Strain Fitness in Shewanella amazonensis SB2B around Sama_3225

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,817,752	+	prmA	Sama_3224	0.12	-0.7
3,817,752	+	prmA	Sama_3224	0.12	+0.5
3,817,752	+	prmA	Sama_3224	0.12	+1.6
3,817,752	+	prmA	Sama_3224	0.12	+1.1
3,817,753	-	prmA	Sama_3224	0.12	-0.5
3,817,856	+	prmA	Sama_3224	0.23	+0.2
3,817,900	+	prmA	Sama_3224	0.28	-0.8
3,817,900	+	prmA	Sama_3224	0.28	-0.2
3,817,901	-	prmA	Sama_3224	0.28	-0.3
3,817,901	-	prmA	Sama_3224	0.28	+0.9
3,817,901	-	prmA	Sama_3224	0.28	-0.7
3,817,954	+	prmA	Sama_3224	0.34	+0.1
3,817,954	+	prmA	Sama_3224	0.34	-1.1
3,817,954	+	prmA	Sama_3224	0.34	-0.2
3,817,954	+	prmA	Sama_3224	0.34	-0.0
3,817,954	+	prmA	Sama_3224	0.34	-0.3
3,817,954	+	prmA	Sama_3224	0.34	+1.1
3,817,954	+	prmA	Sama_3224	0.34	+0.2
3,817,954	+	prmA	Sama_3224	0.34	+0.8
3,817,954	+	prmA	Sama_3224	0.34	+0.6
3,817,955	-	prmA	Sama_3224	0.35	-0.0
3,817,955	-	prmA	Sama_3224	0.35	-0.8
3,817,955	-	prmA	Sama_3224	0.35	-0.3
3,817,955	-	prmA	Sama_3224	0.35	+0.6
3,817,955	-	prmA	Sama_3224	0.35	+0.1
3,817,955	-	prmA	Sama_3224	0.35	+0.8
3,817,955	-	prmA	Sama_3224	0.35	+0.3
3,817,955	-	prmA	Sama_3224	0.35	-2.1
3,818,067	+	prmA	Sama_3224	0.47	-0.8
3,818,134	-	prmA	Sama_3224	0.55	-0.8
3,818,178	+	prmA	Sama_3224	0.60	+0.8
3,818,178	+	prmA	Sama_3224	0.60	-1.3
3,818,219	-	prmA	Sama_3224	0.64	+2.2
3,818,256	+	prmA	Sama_3224	0.68	+0.8
3,818,256	+	prmA	Sama_3224	0.68	+0.1
3,818,264	+	prmA	Sama_3224	0.69	-2.4
3,818,264	+	prmA	Sama_3224	0.69	-1.3
3,818,264	+	prmA	Sama_3224	0.69	+1.6
3,818,265	-	prmA	Sama_3224	0.69	+0.9
3,818,284	+	prmA	Sama_3224	0.72	-0.1
3,818,284	+	prmA	Sama_3224	0.72	+1.1
3,818,284	+	prmA	Sama_3224	0.72	+0.2
3,818,285	-	prmA	Sama_3224	0.72	+0.2
3,818,285	-	prmA	Sama_3224	0.72	-0.2
3,818,285	-	prmA	Sama_3224	0.72	+0.1
3,818,285	-	prmA	Sama_3224	0.72	+0.2
3,818,285	-	prmA	Sama_3224	0.72	-0.3
3,818,337	+	prmA	Sama_3224	0.78	+0.5
3,818,373	+	prmA	Sama_3224	0.82	-0.8
3,818,374	-	prmA	Sama_3224	0.82	-0.4
3,818,405	+	prmA	Sama_3224	0.85	+0.0
3,818,456	-				-0.9
3,818,519	+				+0.1
3,818,534	-				+0.0
3,818,578	-				-2.4
3,818,612	+				-1.7
3,818,612	+				-0.0
3,818,612	+				-0.2
3,818,613	-				-2.1
3,818,613	-				+0.5
3,818,643	+				+1.5
3,818,643	+				+1.1
3,818,644	-				+0.7
3,818,644	-				+1.2
3,818,646	+				+1.0
3,818,646	+				+1.3
3,818,646	+				+1.0
3,818,646	+				+1.7
3,818,647	-				+1.2
