40	+0.0
3,966,121	+		Sama_3337	0.40	+0.5
3,966,121	+		Sama_3337	0.40	+0.1
3,966,121	+		Sama_3337	0.40	+0.4
3,966,121	+		Sama_3337	0.40	-0.2
3,966,121	+		Sama_3337	0.40	+0.2
3,966,121	+		Sama_3337	0.40	+0.2
3,966,121	+		Sama_3337	0.40	+0.9
3,966,122	-		Sama_3337	0.40	-0.9
3,966,122	-		Sama_3337	0.40	-0.4
3,966,122	-		Sama_3337	0.40	-0.3
3,966,122	-		Sama_3337	0.40	+0.8
3,966,122	-		Sama_3337	0.40	-0.1
3,966,125	+		Sama_3337	0.40	-0.1
3,966,125	+		Sama_3337	0.40	+0.8
3,966,125	+		Sama_3337	0.40	+0.9
3,966,126	-		Sama_3337	0.40	+0.3
3,966,168	+		Sama_3337	0.43	-0.5
3,966,168	+		Sama_3337	0.43	+0.7
3,966,168	+		Sama_3337	0.43	+0.4
3,966,168	+		Sama_3337	0.43	-0.4
3,966,169	-		Sama_3337	0.44	-1.3
3,966,169	-		Sama_3337	0.44	+1.0
3,966,169	-		Sama_3337	0.44	+0.0
3,966,172	+		Sama_3337	0.44	-0.6
3,966,172	+		Sama_3337	0.44	-0.4
3,966,296	+		Sama_3337	0.52	+0.2
3,966,296	+		Sama_3337	0.52	+0.1
3,966,296	+		Sama_3337	0.52	-0.0
3,966,296	+		Sama_3337	0.52	-1.3
3,966,297	-		Sama_3337	0.53	+0.3
3,966,297	-		Sama_3337	0.53	-0.3
3,966,438	-		Sama_3337	0.62	+0.6
3,966,438	-		Sama_3337	0.62	-0.4
3,966,438	-		Sama_3337	0.62	-0.4
3,966,532	+		Sama_3337	0.69	+0.0
3,966,532	+		Sama_3337	0.69	-1.6
3,966,571	+		Sama_3337	0.72	-1.1
3,966,571	+		Sama_3337	0.72	+0.8
3,966,571	+		Sama_3337	0.72	+0.3
3,966,571	+		Sama_3337	0.72	+0.4
3,966,572	-		Sama_3337	0.72	-1.6
3,966,572	-		Sama_3337	0.72	-0.0
3,966,572	-		Sama_3337	0.72	-0.0
3,966,572	-		Sama_3337	0.72	+0.2
3,966,572	-		Sama_3337	0.72	+0.1
3,966,632	+		Sama_3337	0.76	+0.1
3,966,638	+		Sama_3337	0.77	+0.4
3,966,639	-		Sama_3337	0.77	-0.5
3,966,646	+		Sama_3337	0.77	+0.2
3,966,647	-		Sama_3337	0.77	-0.4
3,966,757	+		Sama_3337	0.85	-0.4
3,966,836	+				-1.1
3,966,882	-				-0.6
3,966,903	+				+0.1
3,966,903	+				+0.0
3,966,903	+				-0.2
3,966,903	+				-0.0
3,966,903	+				-0.9
3,966,903	+				+0.6
3,966,903	+				+0.0
3,966,903	+				+0.6
3,966,903	+				-1.7
3,966,903	+				+0.2
3,966,904	-				-1.0
3,966,904	-				-1.7
3,966,904	-				-0.0
3,966,904	-				+2.2
3,966,904	-				+2.4
3,966,904	-				-1.7
3,966,904	-				+0.1
3,966,904	-				+0.5
3,966,904	-				-0.2
3,966,904	-				+0.4
3,966,904	-				-0.0
3,966,921	+				-0.8
3,966,922	-				+0.2
3,966,949	+				+0.5
3,966,950	-				+1.7
3,967,001	+				+0.4
3,967,001	+				+0.8
3,967,001	+				+0.8
3,967,001	+				-0.2
3,967,001	+				-0.4
3,967,001	+				+0.2
3,967,001	+				+2.2
3,967,001	+				+0.2
3,967,001	+				+1.4
3,967,001	+				-0.3
3,967,001	+				-1.4
3,967,001	+				+2.7
3,967,002	-				-0.0
3,967,002	-				+1.8
3,967,002	-				-0.2
3,967,002	-				+1.0
3,967,002	-				+0.3
3,967,002	-				-0.5
3,967,002	-				+0.0
3,967,002	-				-0.0
3,967,002	-				-0.1
3,967,004	-				-0.5
3,967,020	+				+0.3
3,967,021	-				+0.2
3,967,021	-				-0.1
3,967,021	-				-0.0
3,967,081	+				+0.0
3,967,081	+				+1.0
3,967,082	-				-0.2
3,967,082	-				-1.8
3,967,082	-				-0.4
