Strain Fitness in Shewanella amazonensis SB2B around Sama_2960

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
3,523,952	+		Sama_2959	0.36	+1.3
3,523,953	-		Sama_2959	0.36	-0.2
3,524,012	-		Sama_2959	0.40	-2.2
3,524,040	-		Sama_2959	0.42	-0.3
3,524,096	-		Sama_2959	0.46	+1.3
3,524,096	-		Sama_2959	0.46	-1.0
3,524,096	-		Sama_2959	0.46	+0.4
3,524,098	-		Sama_2959	0.46	-0.6
3,524,113	-		Sama_2959	0.48	+2.0
3,524,181	+		Sama_2959	0.53	+0.2
3,524,187	+		Sama_2959	0.53	+0.8
3,524,260	-		Sama_2959	0.58	+1.1
3,524,326	+		Sama_2959	0.63	+1.1
3,524,328	+		Sama_2959	0.63	+0.2
3,524,329	-		Sama_2959	0.64	-0.2
3,524,386	+		Sama_2959	0.68	-0.0
3,524,412	-		Sama_2959	0.70	+0.9
3,524,420	+		Sama_2959	0.70	-0.6
3,524,528	-		Sama_2959	0.78	-2.3
3,524,552	-		Sama_2959	0.80	-0.3
3,524,589	-		Sama_2959	0.83	+0.3
3,524,590	+		Sama_2959	0.83	+0.3
3,524,612	-		Sama_2959	0.84	-0.9
3,524,646	-		Sama_2959	0.87	+0.0
3,524,662	+		Sama_2959	0.88	+0.3
3,524,663	-		Sama_2959	0.88	+1.9
3,524,663	-		Sama_2959	0.88	+0.4
3,524,663	-		Sama_2959	0.88	-1.7
3,524,670	-		Sama_2959	0.89	-0.9
3,524,728	+				-0.6
3,524,728	+				+0.9
3,524,763	+				+0.1
3,524,847	-				+0.3
3,524,863	+				-0.7
3,524,903	+				+0.3
3,524,904	-				+0.9
3,524,932	-				-1.2
3,524,945	-		Sama_2960	0.11	+0.0
3,525,107	-		Sama_2960	0.29	+0.9
3,525,387	-		Sama_2960	0.61	+1.2
3,525,387	-		Sama_2960	0.61	-0.1
3,525,515	+		Sama_2960	0.76	+0.7
3,525,524	-		Sama_2960	0.77	+1.7
3,525,568	-		Sama_2960	0.82	+0.7
3,525,608	+		Sama_2960	0.86	-3.0
3,525,608	+		Sama_2960	0.86	+0.2
3,525,608	+		Sama_2960	0.86	+0.2
3,525,609	-		Sama_2960	0.86	-0.3
3,525,635	-		Sama_2960	0.89	+0.3
3,525,640	+		Sama_2960	0.90	+0.5
3,525,662	+				+0.7
3,525,663	-				+0.1
3,525,666	+				+1.3
3,525,666	+				+1.3
3,525,667	-				+1.3
3,525,667	-				+1.4
3,525,673	+				-2.0
3,525,673	+				-0.4
3,525,673	+				-0.5
3,525,673	+				+0.3
3,525,674	-				+0.2
3,525,675	+				-0.0
3,525,675	+				-0.1
3,525,687	+				-1.9
3,525,695	+				-0.6
3,525,695	+				-0.4
3,525,696	-				-1.5
3,525,711	+				+0.3
3,525,711	+				-0.8
3,525,711	+				+0.1
3,525,712	-				+0.5
3,525,716	+				+0.4
3,525,716	+				-0.8
3,525,716	+				-2.2
3,525,770	-				-0.3
3,525,824	+		Sama_2961	0.17	+0.3
3,525,824	+		Sama_2961	0.17	-0.2
3,525,825	-		Sama_2961	0.18	-0.6
3,525,825	-		Sama_2961	0.18	-0.7
3,525,861	+		Sama_2961	0.29	-0.5
3,525,894	+		Sama_2961	0.40	+0.5
3,525,904	+		Sama_2961	0.43	+0.1
3,525,907	+		Sama_2961	0.44	+0.1
3,525,907	+		Sama_2961	0.44	+0.4
3,525,920	+		Sama_2961	0.49	-0.6
3,525,921	-		Sama_2961	0.49	+0.3
3,525,953	+		Sama_2961	0.59	-0.2
3,525,954	-		Sama_2961	0.60	+0.0
3,526,001	+		Sama_2961	0.75	+0.6
3,526,001	+		Sama_2961	0.75	-1.0
3,526,001	+		Sama_2961	0.75	+0.7
3,526,009	+		Sama_2961	0.78	+0.1
3,526,010	-		Sama_2961	0.78	+1.0
3,526,029	+		Sama_2961	0.84	-0.8
3,526,029	+		Sama_2961	0.84	-0.1
3,526,030	-		Sama_2961	0.85	+0.5
3,526,030	-		Sama_2961	0.85	-0.6
3,526,030	-		Sama_2961	0.85	-0.2
3,526,056	+				-0.7
3,526,056	+				-0.0
3,526,088	+				+1.1
3,526,088	+				-0.7
3,526,088	+				-0.5
3,526,089	-				-0.3
3,526,089	-				+0.1
3,526,089	-				+0.3
3,526,089	-				-0.0
3,526,089	-				+0.6
3,526,127	-				-1.5
3,526,127	-				+0.6
3,526,330	+				+0.5
3,526,394	+				+0.0
3,526,395	-				-0.1
3,526,398	+				-0.1
3,526,399	-				-1.8
3,526,399	-				+0.1
3,526,399	-				-0.9
3,526,399	-				+1.3
3,526,399	-				-0.5
3,526,399	-				+0.2
3,526,412	+				+0.5
3,526,412	+				-1.5
3,526,412	+				-0.6
3,526,412	+				+0.2
3,526,413	-				-0.2
3,526,413	-				-0.1
3,526,413	-				+0.6
3,526,446	+				-0.5
3,526,446	+				-0.8
3,526,447	-				-2.0
3,526,447	-				+0.4
3,526,447	-				-0.1
3,526,447	-				-0.8
3,526,500	-				-1.0
3,526,514	-				+0.6
3,526,514	-				+0.5
3,526,514	-				+0.3
3,526,585	+		Sama_2962	0.35	-0.2
3,526,637	-		Sama_2962	0.60	-0.1
3,526,637	-		Sama_2962	0.60	+0.7
3,526,637	-		Sama_2962	0.60	+0.0
3,526,649	+		Sama_2962	0.65	-0.1
3,526,649	+		Sama_2962	0.65	+0.3
3,526,649	+		Sama_2962	0.65	-0.1
3,526,649	+		Sama_2962	0.65	-0.9
3,526,650	-		Sama_2962	0.66	+0.7
3,526,650	-		Sama_2962	0.66	-1.3
3,526,650	-		Sama_2962	0.66	-0.9
3,526,650	-		Sama_2962	0.66	+0.1
3,526,674	-		Sama_2962	0.77	-0.0
3,526,706	+				+0.1
3,526,707	-				-0.9
3,526,707	-				+0.3
3,526,722	-				-0.7