3,818,647	-				-1.2
3,818,698	+				+0.7
3,818,698	+				+0.9
3,818,698	+				+0.9
3,818,699	-				+0.4
3,818,776	+				+1.3
3,818,777	-				+0.4
3,818,777	-				+0.9
3,819,000	+		Sama_3225	0.33	+1.1
3,819,068	+		Sama_3225	0.40	+0.8
3,819,211	+		Sama_3225	0.54	+1.9
3,819,211	+		Sama_3225	0.54	+1.4
3,819,211	+		Sama_3225	0.54	+1.4
3,819,229	+		Sama_3225	0.56	+1.7
3,819,325	+		Sama_3225	0.66	+2.1
3,819,325	+		Sama_3225	0.66	+1.8
3,819,325	+		Sama_3225	0.66	+2.2
3,819,350	+		Sama_3225	0.69	+1.2
3,819,350	+		Sama_3225	0.69	+0.8
3,819,350	+		Sama_3225	0.69	+1.3
3,819,481	+		Sama_3225	0.82	+1.0
3,819,481	+		Sama_3225	0.82	+1.8
3,819,490	+		Sama_3225	0.83	+1.1
3,819,490	+		Sama_3225	0.83	+1.4
3,819,528	+		Sama_3225	0.87	+0.4
3,819,538	+		Sama_3225	0.88	+2.7
3,819,538	+		Sama_3225	0.88	+2.1
3,819,638	+				+1.5
3,819,641	+				+1.9
3,819,641	+				+0.7
3,819,641	+				+1.1
3,819,641	+				+1.3
3,819,641	+				+1.2
3,819,641	+				+0.6
3,819,646	+				+0.4
3,819,646	+				-0.5
3,819,646	+				+0.9
3,819,646	+				+1.9
3,819,646	+				+1.4
3,819,647	-				-0.2
3,819,652	+				+2.1
3,819,664	+				-1.1
3,819,973	-				+2.0
3,819,973	-				+1.5
3,819,986	+				-0.4
3,819,987	-				+1.8
3,819,987	-				+1.5
3,819,991	+				+1.4
3,819,991	+				+1.1
3,819,991	+				+1.1
3,819,991	+				+0.9
3,819,991	+				+0.3
3,819,992	-				+0.7
3,819,992	-				+1.1
3,819,992	-				+2.8
3,819,992	-				+1.5
3,819,992	-				+1.1
3,819,992	-				+0.6
3,819,992	-				+0.2
3,819,992	-				+1.2
3,819,992	-				-0.8
3,819,992	-				+0.4
3,820,011	+				+0.8
3,820,011	+				+0.6
3,820,018	-				+1.1
3,820,056	+				-2.0
3,820,056	+				-0.2
3,820,056	+				+0.2
3,820,057	-				+0.0
3,820,057	-				-0.7
3,820,068	+				-0.1
3,820,068	+				+0.5
3,820,068	+				-0.2
3,820,068	+				-0.6
3,820,069	-				+0.3
3,820,069	-				+0.1
3,820,069	-				+1.4
3,820,069	-				-0.7
3,820,069	-				-0.0
3,820,069	-				+0.6
3,820,075	+				-0.6
3,820,075	+				-0.5
3,820,075	+				+0.1
3,820,075	+				-0.7
3,820,076	-				+1.2
3,820,076	-				-0.2
3,820,076	-				-0.1
3,820,076	-				-0.0
3,820,076	-				-0.9
3,820,076	-				-0.8
3,820,079	+				-0.7
3,820,141	+				+0.4
3,820,141	+				-0.6
3,820,141	+				+2.4
3,820,142	-				+0.1
3,820,142	-				-0.2
3,820,142	-				+0.1
3,820,166	+				+1.2
3,820,166	+				+0.8
3,820,166	+				-0.2
3,820,166	+				-0.1
3,820,166	+				+1.2
3,820,166	+				+0.2
3,820,166	+				-1.2
3,820,166	+				-0.4