3,967,106	+				+0.3
3,967,107	-				+0.0
3,967,107	-				-0.6
3,967,107	-				+0.9
3,967,107	-				-0.6
3,967,107	-				-1.7
3,967,107	-				-0.9
3,967,107	-				+0.5
3,967,107	-				+0.6
3,967,107	-				+0.1
3,967,107	-				+0.7
3,967,108	+				+0.9
3,967,108	+				+0.0
3,967,108	+				-0.1
3,967,109	-				+0.0
3,967,109	-				+0.8
3,967,109	-				+1.6
3,967,109	-				+0.8
3,967,163	+		Sama_3338	0.18	-0.3
3,967,164	-		Sama_3338	0.18	+0.8
3,967,164	-		Sama_3338	0.18	-0.1
3,967,164	-		Sama_3338	0.18	+0.4
3,967,255	-		Sama_3338	0.38	+0.9
3,967,255	-		Sama_3338	0.38	-0.2
3,967,268	-		Sama_3338	0.40	-0.3
3,967,268	-		Sama_3338	0.40	+0.6
3,967,268	-		Sama_3338	0.40	+0.0
3,967,268	-		Sama_3338	0.40	-0.4
3,967,268	-		Sama_3338	0.40	+0.8
3,967,268	-		Sama_3338	0.40	+1.2
3,967,268	-		Sama_3338	0.40	+0.3
3,967,292	-		Sama_3338	0.46	+0.3
3,967,336	-		Sama_3338	0.55	-0.3
3,967,344	-		Sama_3338	0.57	-1.0
3,967,344	-		Sama_3338	0.57	+1.1
3,967,383	+		Sama_3338	0.65	-0.2
3,967,469	+		Sama_3338	0.84	+0.0
3,967,510	+				+1.2
3,967,511	-				-0.2
3,967,556	-				+0.4
3,967,556	-				-0.4
3,967,568	-				-0.3
3,967,585	+				+1.4
3,967,586	-				-0.2
3,967,600	+				+0.7
3,967,600	+				-0.7
3,967,725	+		Sama_3339	0.14	-0.2
3,967,725	+		Sama_3339	0.14	-1.4
3,967,726	-		Sama_3339	0.14	-0.2
3,967,726	-		Sama_3339	0.14	+1.1
3,967,766	+		Sama_3339	0.21	-0.6
3,967,766	+		Sama_3339	0.21	-0.7
3,967,766	+		Sama_3339	0.21	-1.3
3,967,766	+		Sama_3339	0.21	+0.3
3,967,767	-		Sama_3339	0.21	+1.3
3,967,823	+		Sama_3339	0.31	+0.8
3,967,823	+		Sama_3339	0.31	+0.2
3,967,824	-		Sama_3339	0.31	+1.1
3,967,889	+		Sama_3339	0.42	+1.0
3,967,889	+		Sama_3339	0.42	+0.4
3,967,889	+		Sama_3339	0.42	-0.2
3,967,889	+		Sama_3339	0.42	+0.6
3,967,915	+		Sama_3339	0.46	-1.0
3,967,915	+		Sama_3339	0.46	+0.1
3,967,916	-		Sama_3339	0.46	-1.6
3,967,919	+		Sama_3339	0.47	-0.6
3,967,919	+		Sama_3339	0.47	+0.7
3,967,919	+		Sama_3339	0.47	+0.8
3,967,920	-		Sama_3339	0.47	+0.8
3,967,970	+		Sama_3339	0.56	-0.6
3,967,971	-		Sama_3339	0.56	+1.4
3,967,971	-		Sama_3339	0.56	-0.5
3,967,980	-		Sama_3339	0.57	-0.5
3,968,005	+		Sama_3339	0.61	+1.8
3,968,005	+		Sama_3339	0.61	+0.3
3,968,006	-		Sama_3339	0.62	+0.4
3,968,006	-		Sama_3339	0.62	-0.6
3,968,012	+		Sama_3339	0.63	-0.7
3,968,013	-		Sama_3339	0.63	-0.2
3,968,013	-		Sama_3339	0.63	+0.4
3,968,013	-		Sama_3339	0.63	+0.4
3,968,013	-		Sama_3339	0.63	+2.0
3,968,046	-		Sama_3339	0.68	+0.2
3,968,062	+		Sama_3339	0.71	+0.3
3,968,062	+		Sama_3339	0.71	-0.0
3,968,062	+		Sama_3339	0.71	+0.4
3,968,062	+		Sama_3339	0.71	+0.1
3,968,062	+		Sama_3339	0.71	-0.2
3,968,062	+		Sama_3339	0.71	-1.2
3,968,062	+		Sama_3339	0.71	-0.1
3,968,062	+		Sama_3339	0.71	+0.4
3,968,062	+		Sama_3339	0.71	+0.3
3,968,062	+		Sama_3339	0.71	-0.4
3,968,062	+		Sama_3339	0.71	+0.6
3,968,063	-		Sama_3339	0.71	+0.2
3,968,063	-		Sama_3339	0.71	-0.4
3,968,063	-		Sama_3339	0.71	+0.3