3,820,167	-				-0.0
3,820,167	-				-0.8
3,820,167	-				+0.4
3,820,185	+				-0.2
3,820,196	+				+1.4
3,820,196	+				+0.2
3,820,196	+				-0.2
3,820,197	-				+0.1
3,820,197	-				-0.2
3,820,197	-				+0.5
3,820,197	-				+0.1
3,820,197	-				+0.2
3,820,197	-				+0.9
3,820,202	+		Sama_3227	0.10	+0.9
3,820,202	+		Sama_3227	0.10	+1.1
3,820,202	+		Sama_3227	0.10	-0.9
3,820,202	+		Sama_3227	0.10	+0.0
3,820,202	+		Sama_3227	0.10	-0.2
3,820,202	+		Sama_3227	0.10	-0.8
3,820,203	-		Sama_3227	0.11	-0.0
3,820,203	-		Sama_3227	0.11	+0.6
3,820,203	-		Sama_3227	0.11	-0.3
3,820,203	-		Sama_3227	0.11	+1.1
3,820,203	-		Sama_3227	0.11	+1.0
3,820,203	-		Sama_3227	0.11	+0.1
3,820,203	-		Sama_3227	0.11	-0.5
3,820,203	-		Sama_3227	0.11	-1.6
3,820,203	-		Sama_3227	0.11	-0.2
3,820,203	-		Sama_3227	0.11	+0.1
3,820,203	-		Sama_3227	0.11	+0.1
3,820,203	-		Sama_3227	0.11	-0.8
3,820,203	-		Sama_3227	0.11	-0.3
3,820,206	+		Sama_3227	0.11	+1.4
3,820,206	+		Sama_3227	0.11	-0.8
3,820,206	+		Sama_3227	0.11	+0.2
3,820,206	+		Sama_3227	0.11	-0.1
3,820,207	-		Sama_3227	0.12	-1.2
3,820,207	-		Sama_3227	0.12	+0.4
3,820,207	-		Sama_3227	0.12	+0.2
3,820,207	-		Sama_3227	0.12	+1.4
3,820,221	+		Sama_3227	0.15	-0.5
3,820,221	+		Sama_3227	0.15	+0.6
3,820,229	+		Sama_3227	0.17	-0.2
3,820,229	+		Sama_3227	0.17	+0.1
3,820,229	+		Sama_3227	0.17	-0.4
3,820,229	+		Sama_3227	0.17	+0.2
3,820,230	-		Sama_3227	0.17	+0.1
3,820,230	-		Sama_3227	0.17	+0.1
3,820,230	-		Sama_3227	0.17	-0.4
3,820,301	+		Sama_3227	0.35	-0.1
3,820,301	+		Sama_3227	0.35	-0.2
3,820,309	+		Sama_3227	0.37	+0.6
3,820,316	+		Sama_3227	0.39	+0.5
3,820,342	-		Sama_3227	0.46	+1.0
3,820,379	+		Sama_3227	0.55	-0.3
3,820,379	+		Sama_3227	0.55	-0.7
3,820,395	+		Sama_3227	0.59	-0.4
3,820,455	+		Sama_3227	0.74	-0.1
3,820,455	+		Sama_3227	0.74	-0.4
3,820,455	+		Sama_3227	0.74	-0.0
3,820,456	-		Sama_3227	0.74	-0.3
3,820,478	-		Sama_3227	0.80	+0.0
3,820,478	-		Sama_3227	0.80	-0.2
3,820,478	-		Sama_3227	0.80	-0.3
3,820,530	+				+0.9
3,820,556	+				-0.0
3,820,556	+				-1.1
3,820,556	+				-1.2
3,820,557	-				+0.2
3,820,557	-				+0.8
3,820,557	-				-0.1
3,820,568	-				+0.4
3,820,583	+				-0.1
3,820,583	+				+1.5
3,820,584	-				+0.1
3,820,600	+				-0.6
3,820,600	+				-0.9
3,820,600	+				-0.1
3,820,600	+				+0.3
3,820,601	-				-0.3
3,820,601	-				-0.2
3,820,601	-				-0.2
3,820,601	-				+0.9
3,820,601	-				+0.2
3,820,613	+				+0.7