3,968,063	-		Sama_3339	0.71	+0.9
3,968,087	+		Sama_3339	0.75	+0.3
3,968,087	+		Sama_3339	0.75	+0.6
3,968,087	+		Sama_3339	0.75	-1.5
3,968,087	+		Sama_3339	0.75	-0.7
3,968,087	+		Sama_3339	0.75	-1.0
3,968,087	+		Sama_3339	0.75	-0.2
3,968,087	+		Sama_3339	0.75	-0.2
3,968,087	+		Sama_3339	0.75	+0.5
3,968,087	+		Sama_3339	0.75	-0.2
3,968,088	-		Sama_3339	0.75	-0.2
3,968,088	-		Sama_3339	0.75	-0.1
3,968,088	-		Sama_3339	0.75	+0.1
3,968,088	-		Sama_3339	0.75	+0.3
3,968,088	-		Sama_3339	0.75	+0.6
3,968,088	-		Sama_3339	0.75	-1.4
3,968,088	-		Sama_3339	0.75	+0.2
3,968,088	-		Sama_3339	0.75	-0.4
3,968,088	-		Sama_3339	0.75	-0.2
3,968,122	-		Sama_3339	0.81	-0.4
3,968,122	-		Sama_3339	0.81	+0.4
3,968,162	+		Sama_3339	0.88	+1.1
3,968,162	+		Sama_3339	0.88	-0.9
3,968,162	+		Sama_3339	0.88	+0.0
3,968,201	-				-0.0
3,968,201	-				+0.2
3,968,201	-				-0.1
3,968,236	+				-0.9
3,968,237	-				+3.4
3,968,292	+				-0.1
3,968,293	-				-0.0
3,968,313	+				+0.0
3,968,313	+				+0.2
3,968,313	+				-0.6
3,968,313	+				+0.4
3,968,314	-				+0.3
3,968,314	-				-0.9
3,968,314	-				-0.4
3,968,314	-				-0.9
3,968,314	-				-2.4
3,968,314	-				+0.9
3,968,314	-				+1.0
3,968,337	+		Sama_3340	0.12	+1.1
3,968,337	+		Sama_3340	0.12	+0.3
3,968,337	+		Sama_3340	0.12	-0.0
3,968,337	+		Sama_3340	0.12	-1.1
3,968,337	+		Sama_3340	0.12	+0.6
3,968,337	+		Sama_3340	0.12	-0.9
3,968,338	-		Sama_3340	0.12	-0.5
3,968,338	-		Sama_3340	0.12	-0.3
3,968,338	-		Sama_3340	0.12	+0.6
3,968,338	-		Sama_3340	0.12	-0.6
3,968,338	-		Sama_3340	0.12	+0.2
3,968,338	-		Sama_3340	0.12	+0.2
3,968,338	-		Sama_3340	0.12	-0.4
3,968,385	+		Sama_3340	0.17	+0.3
3,968,385	+		Sama_3340	0.17	+0.0
3,968,385	+		Sama_3340	0.17	+0.9
3,968,385	+		Sama_3340	0.17	-0.6
3,968,385	+		Sama_3340	0.17	-0.5
3,968,385	+		Sama_3340	0.17	-0.3
3,968,385	+		Sama_3340	0.17	+0.1
3,968,385	+		Sama_3340	0.17	-0.6
3,968,386	-		Sama_3340	0.17	+0.1
3,968,386	-		Sama_3340	0.17	+0.4
3,968,393	+		Sama_3340	0.18	-0.3
3,968,401	+		Sama_3340	0.18	+0.5
3,968,402	-		Sama_3340	0.19	-0.8
3,968,402	-		Sama_3340	0.19	-1.0
3,968,412	+		Sama_3340	0.20	-0.9
3,968,412	+		Sama_3340	0.20	+0.2
3,968,412	+		Sama_3340	0.20	+0.8
3,968,412	+		Sama_3340	0.20	-0.1
3,968,412	+		Sama_3340	0.20	+2.4
3,968,412	+		Sama_3340	0.20	+0.4
3,968,412	+		Sama_3340	0.20	-0.2
3,968,412	+		Sama_3340	0.20	+0.4
3,968,412	+		Sama_3340	0.20	+0.4
3,968,413	-		Sama_3340	0.20	+1.2
3,968,413	-		Sama_3340	0.20	+0.4
3,968,413	-		Sama_3340	0.20	+0.4
3,968,413	-		Sama_3340	0.20	-0.2
3,968,413	-		Sama_3340	0.20	+0.1
3,968,413	-		Sama_3340	0.20	+0.8
3,968,413	-		Sama_3340	0.20	-0.6
3,968,444	-		Sama_3340	0.23	+1.1
3,968,473	+		Sama_3340	0.26	-0.3
3,968,473	+		Sama_3340	0.26	-0.3
3,968,473	+		Sama_3340	0.26	+3.2
3,968,474	-		Sama_3340	0.26	-0.3
3,968,490	+		Sama_3340	0.28	+0.4
3,968,491	-		Sama_3340	0.28	+0.7
3,968,491	-		Sama_3340	0.28	+1.0